Wall clock time and date at job start Tue Mar 31 2020 17:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46636 * 2 1 4 4 H 1.08996 * 109.47434 * 305.85242 * 3 2 1 5 5 C 1.50706 * 109.46633 * 185.85514 * 3 2 1 6 6 H 1.08003 * 119.99874 * 245.44442 * 5 3 2 7 7 C 1.37877 * 120.00249 * 65.45235 * 5 3 2 8 8 N 1.31519 * 119.99527 * 355.19189 * 7 5 3 9 9 Si 1.86797 * 120.00188 * 175.19571 * 7 5 3 10 10 H 1.48501 * 109.47176 * 94.99588 * 9 7 5 11 11 H 1.48499 * 109.46806 * 214.99599 * 9 7 5 12 12 H 1.48497 * 109.46974 * 334.99508 * 9 7 5 13 13 N 1.46494 * 109.47097 * 65.85916 * 3 2 1 14 14 C 1.34781 * 120.00098 * 274.99589 * 13 3 2 15 15 O 1.21286 * 119.99362 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00279 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.57833 * 54.72711 * 16 14 13 18 18 C 1.53530 * 109.58109 * 294.32191 * 16 14 13 19 19 N 1.47297 * 107.57620 * 181.99181 * 18 16 14 20 20 C 1.34779 * 121.16236 * 222.22410 * 19 18 16 21 21 C 1.50700 * 119.99624 * 353.96038 * 20 19 18 22 22 O 1.21292 * 120.00174 * 173.95743 * 20 19 18 23 23 C 1.40550 * 117.67990 * 41.94503 * 19 18 16 24 24 C 1.38568 * 120.09233 * 166.33462 * 23 19 18 25 25 C 1.38262 * 119.87746 * 179.87965 * 24 23 19 26 26 C 1.38273 * 120.06067 * 0.02562 * 25 24 23 27 27 C 1.38197 * 120.29682 * 0.04596 * 26 25 24 28 28 C 1.38705 * 120.05009 * 0.02562 * 27 26 25 29 29 O 1.35905 * 119.66142 * 179.78774 * 28 27 26 30 30 H 1.08999 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46737 * 299.99404 * 1 2 3 32 32 H 1.08997 * 109.47383 * 59.99609 * 1 2 3 33 33 H 1.09006 * 109.46737 * 240.00596 * 2 1 3 34 34 H 1.08995 * 109.47819 * 120.00096 * 2 1 3 35 35 H 0.97002 * 119.99299 * 180.02562 * 8 7 5 36 36 H 0.97003 * 120.00186 * 95.00005 * 13 3 2 37 37 H 1.09002 * 109.84041 * 62.46796 * 18 16 14 38 38 H 1.09004 * 109.83519 * 301.51090 * 18 16 14 39 39 H 1.09001 * 109.47126 * 65.02543 * 21 20 19 40 40 H 1.09002 * 109.46625 * 185.02421 * 21 20 19 41 41 H 1.09001 * 109.47327 * 305.02405 * 21 20 19 42 42 H 1.08003 * 120.06390 * 359.85597 * 24 23 19 43 43 H 1.08002 * 119.96764 * 179.97438 * 25 24 23 44 44 H 1.08003 * 119.84789 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.97358 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5935 1.9857 -0.8329 5 6 3.5400 1.4450 -0.1450 6 1 4.1599 1.8055 0.6626 7 6 4.1209 0.9873 -1.3086 8 7 3.3732 0.4612 -2.2540 9 14 5.9699 1.1143 -1.5422 10 1 6.6088 -0.1640 -1.1387 11 1 6.2706 1.3890 -2.9702 12 1 6.5000 2.2191 -0.7033 13 7 1.6701 2.0912 1.2604 14 6 0.4545 2.6575 1.3955 15 8 -0.3330 2.6304 0.4735 16 6 0.0742 3.3252 2.6919 17 1 0.8201 4.0777 2.9477 18 6 -0.0045 2.2743 3.8084 19 7 -0.4248 2.9643 5.0400 20 6 0.1498 2.6849 6.2267 21 6 1.1444 1.5580 6.3355 22 8 -0.1335 3.3405 7.2070 23 6 -1.4418 3.9286 4.9335 24 6 -2.0725 4.4019 6.0729 25 6 -3.0707 5.3523 5.9633 26 6 -3.4392 5.8292 4.7188 27 6 -2.8144 5.3595 3.5791 28 6 -1.8130 4.4050 3.6792 29 8 -1.2069 3.9455 2.5530 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5138 0.8899 35 1 3.7820 0.1388 -3.0725 36 1 2.3000 2.1132 1.9977 37 1 0.9740 1.8173 3.9559 38 1 -0.7350 1.5092 3.5453 39 1 2.0281 1.7948 5.7429 40 1 1.4312 1.4260 7.3788 41 1 0.6933 0.6380 5.9635 42 1 -1.7852 4.0288 7.0449 43 1 -3.5635 5.7218 6.8504 44 1 -4.2191 6.5719 4.6372 45 1 -3.1061 5.7360 2.6098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762721607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:05 Heat of formation + Delta-G solvation = -86.252232 kcal Electronic energy + Delta-G solvation = -29240.528558 eV Core-core repulsion = 25223.072036 eV Total energy + Delta-G solvation = -4017.456522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.64508 -40.89968 -40.07623 -38.48017 -36.92484 -36.67125 -34.39781 -33.22913 -32.29979 -31.82100 -30.72802 -29.22687 -28.56457 -26.21928 -24.95943 -24.31537 -22.97875 -21.97273 -21.24045 -20.65255 -19.48581 -19.22303 -18.58296 -17.97573 -17.41337 -17.11996 -16.94523 -16.82005 -16.38930 -16.05752 -15.84158 -15.48752 -15.05551 -14.99900 -14.72164 -14.57105 -14.48095 -14.18490 -13.75942 -13.49386 -13.41550 -13.21710 -13.11619 -12.96034 -12.87783 -12.83689 -12.65311 -12.47518 -12.19812 -12.12739 -12.06085 -11.58117 -11.37106 -11.03333 -10.87911 -10.60756 -10.52946 -9.71664 -9.55552 -8.94560 -8.15109 -6.30813 0.16641 0.32881 1.31587 1.42196 1.46648 1.48969 1.57210 1.61913 1.67334 2.41721 2.67543 2.78509 3.16067 3.18220 3.29045 3.65599 3.66903 3.82718 3.92035 4.11774 4.25583 4.30887 4.37485 4.42735 4.52580 4.53019 4.58247 4.60290 4.76362 4.79337 4.97073 5.08167 5.14789 5.23928 5.28935 5.39456 5.45522 5.51691 5.53496 5.61341 5.74979 5.81470 5.91265 6.04853 6.16189 6.25754 6.76459 6.82344 6.85899 7.32278 7.47203 8.90991 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.003198 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.239066 B = 8754.182294 C = 9534.477027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.117 4.117 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.544 4.544 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.292 1.292 12 H -0.263 1.263 13 N -0.689 5.689 14 C 0.514 3.486 15 O -0.562 6.562 16 C 0.066 3.934 17 H 0.115 0.885 18 C 0.084 3.916 19 N -0.557 5.557 20 C 0.512 3.488 21 C -0.172 4.172 22 O -0.556 6.556 23 C 0.058 3.942 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.098 4.098 27 C -0.137 4.137 28 C 0.073 3.927 29 O -0.308 6.308 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.020 0.980 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.264 0.736 36 H 0.409 0.591 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.163 0.837 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 4.016 18.231 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.219 1.219 12 H -0.187 1.187 13 N -0.340 5.340 14 C 0.298 3.702 15 O -0.440 6.440 16 C 0.006 3.994 17 H 0.133 0.867 18 C -0.039 4.039 19 N -0.283 5.283 20 C 0.306 3.694 21 C -0.230 4.230 22 O -0.435 6.435 23 C -0.035 4.035 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.116 4.116 27 C -0.156 4.156 28 C 0.026 3.974 29 O -0.222 6.222 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.170 0.830 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.172 0.828 43 H 0.172 0.828 44 H 0.180 0.820 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.117 4.180 17.733 19.559 hybrid contribution 1.114 0.015 -0.569 1.251 sum -6.003 4.194 17.163 18.660 Atomic orbital electron populations 1.21715 0.97217 0.99275 1.00208 1.21776 0.93439 0.98806 1.01580 1.18452 0.93900 0.89345 0.80577 0.98186 1.21553 0.91206 1.43379 1.02115 0.90395 1.25724 1.02788 0.94348 0.95522 1.70073 1.37209 1.40149 1.07812 0.85427 0.79630 0.78758 0.77081 1.19830 1.21854 1.18692 1.46095 1.14102 1.55660 1.18170 1.19958 0.82859 0.79217 0.88190 1.90734 1.51545 1.59362 1.42348 1.22599 0.85861 0.96773 0.94202 0.86726 1.22712 1.05824 0.93886 0.81455 1.45962 1.35179 1.37747 1.09367 1.21887 0.81464 0.85674 0.80370 1.22118 0.98104 0.95489 1.07296 1.90562 1.63106 1.52284 1.37511 1.18225 0.94998 0.96209 0.94098 1.21791 0.96086 0.98493 0.98413 1.21420 0.97117 0.97264 0.98913 1.21309 0.99698 0.99921 0.90691 1.20753 0.97265 0.96356 1.01200 1.18970 0.97662 0.97142 0.83627 1.86142 1.32324 1.73602 1.30124 0.93441 0.93528 0.96063 0.91664 0.92715 0.92717 0.75542 0.83015 0.88696 0.86211 0.87511 0.86876 0.82841 0.82795 0.81980 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.53 71.98 0.61 -4.63 16 2 C -0.12 -5.18 5.49 30.60 0.17 -5.01 16 3 C 0.28 12.98 2.17 44.25 0.10 13.08 16 4 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 5 C -0.54 -26.21 8.67 25.60 0.22 -25.99 16 6 H 0.08 3.42 7.72 -2.91 -0.02 3.40 16 7 C 0.02 0.84 5.35 84.65 0.45 1.30 16 8 N -0.91 -50.03 11.52 21.45 0.25 -49.78 16 9 Si 0.97 39.79 29.54 68.60 2.03 41.81 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.69 -24.14 5.00 -446.09 -2.23 -26.38 16 14 C 0.51 18.46 5.79 87.66 0.51 18.97 16 15 O -0.56 -25.91 13.66 15.89 0.22 -25.70 16 16 C 0.07 1.85 3.38 30.03 0.10 1.95 16 17 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 18 C 0.08 1.73 5.67 86.41 0.49 2.21 16 19 N -0.56 -12.77 3.01 -627.74 -1.89 -14.66 16 20 C 0.51 10.75 7.70 87.66 0.68 11.43 16 21 C -0.17 -1.84 8.81 71.24 0.63 -1.21 16 22 O -0.56 -15.28 13.97 -3.07 -0.04 -15.33 16 23 C 0.06 1.59 6.32 38.05 0.24 1.83 16 24 C -0.13 -3.23 8.94 22.35 0.20 -3.04 16 25 C -0.13 -2.57 10.05 22.28 0.22 -2.35 16 26 C -0.10 -1.87 10.03 22.27 0.22 -1.65 16 27 C -0.14 -3.37 9.97 22.37 0.22 -3.15 16 28 C 0.07 2.11 6.51 22.62 0.15 2.26 16 29 O -0.31 -10.21 9.51 -73.55 -0.70 -10.91 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.05 1.82 5.63 -2.38 -0.01 1.80 16 32 H 0.02 0.97 7.90 -2.39 -0.02 0.95 16 33 H 0.06 3.33 6.22 -2.38 -0.01 3.32 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.41 10.91 8.46 -92.71 -0.78 10.13 16 37 H 0.15 1.91 6.35 -2.39 -0.02 1.89 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 0.79 7.60 -2.39 -0.02 0.77 16 40 H 0.11 1.04 8.12 -2.39 -0.02 1.03 16 41 H 0.11 0.84 8.10 -2.39 -0.02 0.82 16 42 H 0.15 4.12 5.18 -3.79 -0.02 4.11 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -72.27 364.81 3.08 -69.19 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.24 Total: 25.75 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.21 Total: 6.00 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -3.88 Total: -90.82 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.53 Total: -51.93 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -72.27 3.08 -69.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.061 kcal (2) G-P(sol) polarization free energy of solvation -72.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds