Wall clock time and date at job start Tue Mar 31 2020 17:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47083 * 2 1 4 4 H 1.09002 * 109.46688 * 54.99884 * 3 2 1 5 5 C 1.50700 * 109.46812 * 174.99893 * 3 2 1 6 6 H 1.07996 * 120.00222 * 120.00147 * 5 3 2 7 7 C 1.37882 * 119.99928 * 299.99644 * 5 3 2 8 8 N 1.31512 * 120.00261 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99662 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47082 * 90.00589 * 9 7 5 11 11 H 1.48496 * 109.47171 * 209.99945 * 9 7 5 12 12 H 1.48493 * 109.47501 * 330.00623 * 9 7 5 13 13 N 1.46493 * 109.47037 * 294.99798 * 3 2 1 14 14 C 1.34780 * 120.00190 * 85.00121 * 13 3 2 15 15 O 1.21284 * 119.99498 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00152 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.58062 * 305.26848 * 16 14 13 18 18 C 1.53535 * 109.58007 * 65.66979 * 16 14 13 19 19 N 1.47312 * 107.56908 * 178.00978 * 18 16 14 20 20 C 1.34776 * 121.16301 * 138.04364 * 19 18 16 21 21 C 1.50699 * 120.00026 * 355.74923 * 20 19 18 22 22 O 1.21292 * 120.00048 * 175.75211 * 20 19 18 23 23 C 1.40550 * 117.67015 * 318.02054 * 19 18 16 24 24 C 1.38576 * 120.08869 * 193.66149 * 23 19 18 25 25 C 1.38250 * 119.88339 * 180.17476 * 24 23 19 26 26 C 1.38281 * 120.05899 * 0.02562 * 25 24 23 27 27 C 1.38206 * 120.29317 * 359.92792 * 26 25 24 28 28 C 1.38706 * 120.05191 * 0.02562 * 27 26 25 29 29 O 1.35902 * 119.65876 * 180.15802 * 28 27 26 30 30 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46954 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.46874 * 59.99921 * 1 2 3 33 33 H 1.09003 * 109.47094 * 239.99949 * 2 1 3 34 34 H 1.08999 * 109.46874 * 120.00079 * 2 1 3 35 35 H 0.96992 * 120.00356 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00212 * 264.72428 * 13 3 2 37 37 H 1.08999 * 109.83967 * 297.52471 * 18 16 14 38 38 H 1.09000 * 109.83555 * 58.49829 * 18 16 14 39 39 H 1.09001 * 109.47047 * 64.96464 * 21 20 19 40 40 H 1.08997 * 109.47006 * 184.96539 * 21 20 19 41 41 H 1.09001 * 109.47465 * 304.97005 * 21 20 19 42 42 H 1.08013 * 120.05814 * 0.15707 * 24 23 19 43 43 H 1.07998 * 119.97460 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.85481 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.97145 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8800 1.3812 10 1 6.4428 2.1129 2.0838 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3391 2.6327 -0.4341 16 6 0.0368 3.3386 -2.6545 17 1 0.7791 4.0924 -2.9170 18 6 -0.0574 2.2932 -3.7750 19 7 -0.4949 2.9896 -4.9972 20 6 0.0593 2.7125 -6.1941 21 6 1.2113 1.7452 -6.2852 22 8 -0.3691 3.2417 -7.1979 23 6 -1.5108 3.9527 -4.8715 24 6 -2.1574 4.4317 -5.9996 25 6 -3.1537 5.3817 -5.8714 26 6 -3.5039 5.8534 -4.6196 27 6 -2.8629 5.3783 -3.4911 28 6 -1.8628 4.4245 -3.6100 29 8 -1.2400 3.9605 -2.4948 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8292 -0.0617 2.9496 36 1 2.2736 2.1267 -1.9964 37 1 0.9190 1.8372 -3.9385 38 1 -0.7842 1.5268 -3.5057 39 1 0.8749 0.7509 -5.9913 40 1 1.5805 1.7155 -7.3103 41 1 2.0115 2.0694 -5.6199 42 1 -1.8834 4.0638 -6.9775 43 1 -3.6583 5.7563 -6.7496 44 1 -4.2823 6.5958 -4.5232 45 1 -3.1408 5.7500 -2.5159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762721609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:15 Heat of formation + Delta-G solvation = -63.703265 kcal Electronic energy + Delta-G solvation = -29255.824954 eV Core-core repulsion = 25239.346229 eV Total energy + Delta-G solvation = -4016.478725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.65591 -39.64167 -38.93387 -37.40641 -35.75640 -35.15577 -32.70895 -31.72970 -31.35952 -30.58418 -29.80471 -28.15851 -26.97846 -25.09947 -23.50214 -23.08274 -21.87115 -20.56529 -19.79228 -19.55004 -18.40386 -17.79531 -17.69277 -16.61843 -16.26564 -15.96259 -15.62923 -15.43048 -15.21353 -14.76530 -14.48448 -14.24808 -14.06620 -13.88315 -13.55628 -13.51943 -13.16402 -12.79437 -12.75591 -12.49348 -12.23154 -12.01233 -11.96723 -11.66851 -11.53517 -11.36344 -11.15021 -11.07658 -10.94106 -10.44874 -10.42739 -10.30582 -9.76961 -9.69501 -9.22957 -9.16352 -8.61722 -8.59636 -8.05624 -7.97682 -6.22983 -4.33473 1.10084 1.31094 2.25584 2.29175 2.77058 3.01124 3.17764 3.25454 3.26007 3.68342 3.90772 4.06967 4.22816 4.27353 4.57689 4.70812 4.80264 4.84762 4.95934 5.04115 5.08368 5.11519 5.17300 5.28601 5.32666 5.38509 5.51057 5.70777 6.03272 6.17343 6.27569 6.28895 6.32353 6.45337 6.52763 6.72263 6.88947 6.90979 7.05790 7.16812 7.25358 7.28130 7.48371 7.58051 7.69658 7.75847 8.04732 8.40715 8.61954 8.86304 9.33958 10.82251 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003203 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.285800 B = 8740.275350 C = 9568.794145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.511 3.489 15 O -0.513 6.513 16 C 0.059 3.941 17 H 0.099 0.901 18 C 0.076 3.924 19 N -0.555 5.555 20 C 0.519 3.481 21 C -0.176 4.176 22 O -0.523 6.523 23 C 0.071 3.929 24 C -0.120 4.120 25 C -0.136 4.136 26 C -0.105 4.105 27 C -0.127 4.127 28 C 0.100 3.900 29 O -0.280 6.280 30 H 0.025 0.975 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.101 0.899 35 H 0.266 0.734 36 H 0.388 0.612 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.949 4.578 -15.485 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.292 3.708 15 O -0.388 6.388 16 C -0.002 4.002 17 H 0.116 0.884 18 C -0.047 4.047 19 N -0.280 5.280 20 C 0.310 3.690 21 C -0.236 4.236 22 O -0.400 6.400 23 C -0.022 4.022 24 C -0.139 4.139 25 C -0.155 4.155 26 C -0.124 4.124 27 C -0.147 4.147 28 C 0.053 3.947 29 O -0.192 6.192 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.221 0.779 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.187 0.813 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.697 4.647 -14.944 17.440 hybrid contribution 1.451 -0.089 -0.207 1.469 sum -6.245 4.558 -15.151 17.010 Atomic orbital electron populations 1.21857 0.98298 0.98273 1.01202 1.21957 0.92568 0.99590 1.02545 1.18880 0.94428 0.89191 0.80343 0.93035 1.21179 0.90407 1.39498 1.06531 0.91979 1.24877 0.98696 0.94662 0.95319 1.69878 1.35269 1.37238 1.09307 0.86442 0.84647 0.77738 0.78244 1.20528 1.21032 1.19823 1.46455 1.13561 1.55865 1.19148 1.19424 0.83689 0.80206 0.87460 1.90748 1.51057 1.57778 1.39258 1.22728 0.85863 0.95806 0.95805 0.88365 1.22705 1.03851 0.95151 0.82999 1.45807 1.35679 1.37820 1.08687 1.21034 0.84004 0.82527 0.81431 1.22017 0.96295 0.99103 1.06140 1.90498 1.62365 1.51966 1.35163 1.18061 0.94483 0.95499 0.94156 1.22031 0.94846 0.97350 0.99678 1.21073 0.98351 0.98565 0.97478 1.20964 0.99671 0.99977 0.91793 1.20443 0.97418 0.96649 1.00141 1.18724 0.96293 0.95768 0.83942 1.86177 1.31509 1.72598 1.28931 0.95614 0.93006 0.94549 0.94848 0.88059 0.92405 0.77942 0.86576 0.88336 0.88500 0.88167 0.88659 0.81257 0.85620 0.85374 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.52 37.16 0.32 -2.55 16 2 C -0.13 -2.83 5.45 -26.72 -0.15 -2.98 16 3 C 0.27 6.24 2.24 -69.08 -0.15 6.09 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.07 8.73 -34.44 -0.30 -13.37 16 6 H 0.06 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.38 11.29 55.43 0.63 -22.75 16 9 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 13 N -0.70 -12.54 5.00 -54.93 -0.27 -12.82 16 14 C 0.51 9.18 5.75 -10.99 -0.06 9.11 16 15 O -0.51 -11.45 13.65 -14.24 -0.19 -11.64 16 16 C 0.06 0.85 3.37 -27.61 -0.09 0.75 16 17 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.08 0.86 5.78 -3.32 -0.02 0.84 16 19 N -0.55 -6.79 3.01 -112.34 -0.34 -7.12 16 20 C 0.52 5.92 7.76 -10.99 -0.09 5.83 16 21 C -0.18 -1.25 8.81 36.00 0.32 -0.93 16 22 O -0.52 -7.38 13.79 5.55 0.08 -7.30 16 23 C 0.07 1.00 6.34 -83.37 -0.53 0.47 16 24 C -0.12 -1.58 9.03 -39.45 -0.36 -1.93 16 25 C -0.14 -1.51 10.05 -39.56 -0.40 -1.91 16 26 C -0.11 -1.13 10.03 -39.58 -0.40 -1.52 16 27 C -0.13 -1.62 9.97 -39.42 -0.39 -2.01 16 28 C 0.10 1.47 6.52 -39.05 -0.25 1.21 16 29 O -0.28 -4.58 9.51 -39.22 -0.37 -4.96 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 32 H 0.04 0.71 5.65 -51.93 -0.29 0.42 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.39 5.64 8.48 -40.82 -0.35 5.30 16 37 H 0.12 0.95 6.14 -51.93 -0.32 0.63 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.65 8.12 -51.93 -0.42 0.22 16 41 H 0.09 0.53 7.47 -51.93 -0.39 0.14 16 42 H 0.17 2.34 4.91 -53.56 -0.26 2.08 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -31.37 363.81 -8.73 -40.10 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.06 Total: 7.79 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -2.65 Total: -1.26 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.01 Total: -42.69 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.49 Total: -23.90 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.37 -8.73 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.599 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds