Wall clock time and date at job start Tue Mar 31 2020 17:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47083 * 2 1 4 4 H 1.09002 * 109.46688 * 54.99884 * 3 2 1 5 5 C 1.50700 * 109.46812 * 174.99893 * 3 2 1 6 6 H 1.07996 * 120.00222 * 120.00147 * 5 3 2 7 7 C 1.37882 * 119.99928 * 299.99644 * 5 3 2 8 8 N 1.31512 * 120.00261 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99662 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47082 * 90.00589 * 9 7 5 11 11 H 1.48496 * 109.47171 * 209.99945 * 9 7 5 12 12 H 1.48493 * 109.47501 * 330.00623 * 9 7 5 13 13 N 1.46493 * 109.47037 * 294.99798 * 3 2 1 14 14 C 1.34780 * 120.00190 * 85.00121 * 13 3 2 15 15 O 1.21284 * 119.99498 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00152 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.58062 * 305.26848 * 16 14 13 18 18 C 1.53535 * 109.58007 * 65.66979 * 16 14 13 19 19 N 1.47312 * 107.56908 * 178.00978 * 18 16 14 20 20 C 1.34776 * 121.16301 * 138.04364 * 19 18 16 21 21 C 1.50699 * 120.00026 * 355.74923 * 20 19 18 22 22 O 1.21292 * 120.00048 * 175.75211 * 20 19 18 23 23 C 1.40550 * 117.67015 * 318.02054 * 19 18 16 24 24 C 1.38576 * 120.08869 * 193.66149 * 23 19 18 25 25 C 1.38250 * 119.88339 * 180.17476 * 24 23 19 26 26 C 1.38281 * 120.05899 * 0.02562 * 25 24 23 27 27 C 1.38206 * 120.29317 * 359.92792 * 26 25 24 28 28 C 1.38706 * 120.05191 * 0.02562 * 27 26 25 29 29 O 1.35902 * 119.65876 * 180.15802 * 28 27 26 30 30 H 1.08995 * 109.47119 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46954 * 300.00515 * 1 2 3 32 32 H 1.08999 * 109.46874 * 59.99921 * 1 2 3 33 33 H 1.09003 * 109.47094 * 239.99949 * 2 1 3 34 34 H 1.08999 * 109.46874 * 120.00079 * 2 1 3 35 35 H 0.96992 * 120.00356 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00212 * 264.72428 * 13 3 2 37 37 H 1.08999 * 109.83967 * 297.52471 * 18 16 14 38 38 H 1.09000 * 109.83555 * 58.49829 * 18 16 14 39 39 H 1.09001 * 109.47047 * 64.96464 * 21 20 19 40 40 H 1.08997 * 109.47006 * 184.96539 * 21 20 19 41 41 H 1.09001 * 109.47465 * 304.97005 * 21 20 19 42 42 H 1.08013 * 120.05814 * 0.15707 * 24 23 19 43 43 H 1.07998 * 119.97460 * 179.97438 * 25 24 23 44 44 H 1.08006 * 119.85481 * 179.97438 * 26 25 24 45 45 H 1.08002 * 119.97145 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0050 0.8800 1.3812 10 1 6.4428 2.1129 2.0838 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8394 0.0271 13 7 1.6526 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3391 2.6327 -0.4341 16 6 0.0368 3.3386 -2.6545 17 1 0.7791 4.0924 -2.9170 18 6 -0.0574 2.2932 -3.7750 19 7 -0.4949 2.9896 -4.9972 20 6 0.0593 2.7125 -6.1941 21 6 1.2113 1.7452 -6.2852 22 8 -0.3691 3.2417 -7.1979 23 6 -1.5108 3.9527 -4.8715 24 6 -2.1574 4.4317 -5.9996 25 6 -3.1537 5.3817 -5.8714 26 6 -3.5039 5.8534 -4.6196 27 6 -2.8629 5.3783 -3.4911 28 6 -1.8628 4.4245 -3.6100 29 8 -1.2400 3.9605 -2.4948 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8292 -0.0617 2.9496 36 1 2.2736 2.1267 -1.9964 37 1 0.9190 1.8372 -3.9385 38 1 -0.7842 1.5268 -3.5057 39 1 0.8749 0.7509 -5.9913 40 1 1.5805 1.7155 -7.3103 41 1 2.0115 2.0694 -5.6199 42 1 -1.8834 4.0638 -6.9775 43 1 -3.6583 5.7563 -6.7496 44 1 -4.2823 6.5958 -4.5232 45 1 -3.1408 5.7500 -2.5159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762721609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:14 Heat of formation + Delta-G solvation = -83.247735 kcal Electronic energy + Delta-G solvation = -29256.672466 eV Core-core repulsion = 25239.346229 eV Total energy + Delta-G solvation = -4017.326237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.65396 -40.90772 -40.08176 -38.47956 -36.93812 -36.67833 -34.40672 -33.20077 -32.31610 -31.82156 -30.70453 -29.23071 -28.56945 -26.22325 -24.96014 -24.31275 -22.98038 -21.97565 -21.23580 -20.67855 -19.48752 -19.21396 -18.61394 -17.97387 -17.42614 -17.08109 -16.94604 -16.82412 -16.38722 -16.06172 -15.83966 -15.48623 -15.06891 -14.98386 -14.77204 -14.56769 -14.45472 -14.18313 -13.75898 -13.47444 -13.41217 -13.17309 -13.12918 -12.98976 -12.87892 -12.83328 -12.67748 -12.50110 -12.20565 -12.11902 -12.04299 -11.56546 -11.37103 -11.04053 -10.84233 -10.54507 -10.47994 -9.72675 -9.56548 -8.95072 -8.13628 -6.30630 0.17284 0.33565 1.32380 1.42104 1.48095 1.48810 1.57635 1.61862 1.66748 2.42152 2.67227 2.78513 3.15898 3.18700 3.28113 3.66274 3.67385 3.82851 3.91798 4.11914 4.26486 4.30453 4.37095 4.42835 4.53155 4.54196 4.58577 4.60162 4.76443 4.79611 4.97439 5.08439 5.14848 5.26015 5.29184 5.40091 5.45163 5.52280 5.54250 5.62170 5.76446 5.82876 5.92173 6.04910 6.19244 6.26833 6.76035 6.83414 6.86338 7.32449 7.47785 8.91509 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.003203 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.285800 B = 8740.275350 C = 9568.794145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.966 3.034 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.256 1.256 13 N -0.689 5.689 14 C 0.514 3.486 15 O -0.562 6.562 16 C 0.067 3.933 17 H 0.117 0.883 18 C 0.083 3.917 19 N -0.556 5.556 20 C 0.513 3.487 21 C -0.172 4.172 22 O -0.555 6.555 23 C 0.057 3.943 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.098 4.098 27 C -0.138 4.138 28 C 0.073 3.927 29 O -0.309 6.309 30 H 0.046 0.954 31 H 0.021 0.979 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.264 0.736 36 H 0.409 0.591 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.163 0.837 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 4.690 -17.994 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.180 1.180 13 N -0.340 5.340 14 C 0.297 3.703 15 O -0.441 6.441 16 C 0.006 3.994 17 H 0.135 0.865 18 C -0.040 4.040 19 N -0.281 5.281 20 C 0.307 3.693 21 C -0.231 4.231 22 O -0.434 6.434 23 C -0.037 4.037 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.117 4.117 27 C -0.157 4.157 28 C 0.027 3.973 29 O -0.222 6.222 30 H 0.065 0.935 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.171 0.829 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.180 0.820 43 H 0.171 0.829 44 H 0.180 0.820 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.762 4.764 -17.510 19.365 hybrid contribution 1.064 -0.039 0.556 1.201 sum -5.698 4.725 -16.954 18.500 Atomic orbital electron populations 1.21707 0.97283 0.99214 1.00149 1.21792 0.93351 0.98862 1.01906 1.18439 0.93764 0.89277 0.80755 0.98416 1.21562 0.91154 1.38794 1.06768 0.90390 1.25718 1.02939 0.94505 0.95159 1.70041 1.37009 1.38350 1.09888 0.85427 0.79547 0.77095 0.78752 1.20936 1.21410 1.17982 1.46080 1.14207 1.55433 1.18276 1.19970 0.82827 0.79234 0.88230 1.90734 1.52437 1.59469 1.41413 1.22593 0.85921 0.96754 0.94135 0.86512 1.22736 1.05675 0.93822 0.81731 1.45928 1.35386 1.37575 1.09187 1.21893 0.84420 0.82521 0.80507 1.22123 0.94889 0.98680 1.07379 1.90484 1.63494 1.53367 1.36048 1.18264 0.95226 0.96127 0.94067 1.22131 0.95815 0.98374 0.99161 1.21447 0.97322 0.97336 0.98737 1.21320 0.99645 0.99872 0.90815 1.20746 0.97220 0.96446 1.01250 1.18974 0.97418 0.97187 0.83760 1.86115 1.32349 1.73386 1.30386 0.93519 0.96012 0.93653 0.92902 0.91086 0.92692 0.75493 0.82875 0.88910 0.86549 0.87448 0.86469 0.81985 0.82857 0.82043 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.12 -5.35 5.45 30.60 0.17 -5.18 16 3 C 0.28 12.99 2.24 44.25 0.10 13.09 16 4 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 5 C -0.54 -26.14 8.73 25.60 0.22 -25.92 16 6 H 0.08 3.41 7.73 -2.91 -0.02 3.39 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.91 -49.77 11.29 21.45 0.24 -49.53 16 9 Si 0.97 39.50 29.54 68.60 2.03 41.53 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -11.85 7.11 99.48 0.71 -11.15 16 12 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 13 N -0.69 -24.04 5.00 -446.10 -2.23 -26.27 16 14 C 0.51 18.40 5.75 87.65 0.50 18.91 16 15 O -0.56 -25.96 13.65 15.88 0.22 -25.74 16 16 C 0.07 1.85 3.37 30.03 0.10 1.95 16 17 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 18 C 0.08 1.71 5.78 86.40 0.50 2.21 16 19 N -0.56 -12.74 3.01 -627.71 -1.89 -14.63 16 20 C 0.51 10.72 7.76 87.66 0.68 11.40 16 21 C -0.17 -1.83 8.81 71.24 0.63 -1.21 16 22 O -0.55 -15.10 13.79 -3.07 -0.04 -15.15 16 23 C 0.06 1.55 6.34 38.06 0.24 1.80 16 24 C -0.14 -3.44 9.03 22.35 0.20 -3.24 16 25 C -0.13 -2.63 10.05 22.28 0.22 -2.40 16 26 C -0.10 -1.89 10.03 22.27 0.22 -1.67 16 27 C -0.14 -3.41 9.97 22.37 0.22 -3.19 16 28 C 0.07 2.14 6.52 22.61 0.15 2.28 16 29 O -0.31 -10.22 9.51 -73.52 -0.70 -10.92 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 32 H 0.04 1.78 5.65 -2.39 -0.01 1.76 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 3.64 5.95 -2.39 -0.01 3.63 16 35 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 36 H 0.41 10.82 8.48 -92.71 -0.79 10.04 16 37 H 0.15 1.92 6.14 -2.39 -0.01 1.90 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 1.04 8.12 -2.39 -0.02 1.02 16 41 H 0.12 0.77 7.47 -2.39 -0.02 0.75 16 42 H 0.16 4.41 4.91 -20.00 -0.10 4.32 16 43 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 44 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.98 363.81 3.01 -68.97 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.16 Total: 26.24 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 5.22 Total: 5.51 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -3.88 Total: -90.44 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -0.52 Total: -51.81 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -71.98 3.01 -68.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762721609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.279 kcal (2) G-P(sol) polarization free energy of solvation -71.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds