Wall clock time and date at job start Tue Mar 31 2020 17:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39282 * 125.81969 * 2 1 4 4 C 1.38662 * 133.33504 * 0.05645 * 3 2 1 5 5 C 1.38106 * 119.85146 * 179.97438 * 4 3 2 6 6 C 1.38433 * 120.28559 * 0.02562 * 5 4 3 7 7 C 1.38119 * 120.28109 * 359.95682 * 6 5 4 8 8 C 1.38660 * 119.85145 * 0.04749 * 7 6 5 9 9 N 1.39278 * 133.33672 * 180.02562 * 8 7 6 10 10 C 1.46497 * 125.81958 * 359.94586 * 9 8 7 11 11 C 1.50700 * 109.47128 * 90.00208 * 10 9 8 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47505 * 300.00350 * 15 14 13 17 17 C 1.52998 * 109.46989 * 60.00116 * 15 14 13 18 18 C 1.50703 * 109.47221 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99956 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00171 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99797 * 359.97438 * 20 18 15 22 22 Si 1.86793 * 120.00142 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47365 * 90.00159 * 22 20 18 24 24 H 1.48501 * 109.47237 * 209.99905 * 22 20 18 25 25 H 1.48498 * 109.47427 * 329.99821 * 22 20 18 26 26 C 1.34642 * 108.36587 * 180.21610 * 9 8 7 27 27 O 1.21680 * 125.16425 * 179.73433 * 26 9 8 28 28 H 1.08997 * 109.46977 * 90.00326 * 1 2 3 29 29 H 1.09000 * 109.47196 * 210.00244 * 1 2 3 30 30 H 1.09001 * 109.46840 * 329.99940 * 1 2 3 31 31 H 1.08009 * 120.07015 * 359.95021 * 4 3 2 32 32 H 1.08003 * 119.85477 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.86127 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.06967 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47268 * 330.00348 * 10 9 8 36 36 H 1.08997 * 109.47471 * 210.00755 * 10 9 8 37 37 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 38 38 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 39 39 H 1.08999 * 109.46743 * 59.99340 * 16 15 14 40 40 H 1.08995 * 109.47247 * 180.02562 * 16 15 14 41 41 H 1.08999 * 109.46824 * 300.00005 * 16 15 14 42 42 H 1.09004 * 109.47306 * 60.00196 * 17 15 14 43 43 H 1.09006 * 109.47255 * 180.02562 * 17 15 14 44 44 H 1.09003 * 109.47378 * 299.99864 * 17 15 14 45 45 H 0.97004 * 120.00040 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1294 0.0000 4 6 2.0192 2.4912 0.0010 5 6 3.0663 3.3918 0.0012 6 6 4.3751 2.9407 -0.0001 7 6 4.6448 1.5861 -0.0007 8 6 3.6002 0.6743 -0.0010 9 7 3.5462 -0.7174 -0.0012 10 6 4.7000 -1.6202 -0.0022 11 6 5.0966 -1.9300 1.4183 12 8 4.4786 -1.4467 2.3372 13 8 6.1365 -2.7429 1.6627 14 6 6.4620 -2.9964 3.0548 15 6 7.6653 -3.9380 3.1339 16 6 7.3256 -5.2591 2.4408 17 6 8.8653 -3.2915 2.4391 18 6 8.0028 -4.2016 4.5788 19 1 7.4178 -3.7431 5.3623 20 6 9.0590 -5.0274 4.9005 21 7 9.7717 -5.5854 3.9463 22 14 9.4778 -5.3536 6.6914 23 1 8.7264 -6.5429 7.1668 24 1 10.9356 -5.6049 6.8210 25 1 9.1045 -4.1723 7.5102 26 6 2.2529 -1.0918 -0.0063 27 8 1.8563 -2.2422 -0.0125 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.9994 2.8469 0.0012 32 1 2.8631 4.4525 0.0016 33 1 5.1886 3.6509 -0.0003 34 1 5.6671 1.2379 -0.0013 35 1 5.5342 -1.1431 -0.5165 36 1 4.4374 -2.5449 -0.5161 37 1 6.7036 -2.0553 3.5487 38 1 5.6072 -3.4574 3.5497 39 1 7.0812 -5.0687 1.3957 40 1 8.1827 -5.9301 2.4975 41 1 6.4707 -5.7197 2.9357 42 1 9.1074 -2.3503 2.9329 43 1 9.7225 -3.9625 2.4950 44 1 8.6210 -3.1011 1.3940 45 1 10.5151 -6.1661 4.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764834231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:35 Heat of formation + Delta-G solvation = -52.513062 kcal Electronic energy + Delta-G solvation = -28598.480118 eV Core-core repulsion = 24582.486636 eV Total energy + Delta-G solvation = -4015.993482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.72624 -39.97510 -38.53604 -36.85782 -36.07460 -35.67889 -34.86396 -31.38783 -30.84395 -30.64303 -28.67443 -27.03845 -25.63468 -25.55291 -24.98048 -22.83232 -22.67008 -21.65767 -20.27040 -18.88781 -18.22460 -17.75480 -17.71610 -16.54679 -16.29349 -15.98915 -15.94485 -15.66562 -15.10031 -14.67790 -14.59864 -14.39475 -14.36096 -13.73506 -13.36908 -13.20977 -13.12537 -12.78890 -12.75976 -12.45392 -12.28813 -11.89024 -11.48412 -11.43660 -11.24711 -11.05278 -10.98104 -10.72661 -10.71923 -10.68332 -10.43432 -10.25151 -10.09355 -9.93393 -9.43859 -9.34913 -8.77971 -8.66091 -8.38876 -8.01717 -6.03372 -4.15050 0.94988 1.10580 1.76215 2.45295 2.62571 2.89337 3.26133 3.27410 3.34232 3.38652 3.48741 4.18975 4.37281 4.38525 4.63180 4.72415 4.87600 4.92484 5.00704 5.03011 5.10393 5.15406 5.23134 5.24277 5.33621 5.47107 5.77624 5.99491 6.04016 6.07576 6.20407 6.22355 6.34231 6.43723 6.51036 6.71146 6.96410 6.99876 7.06152 7.10978 7.13733 7.38228 7.60664 7.68803 7.96468 8.03751 8.09007 8.18410 8.37412 8.84740 9.50572 10.97866 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002640 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.680080 B =10604.423128 C =11122.273494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.543 5.543 3 C 0.093 3.907 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.101 4.101 8 C 0.099 3.901 9 N -0.526 5.526 10 C 0.139 3.861 11 C 0.436 3.564 12 O -0.505 6.505 13 O -0.345 6.345 14 C 0.086 3.914 15 C 0.071 3.929 16 C -0.131 4.131 17 C -0.129 4.129 18 C -0.513 4.513 19 H 0.057 0.943 20 C 0.069 3.931 21 N -0.882 5.882 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.688 3.312 27 O -0.548 6.548 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.085 0.915 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.085 0.915 44 H 0.017 0.983 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.305 17.384 -12.722 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.265 5.265 3 C -0.008 4.008 4 C -0.128 4.128 5 C -0.131 4.131 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.001 4.001 9 N -0.247 5.247 10 C 0.016 3.984 11 C 0.276 3.724 12 O -0.393 6.393 13 O -0.260 6.260 14 C 0.013 3.987 15 C 0.070 3.930 16 C -0.188 4.188 17 C -0.187 4.187 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.133 4.133 21 N -0.520 5.520 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C 0.391 3.609 27 O -0.423 6.423 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.644 16.401 -12.425 24.689 hybrid contribution 0.148 -0.221 1.300 1.327 sum -13.496 16.180 -11.124 23.826 Atomic orbital electron populations 1.21730 0.74740 1.04420 1.03005 1.44936 1.07163 1.04481 1.69886 1.18063 0.87952 0.89334 1.05447 1.20028 1.00251 0.88387 1.04128 1.20851 0.91896 0.99332 1.01040 1.20871 0.97103 0.94178 1.00770 1.20147 0.97319 0.91884 1.02886 1.18058 0.94426 0.82801 1.04865 1.44606 1.06098 1.04651 1.69380 1.20920 0.87939 0.96434 0.93143 1.23742 0.79258 0.77196 0.92191 1.90667 1.52484 1.49804 1.46351 1.86502 1.45229 1.59649 1.34600 1.23728 0.99784 1.00092 0.75060 1.18254 0.88281 0.90469 0.95959 1.21783 1.01277 0.99891 0.95878 1.21774 1.01718 0.99431 0.95782 1.20936 1.14684 1.29096 0.90399 0.92525 1.24851 0.95738 0.95307 0.97409 1.69830 1.19528 1.31323 1.31335 0.86533 0.77510 0.78685 0.84922 1.20619 1.21114 1.19901 1.15848 0.80408 0.84625 0.80043 1.91051 1.76374 1.16832 1.57994 0.91272 0.89424 0.89885 0.85330 0.84999 0.84866 0.85123 0.85028 0.84660 0.92466 0.92501 0.96388 0.89666 0.95797 0.95821 0.89673 0.96433 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.00 59.85 0.66 1.50 16 2 N -0.54 -6.76 3.18 -126.33 -0.40 -7.16 16 3 C 0.09 1.06 6.83 -83.80 -0.57 0.49 16 4 C -0.11 -0.88 10.02 -39.47 -0.40 -1.28 16 5 C -0.11 -0.80 10.03 -39.56 -0.40 -1.19 16 6 C -0.11 -0.86 10.03 -39.55 -0.40 -1.26 16 7 C -0.10 -1.02 10.02 -39.47 -0.40 -1.41 16 8 C 0.10 1.24 6.83 -83.80 -0.57 0.67 16 9 N -0.53 -7.53 2.27 -120.20 -0.27 -7.80 16 10 C 0.14 1.84 6.57 -5.20 -0.03 1.81 16 11 C 0.44 7.85 8.03 36.01 0.29 8.14 16 12 O -0.50 -10.72 16.18 -18.75 -0.30 -11.03 16 13 O -0.34 -6.83 8.88 -39.27 -0.35 -7.18 16 14 C 0.09 1.94 4.26 37.16 0.16 2.09 16 15 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 16 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 17 C -0.13 -3.07 8.11 37.16 0.30 -2.77 16 18 C -0.51 -13.82 8.01 -34.44 -0.28 -14.10 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 21 N -0.88 -23.98 9.35 55.43 0.52 -23.46 16 22 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.69 10.87 8.45 -87.16 -0.74 10.14 16 27 O -0.55 -10.28 17.48 5.21 0.09 -10.19 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.14 1.64 8.03 -51.93 -0.42 1.22 16 37 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 38 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 39 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 40 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 44 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -34.15 379.05 -8.73 -42.88 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.45 Total: -1.03 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.25 Total: 3.34 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.16 Total: -38.42 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.56 Total: -28.40 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.15 -8.73 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.635 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds