Wall clock time and date at job start Tue Mar 31 2020 17:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39282 * 125.81969 * 2 1 4 4 C 1.38662 * 133.33504 * 0.05645 * 3 2 1 5 5 C 1.38106 * 119.85146 * 179.97438 * 4 3 2 6 6 C 1.38433 * 120.28559 * 0.02562 * 5 4 3 7 7 C 1.38119 * 120.28109 * 359.95682 * 6 5 4 8 8 C 1.38660 * 119.85145 * 0.04749 * 7 6 5 9 9 N 1.39278 * 133.33672 * 180.02562 * 8 7 6 10 10 C 1.46497 * 125.81958 * 359.94586 * 9 8 7 11 11 C 1.50700 * 109.47128 * 90.00208 * 10 9 8 12 12 O 1.20822 * 119.99958 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00068 * 180.02562 * 11 10 9 14 14 C 1.45196 * 116.99938 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47070 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47505 * 300.00350 * 15 14 13 17 17 C 1.52998 * 109.46989 * 60.00116 * 15 14 13 18 18 C 1.50703 * 109.47221 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99956 * 359.97438 * 18 15 14 20 20 C 1.37876 * 120.00171 * 180.02562 * 18 15 14 21 21 N 1.31521 * 119.99797 * 359.97438 * 20 18 15 22 22 Si 1.86793 * 120.00142 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47365 * 90.00159 * 22 20 18 24 24 H 1.48501 * 109.47237 * 209.99905 * 22 20 18 25 25 H 1.48498 * 109.47427 * 329.99821 * 22 20 18 26 26 C 1.34642 * 108.36587 * 180.21610 * 9 8 7 27 27 O 1.21680 * 125.16425 * 179.73433 * 26 9 8 28 28 H 1.08997 * 109.46977 * 90.00326 * 1 2 3 29 29 H 1.09000 * 109.47196 * 210.00244 * 1 2 3 30 30 H 1.09001 * 109.46840 * 329.99940 * 1 2 3 31 31 H 1.08009 * 120.07015 * 359.95021 * 4 3 2 32 32 H 1.08003 * 119.85477 * 179.97438 * 5 4 3 33 33 H 1.07999 * 119.86127 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.06967 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47268 * 330.00348 * 10 9 8 36 36 H 1.08997 * 109.47471 * 210.00755 * 10 9 8 37 37 H 1.08996 * 109.47465 * 299.99911 * 14 13 11 38 38 H 1.08999 * 109.47008 * 59.99921 * 14 13 11 39 39 H 1.08999 * 109.46743 * 59.99340 * 16 15 14 40 40 H 1.08995 * 109.47247 * 180.02562 * 16 15 14 41 41 H 1.08999 * 109.46824 * 300.00005 * 16 15 14 42 42 H 1.09004 * 109.47306 * 60.00196 * 17 15 14 43 43 H 1.09006 * 109.47255 * 180.02562 * 17 15 14 44 44 H 1.09003 * 109.47378 * 299.99864 * 17 15 14 45 45 H 0.97004 * 120.00040 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.1294 0.0000 4 6 2.0192 2.4912 0.0010 5 6 3.0663 3.3918 0.0012 6 6 4.3751 2.9407 -0.0001 7 6 4.6448 1.5861 -0.0007 8 6 3.6002 0.6743 -0.0010 9 7 3.5462 -0.7174 -0.0012 10 6 4.7000 -1.6202 -0.0022 11 6 5.0966 -1.9300 1.4183 12 8 4.4786 -1.4467 2.3372 13 8 6.1365 -2.7429 1.6627 14 6 6.4620 -2.9964 3.0548 15 6 7.6653 -3.9380 3.1339 16 6 7.3256 -5.2591 2.4408 17 6 8.8653 -3.2915 2.4391 18 6 8.0028 -4.2016 4.5788 19 1 7.4178 -3.7431 5.3623 20 6 9.0590 -5.0274 4.9005 21 7 9.7717 -5.5854 3.9463 22 14 9.4778 -5.3536 6.6914 23 1 8.7264 -6.5429 7.1668 24 1 10.9356 -5.6049 6.8210 25 1 9.1045 -4.1723 7.5102 26 6 2.2529 -1.0918 -0.0063 27 8 1.8563 -2.2422 -0.0125 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.9994 2.8469 0.0012 32 1 2.8631 4.4525 0.0016 33 1 5.1886 3.6509 -0.0003 34 1 5.6671 1.2379 -0.0013 35 1 5.5342 -1.1431 -0.5165 36 1 4.4374 -2.5449 -0.5161 37 1 6.7036 -2.0553 3.5487 38 1 5.6072 -3.4574 3.5497 39 1 7.0812 -5.0687 1.3957 40 1 8.1827 -5.9301 2.4975 41 1 6.4707 -5.7197 2.9357 42 1 9.1074 -2.3503 2.9329 43 1 9.7225 -3.9625 2.4950 44 1 8.6210 -3.1011 1.3940 45 1 10.5151 -6.1661 4.1725 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764834231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:34 Heat of formation + Delta-G solvation = -70.568601 kcal Electronic energy + Delta-G solvation = -28599.263064 eV Core-core repulsion = 24582.486636 eV Total energy + Delta-G solvation = -4016.776429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.64434 -41.50666 -39.42999 -38.50085 -37.03793 -36.85210 -36.54117 -33.33668 -31.78662 -31.37963 -29.54332 -28.11973 -27.58975 -27.38375 -26.73522 -23.67739 -23.45919 -22.89496 -21.37435 -20.78055 -19.15447 -19.02647 -18.66450 -17.87976 -17.68617 -17.60557 -17.15087 -17.09238 -16.55666 -16.12015 -15.42451 -15.23060 -15.04741 -15.03471 -14.81429 -14.71115 -14.41321 -14.04252 -13.66320 -13.59888 -13.40663 -13.24972 -13.16694 -13.06632 -12.85242 -12.65717 -12.35275 -12.23040 -12.14541 -12.05369 -11.82859 -11.78330 -11.56400 -11.47811 -11.33831 -11.19127 -10.76741 -10.42681 -9.39826 -8.88473 -8.07197 -6.25570 0.24889 0.37983 0.79895 1.01584 1.41334 1.42515 1.47776 1.53101 1.88156 2.15347 2.43384 2.79325 3.16143 3.43324 3.53487 3.60707 3.94859 3.98098 4.05436 4.19991 4.20849 4.25770 4.36769 4.42303 4.45218 4.55413 4.58460 4.68935 4.80769 4.84864 5.02092 5.04195 5.16692 5.20999 5.21702 5.31114 5.48872 5.49636 5.57383 5.61672 5.62298 5.62806 5.76575 6.05848 6.15245 6.21376 6.34406 6.58662 6.78877 6.93136 7.42492 8.92453 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002640 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.680080 B =10604.423128 C =11122.273494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.541 5.541 3 C 0.070 3.930 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.105 4.105 7 C -0.113 4.113 8 C 0.063 3.937 9 N -0.530 5.530 10 C 0.144 3.856 11 C 0.436 3.564 12 O -0.540 6.540 13 O -0.344 6.344 14 C 0.099 3.901 15 C 0.063 3.937 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.538 4.538 19 H 0.047 0.953 20 C 0.030 3.970 21 N -0.898 5.898 22 Si 0.952 3.048 23 H -0.279 1.279 24 H -0.278 1.278 25 H -0.273 1.273 26 C 0.667 3.333 27 O -0.596 6.596 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.015 0.985 42 H 0.022 0.978 43 H 0.064 0.936 44 H 0.037 0.963 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 20.308 -13.541 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.262 5.262 3 C -0.030 4.030 4 C -0.123 4.123 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.134 4.134 8 C -0.036 4.036 9 N -0.251 5.251 10 C 0.021 3.979 11 C 0.279 3.721 12 O -0.430 6.430 13 O -0.259 6.259 14 C 0.026 3.974 15 C 0.062 3.938 16 C -0.179 4.179 17 C -0.176 4.176 18 C -0.576 4.576 19 H 0.065 0.935 20 C -0.171 4.171 21 N -0.536 5.536 22 Si 0.778 3.222 23 H -0.205 1.205 24 H -0.204 1.204 25 H -0.198 1.198 26 C 0.370 3.630 27 O -0.476 6.476 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.176 0.824 32 H 0.186 0.814 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.193 0.807 36 H 0.164 0.836 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.842 19.391 -13.264 27.268 hybrid contribution 0.171 -0.958 1.516 1.802 sum -13.670 18.433 -11.748 25.781 Atomic orbital electron populations 1.22029 0.72841 1.05213 1.04511 1.45099 1.08312 1.04052 1.68777 1.18477 0.87425 0.90191 1.06866 1.20477 1.02277 0.86953 1.02557 1.21357 0.91162 1.00972 0.98614 1.21313 0.98586 0.93619 0.98960 1.20445 0.97232 0.92631 1.03121 1.18481 0.95919 0.82040 1.07186 1.44661 1.05677 1.05758 1.69004 1.21173 0.89293 0.97663 0.89758 1.24746 0.77826 0.75649 0.93924 1.90647 1.53359 1.51066 1.47978 1.86491 1.46318 1.60447 1.32658 1.23280 0.98376 0.99198 0.76579 1.18268 0.89387 0.91030 0.95082 1.21655 0.99993 0.99394 0.96850 1.21617 1.00415 0.98650 0.96911 1.21198 1.15126 1.29710 0.91523 0.93516 1.25491 0.95595 0.95066 1.00898 1.69933 1.19602 1.31332 1.32727 0.85652 0.77456 0.78352 0.80732 1.20465 1.20361 1.19818 1.16209 0.81309 0.84859 0.80608 1.90987 1.77327 1.18690 1.60578 0.89426 0.90886 0.86809 0.82418 0.81365 0.82070 0.84424 0.80746 0.83644 0.92964 0.94104 0.94639 0.91565 0.96604 0.95876 0.91747 0.94397 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 11.00 127.77 1.41 2.88 16 2 N -0.54 -13.35 3.18 -671.88 -2.14 -15.49 16 3 C 0.07 1.51 6.83 38.40 0.26 1.77 16 4 C -0.10 -1.34 10.02 22.34 0.22 -1.11 16 5 C -0.10 -1.01 10.03 22.28 0.22 -0.79 16 6 C -0.11 -1.28 10.03 22.29 0.22 -1.06 16 7 C -0.11 -2.06 10.02 22.34 0.22 -1.83 16 8 C 0.06 1.51 6.83 38.40 0.26 1.78 16 9 N -0.53 -15.19 2.27 -652.50 -1.48 -16.67 16 10 C 0.14 3.74 6.57 85.63 0.56 4.31 16 11 C 0.44 15.80 8.03 71.24 0.57 16.38 16 12 O -0.54 -23.53 16.18 21.98 0.36 -23.17 16 13 O -0.34 -13.61 8.88 -51.46 -0.46 -14.07 16 14 C 0.10 4.54 4.26 71.98 0.31 4.85 16 15 C 0.06 3.11 0.58 -52.93 -0.03 3.08 16 16 C -0.12 -5.96 8.11 71.98 0.58 -5.37 16 17 C -0.12 -5.59 8.11 71.98 0.58 -5.01 16 18 C -0.54 -29.38 8.01 25.60 0.21 -29.18 16 19 H 0.05 2.58 7.74 -2.91 -0.02 2.55 16 20 C 0.03 1.60 5.15 84.65 0.44 2.04 16 21 N -0.90 -49.05 9.35 21.45 0.20 -48.85 16 22 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 C 0.67 21.73 8.45 179.14 1.51 23.24 16 27 O -0.60 -23.59 17.48 -4.28 -0.07 -23.67 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 30 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 32 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 33 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 35 H 0.18 2.91 8.14 -2.38 -0.02 2.89 16 36 H 0.15 3.50 8.03 -2.39 -0.02 3.48 16 37 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 38 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 39 H 0.03 1.56 7.68 -2.39 -0.02 1.54 16 40 H 0.07 3.50 6.07 -2.39 -0.01 3.49 16 41 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 44 H 0.04 1.58 7.68 -2.39 -0.02 1.57 16 45 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -76.77 379.05 6.98 -69.79 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.07 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 7.56 Total: 15.97 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -3.42 Total: -81.01 kcal Atomic # 8 Polarization: -60.73 SS G_CDS: -0.18 Total: -60.90 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.77 6.98 -69.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764834231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.781 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds