Wall clock time and date at job start Tue Mar 31 2020 17:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46948 * 2 1 4 4 N 1.46493 * 109.46897 * 179.97438 * 3 2 1 5 5 C 1.34529 * 126.69584 * 269.97568 * 4 3 2 6 6 O 1.21533 * 123.76594 * 0.02562 * 5 4 3 7 7 N 1.33788 * 112.45902 * 180.02562 * 5 4 3 8 8 C 1.39596 * 124.17459 * 179.97438 * 7 5 4 9 9 C 1.39409 * 119.82884 * 353.59691 * 8 7 5 10 10 C 1.36410 * 120.17418 * 179.71458 * 9 8 7 11 11 C 1.40850 * 119.81999 * 0.57686 * 10 9 8 12 12 C 1.41184 * 120.16643 * 179.67030 * 11 10 9 13 13 H 1.08000 * 119.99763 * 208.06606 * 12 11 10 14 14 C 1.39920 * 119.99714 * 28.07889 * 12 11 10 15 15 N 1.30857 * 120.00169 * 13.66171 * 14 12 11 16 16 Si 1.86798 * 119.99564 * 193.66593 * 14 12 11 17 17 H 1.48504 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47430 * 119.99762 * 16 14 12 19 19 H 1.48506 * 109.46960 * 240.00037 * 16 14 12 20 20 C 1.40850 * 119.66295 * 359.70280 * 11 10 9 21 21 C 1.36411 * 119.81784 * 359.97438 * 20 11 10 22 22 C 1.34763 * 111.64861 * 0.02562 * 7 5 4 23 23 O 1.21229 * 127.16164 * 179.97438 * 22 7 5 24 24 C 1.47318 * 126.68654 * 90.00395 * 4 3 2 25 25 H 1.08996 * 110.59726 * 298.50053 * 24 4 3 26 26 C 1.52999 * 110.59959 * 61.45157 * 24 4 3 27 27 O 1.42901 * 109.47061 * 60.62205 * 26 24 4 28 28 C 1.42903 * 113.99947 * 179.97438 * 27 26 24 29 29 H 1.08997 * 109.46611 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47133 * 299.99396 * 1 2 3 31 31 H 1.08999 * 109.46925 * 60.00044 * 1 2 3 32 32 H 1.09001 * 109.47133 * 240.00604 * 2 1 3 33 33 H 1.08994 * 109.47269 * 120.00249 * 2 1 3 34 34 H 1.09001 * 109.46711 * 60.00345 * 3 2 1 35 35 H 1.09000 * 109.47013 * 300.00483 * 3 2 1 36 36 H 1.07997 * 119.90856 * 359.97438 * 9 8 7 37 37 H 1.08004 * 120.08235 * 180.27312 * 10 9 8 38 38 H 0.96998 * 119.99633 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.08919 * 180.02562 * 20 11 10 40 40 H 1.07998 * 119.90883 * 180.02562 * 21 20 11 41 41 H 1.08993 * 109.47171 * 180.62394 * 26 24 4 42 42 H 1.08997 * 109.47139 * 300.62571 * 26 24 4 43 43 H 1.09006 * 109.46585 * 60.00415 * 28 27 26 44 44 H 1.09000 * 109.47150 * 180.02562 * 28 27 26 45 45 H 1.08992 * 109.47536 * 300.01015 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3084 1.4432 1.0796 6 8 3.9015 1.4434 2.2248 7 7 5.6054 1.4435 0.7512 8 6 6.6490 1.4447 1.6782 9 6 6.3693 1.5805 3.0372 10 6 7.3833 1.5767 3.9496 11 6 8.7166 1.4473 3.5145 12 6 9.7722 1.4495 4.4520 13 1 10.7518 1.7995 4.1615 14 6 9.5493 0.9980 5.7575 15 7 8.4598 0.3315 6.0423 16 14 10.8071 1.3469 7.0938 17 1 11.9424 2.1114 6.5177 18 1 10.1725 2.1421 8.1755 19 1 11.3067 0.0639 7.6505 20 6 8.9915 1.3165 2.1393 21 6 7.9660 1.3155 1.2397 22 6 5.7798 1.4437 -0.5851 23 8 6.8325 1.4445 -1.1863 24 6 4.3856 1.4425 -1.1804 25 1 4.2245 0.5458 -1.7787 26 6 4.1587 2.7004 -2.0212 27 8 4.4559 3.8575 -1.2370 28 6 4.2760 5.0929 -1.9324 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 5.3468 1.6847 3.3687 37 1 7.1645 1.6775 5.0025 38 1 8.3052 0.0189 6.9474 39 1 10.0112 1.2165 1.7981 40 1 8.1751 1.2148 0.1850 41 1 4.8104 2.6762 -2.8945 42 1 3.1186 2.7383 -2.3449 43 1 3.2384 5.1806 -2.2546 44 1 4.5223 5.9222 -1.2694 45 1 4.9303 5.1180 -2.8037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771828624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:08 Heat of formation + Delta-G solvation = -53.119939 kcal Electronic energy + Delta-G solvation = -29156.075880 eV Core-core repulsion = 25140.056082 eV Total energy + Delta-G solvation = -4016.019798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.29270 -38.41022 -38.27895 -37.36940 -36.11907 -35.34166 -33.93831 -32.83110 -30.19476 -29.58753 -29.26816 -27.06548 -26.43165 -25.06893 -24.14323 -22.55430 -21.87645 -21.21495 -20.12269 -19.72293 -17.62593 -17.30652 -16.96853 -16.56547 -16.26700 -16.02134 -15.53583 -15.29332 -15.12025 -14.82027 -14.67759 -14.12001 -14.02916 -13.76208 -13.33432 -13.08425 -12.85027 -12.66192 -12.52868 -12.29226 -12.23462 -12.03493 -11.86980 -11.62326 -11.57261 -11.53046 -11.21579 -11.05434 -10.92198 -10.71596 -10.33496 -10.13745 -9.95883 -9.81264 -9.40067 -9.12507 -8.92568 -8.81450 -7.51492 -7.04917 -6.72213 -4.31570 1.91796 2.37579 2.62306 3.07456 3.09509 3.14188 3.15359 3.19943 3.45981 3.70423 3.95302 4.11323 4.52225 4.64504 4.69400 4.76942 4.91278 4.97371 5.00319 5.07311 5.11230 5.16827 5.22153 5.41451 5.51675 5.55012 5.66840 5.72322 5.81926 5.99144 6.06477 6.19167 6.36994 6.48383 6.67665 6.84867 6.93909 7.05835 7.17346 7.25628 7.57588 7.65701 7.72759 7.93272 8.07299 8.15472 8.29223 8.57934 8.64731 8.89288 8.98283 10.21341 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003276 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.901018 B = 8543.973173 C = 9557.148245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.155 3.845 4 N -0.622 5.622 5 C 0.703 3.297 6 O -0.531 6.531 7 N -0.481 5.481 8 C -0.022 4.022 9 C -0.104 4.104 10 C -0.152 4.152 11 C 0.110 3.890 12 C -0.456 4.456 13 H 0.080 0.920 14 C 0.073 3.927 15 N -0.792 5.792 16 Si 0.911 3.089 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.214 4.214 21 C -0.096 4.096 22 C 0.524 3.476 23 O -0.470 6.470 24 C 0.093 3.907 25 H 0.134 0.866 26 C 0.065 3.935 27 O -0.381 6.381 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.281 0.719 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.041 0.959 44 H 0.088 0.912 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 2.887 -14.965 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.034 3.966 4 N -0.362 5.362 5 C 0.406 3.594 6 O -0.405 6.405 7 N -0.216 5.216 8 C -0.111 4.111 9 C -0.124 4.124 10 C -0.172 4.172 11 C 0.107 3.893 12 C -0.485 4.485 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.417 5.417 16 Si 0.735 3.265 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.234 4.234 21 C -0.116 4.116 22 C 0.311 3.689 23 O -0.342 6.342 24 C -0.015 4.015 25 H 0.152 0.848 26 C -0.013 4.013 27 O -0.299 6.299 28 C -0.062 4.062 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.172 2.758 -14.214 20.261 hybrid contribution 0.405 0.043 0.282 0.496 sum -13.767 2.802 -13.932 19.786 Atomic orbital electron populations 1.21676 0.94843 1.02098 1.01946 1.22003 0.96255 0.97189 1.03108 1.21297 0.74744 0.97019 1.03505 1.47603 1.05769 1.78084 1.04732 1.15810 0.80682 0.77803 0.85077 1.90834 1.76829 1.54491 1.18298 1.43173 1.06869 1.63487 1.08038 1.17276 0.84773 1.21333 0.87710 1.21016 1.00708 1.00105 0.90546 1.20988 0.91994 1.05300 0.98871 1.17780 0.93107 0.86982 0.91429 1.19623 0.97469 1.37117 0.94335 0.90230 1.25950 0.96157 0.92664 0.99738 1.69836 1.24915 1.25379 1.21561 0.86220 0.81009 0.79016 0.80224 1.18406 1.19700 1.19987 1.20637 0.96818 1.12443 0.93494 1.20577 0.90531 1.00686 0.99760 1.20344 0.90314 0.75923 0.82300 1.90669 1.30149 1.46999 1.66365 1.22199 0.89145 0.99959 0.90175 0.84834 1.22605 1.00729 0.84561 0.93409 1.88023 1.89327 1.13652 1.38914 1.22747 0.99622 0.86204 0.97593 0.92343 0.92301 0.92682 0.91738 0.90990 0.89294 0.90205 0.85210 0.85944 0.90825 0.88257 0.86201 0.90774 0.91529 0.94076 0.89371 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.15 -1.31 6.26 -26.72 -0.17 -1.48 16 3 C 0.16 1.55 6.02 -4.04 -0.02 1.53 16 4 N -0.62 -8.57 2.65 -172.40 -0.46 -9.03 16 5 C 0.70 13.58 8.22 -88.02 -0.72 12.86 16 6 O -0.53 -11.78 14.29 5.34 0.08 -11.71 16 7 N -0.48 -10.10 2.81 -64.20 -0.18 -10.28 16 8 C -0.02 -0.54 6.57 -83.45 -0.55 -1.08 16 9 C -0.10 -2.73 9.18 -39.80 -0.37 -3.09 16 10 C -0.15 -4.17 8.61 -39.25 -0.34 -4.51 16 11 C 0.11 3.03 5.55 -106.80 -0.59 2.44 16 12 C -0.46 -12.32 9.04 -37.83 -0.34 -12.66 16 13 H 0.08 2.06 7.88 -52.49 -0.41 1.64 16 14 C 0.07 1.86 5.20 -17.34 -0.09 1.77 16 15 N -0.79 -20.97 10.95 55.55 0.61 -20.36 16 16 Si 0.91 18.97 29.58 -169.99 -5.03 13.94 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 C -0.21 -5.54 9.74 -39.25 -0.38 -5.92 16 21 C -0.10 -2.38 9.24 -39.80 -0.37 -2.75 16 22 C 0.52 9.42 7.03 -10.55 -0.07 9.35 16 23 O -0.47 -9.31 15.02 5.60 0.08 -9.23 16 24 C 0.09 1.15 3.86 -68.20 -0.26 0.88 16 25 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 26 C 0.07 0.65 5.70 37.16 0.21 0.86 16 27 O -0.38 -5.03 10.10 -35.23 -0.36 -5.39 16 28 C 0.03 0.32 11.01 101.05 1.11 1.43 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.08 0.56 7.34 -51.93 -0.38 0.18 16 36 H 0.13 3.38 5.14 -52.49 -0.27 3.11 16 37 H 0.12 3.45 6.27 -52.48 -0.33 3.12 16 38 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 39 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.12 2.85 5.32 -52.49 -0.28 2.57 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.46 7.41 -51.93 -0.38 0.07 16 43 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -33.20 373.03 -8.48 -41.68 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.26 Total: 5.78 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.59 Total: -1.03 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: -0.03 Total: -39.67 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.20 Total: -26.32 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -8.48 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.440 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds