Wall clock time and date at job start Tue Mar 31 2020 17:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46948 * 2 1 4 4 N 1.46493 * 109.46897 * 179.97438 * 3 2 1 5 5 C 1.34529 * 126.69584 * 269.97568 * 4 3 2 6 6 O 1.21533 * 123.76594 * 0.02562 * 5 4 3 7 7 N 1.33788 * 112.45902 * 180.02562 * 5 4 3 8 8 C 1.39596 * 124.17459 * 179.97438 * 7 5 4 9 9 C 1.39409 * 119.82884 * 353.59691 * 8 7 5 10 10 C 1.36410 * 120.17418 * 179.71458 * 9 8 7 11 11 C 1.40850 * 119.81999 * 0.57686 * 10 9 8 12 12 C 1.41184 * 120.16643 * 179.67030 * 11 10 9 13 13 H 1.08000 * 119.99763 * 208.06606 * 12 11 10 14 14 C 1.39920 * 119.99714 * 28.07889 * 12 11 10 15 15 N 1.30857 * 120.00169 * 13.66171 * 14 12 11 16 16 Si 1.86798 * 119.99564 * 193.66593 * 14 12 11 17 17 H 1.48504 * 109.47196 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47430 * 119.99762 * 16 14 12 19 19 H 1.48506 * 109.46960 * 240.00037 * 16 14 12 20 20 C 1.40850 * 119.66295 * 359.70280 * 11 10 9 21 21 C 1.36411 * 119.81784 * 359.97438 * 20 11 10 22 22 C 1.34763 * 111.64861 * 0.02562 * 7 5 4 23 23 O 1.21229 * 127.16164 * 179.97438 * 22 7 5 24 24 C 1.47318 * 126.68654 * 90.00395 * 4 3 2 25 25 H 1.08996 * 110.59726 * 298.50053 * 24 4 3 26 26 C 1.52999 * 110.59959 * 61.45157 * 24 4 3 27 27 O 1.42901 * 109.47061 * 60.62205 * 26 24 4 28 28 C 1.42903 * 113.99947 * 179.97438 * 27 26 24 29 29 H 1.08997 * 109.46611 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47133 * 299.99396 * 1 2 3 31 31 H 1.08999 * 109.46925 * 60.00044 * 1 2 3 32 32 H 1.09001 * 109.47133 * 240.00604 * 2 1 3 33 33 H 1.08994 * 109.47269 * 120.00249 * 2 1 3 34 34 H 1.09001 * 109.46711 * 60.00345 * 3 2 1 35 35 H 1.09000 * 109.47013 * 300.00483 * 3 2 1 36 36 H 1.07997 * 119.90856 * 359.97438 * 9 8 7 37 37 H 1.08004 * 120.08235 * 180.27312 * 10 9 8 38 38 H 0.96998 * 119.99633 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.08919 * 180.02562 * 20 11 10 40 40 H 1.07998 * 119.90883 * 180.02562 * 21 20 11 41 41 H 1.08993 * 109.47171 * 180.62394 * 26 24 4 42 42 H 1.08997 * 109.47139 * 300.62571 * 26 24 4 43 43 H 1.09006 * 109.46585 * 60.00415 * 28 27 26 44 44 H 1.09000 * 109.47150 * 180.02562 * 28 27 26 45 45 H 1.08992 * 109.47536 * 300.01015 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3084 1.4432 1.0796 6 8 3.9015 1.4434 2.2248 7 7 5.6054 1.4435 0.7512 8 6 6.6490 1.4447 1.6782 9 6 6.3693 1.5805 3.0372 10 6 7.3833 1.5767 3.9496 11 6 8.7166 1.4473 3.5145 12 6 9.7722 1.4495 4.4520 13 1 10.7518 1.7995 4.1615 14 6 9.5493 0.9980 5.7575 15 7 8.4598 0.3315 6.0423 16 14 10.8071 1.3469 7.0938 17 1 11.9424 2.1114 6.5177 18 1 10.1725 2.1421 8.1755 19 1 11.3067 0.0639 7.6505 20 6 8.9915 1.3165 2.1393 21 6 7.9660 1.3155 1.2397 22 6 5.7798 1.4437 -0.5851 23 8 6.8325 1.4445 -1.1863 24 6 4.3856 1.4425 -1.1804 25 1 4.2245 0.5458 -1.7787 26 6 4.1587 2.7004 -2.0212 27 8 4.4559 3.8575 -1.2370 28 6 4.2760 5.0929 -1.9324 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 5.3468 1.6847 3.3687 37 1 7.1645 1.6775 5.0025 38 1 8.3052 0.0189 6.9474 39 1 10.0112 1.2165 1.7981 40 1 8.1751 1.2148 0.1850 41 1 4.8104 2.6762 -2.8945 42 1 3.1186 2.7383 -2.3449 43 1 3.2384 5.1806 -2.2546 44 1 4.5223 5.9222 -1.2694 45 1 4.9303 5.1180 -2.8037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771828624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:07 Heat of formation + Delta-G solvation = -73.556735 kcal Electronic energy + Delta-G solvation = -29156.962086 eV Core-core repulsion = 25140.056082 eV Total energy + Delta-G solvation = -4016.906004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.70297 -39.86389 -39.71220 -38.74250 -37.38753 -36.81578 -35.50772 -34.18615 -31.60469 -31.20683 -31.04039 -28.25373 -27.30217 -26.58085 -25.42828 -23.85819 -23.40804 -22.51872 -21.72112 -21.18761 -19.36807 -18.94599 -18.28704 -17.81498 -17.41481 -17.16843 -17.03707 -16.68007 -16.20496 -16.02186 -15.86958 -15.51679 -15.30215 -15.09545 -14.95857 -14.52348 -14.34209 -14.07767 -13.88137 -13.63302 -13.41756 -13.27021 -12.99642 -12.92716 -12.85175 -12.81210 -12.56434 -12.30844 -12.22514 -11.97243 -11.96593 -11.60767 -11.58710 -11.20243 -10.99910 -10.68714 -10.61426 -10.04885 -9.59218 -9.03651 -8.66094 -6.37259 0.48040 0.76700 1.03743 1.10276 1.38015 1.44312 1.54685 1.97131 2.10872 2.20175 2.65565 2.73421 2.92038 3.63048 3.67137 3.77807 4.01874 4.15233 4.24363 4.30054 4.35556 4.40720 4.43051 4.46227 4.50928 4.52522 4.60203 4.69968 4.74550 4.87082 4.94163 4.99406 5.08147 5.18341 5.23314 5.25286 5.35046 5.37209 5.53275 5.64536 5.73221 5.81366 6.01268 6.14461 6.23828 6.35542 6.41549 6.59528 6.85405 6.88426 7.11095 8.30518 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015772 B = 0.003276 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.901018 B = 8543.973173 C = 9557.148245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.149 3.851 4 N -0.602 5.602 5 C 0.691 3.309 6 O -0.574 6.574 7 N -0.502 5.502 8 C -0.016 4.016 9 C -0.115 4.115 10 C -0.170 4.170 11 C 0.082 3.918 12 C -0.488 4.488 13 H 0.084 0.916 14 C 0.030 3.970 15 N -0.826 5.826 16 Si 0.991 3.009 17 H -0.255 1.255 18 H -0.264 1.264 19 H -0.264 1.264 20 C -0.223 4.223 21 C -0.099 4.099 22 C 0.514 3.486 23 O -0.493 6.493 24 C 0.105 3.895 25 H 0.184 0.816 26 C 0.063 3.937 27 O -0.426 6.426 28 C 0.032 3.968 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.290 0.710 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 3.082 -17.662 23.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.030 3.970 4 N -0.341 5.341 5 C 0.395 3.605 6 O -0.451 6.451 7 N -0.237 5.237 8 C -0.107 4.107 9 C -0.134 4.134 10 C -0.190 4.190 11 C 0.079 3.921 12 C -0.517 4.517 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.811 3.189 17 H -0.178 1.178 18 H -0.189 1.189 19 H -0.189 1.189 20 C -0.243 4.243 21 C -0.119 4.119 22 C 0.304 3.696 23 O -0.366 6.366 24 C -0.001 4.001 25 H 0.201 0.799 26 C -0.014 4.014 27 O -0.346 6.346 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.110 0.890 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.701 2.954 -16.997 23.327 hybrid contribution 0.738 -0.021 0.971 1.219 sum -14.963 2.933 -16.026 22.121 Atomic orbital electron populations 1.21652 0.93045 1.02623 1.02801 1.21958 0.97714 0.96113 1.02273 1.21708 0.72141 0.98154 1.05020 1.47788 1.06839 1.75946 1.03479 1.16099 0.80680 0.77899 0.85867 1.90786 1.77298 1.56660 1.20388 1.43370 1.06866 1.64544 1.08872 1.17346 0.86166 1.19061 0.88094 1.21065 1.00215 1.00629 0.91539 1.20920 0.92744 1.06918 0.98392 1.18080 0.93405 0.88026 0.92540 1.19891 0.97562 1.38606 0.95660 0.89835 1.26906 0.98337 0.91584 1.01657 1.69901 1.26799 1.25823 1.22648 0.85030 0.78055 0.79167 0.76646 1.17814 1.18913 1.18889 1.20858 0.97854 1.12408 0.93212 1.20737 0.90482 1.00496 1.00171 1.21416 0.92684 0.74251 0.81231 1.90636 1.31885 1.47693 1.66421 1.22579 0.84240 1.03766 0.89527 0.79943 1.22878 1.03901 0.82080 0.92518 1.87973 1.90049 1.15502 1.41032 1.22872 1.01581 0.84571 0.97383 0.92048 0.93095 0.90177 0.89814 0.94610 0.90948 0.85458 0.85620 0.87557 0.89971 0.86990 0.84963 0.89020 0.86880 0.91326 0.90402 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.14 -2.17 6.26 30.60 0.19 -1.98 16 3 C 0.15 2.51 6.02 86.38 0.52 3.03 16 4 N -0.60 -15.24 2.65 -817.77 -2.16 -17.41 16 5 C 0.69 26.99 8.22 179.44 1.48 28.46 16 6 O -0.57 -26.68 14.29 -3.82 -0.05 -26.74 16 7 N -0.50 -21.32 2.81 -594.29 -1.67 -22.99 16 8 C -0.02 -0.82 6.57 38.47 0.25 -0.57 16 9 C -0.11 -6.38 9.18 22.13 0.20 -6.17 16 10 C -0.17 -9.94 8.61 22.48 0.19 -9.74 16 11 C 0.08 4.77 5.55 -21.28 -0.12 4.65 16 12 C -0.49 -27.35 9.04 23.40 0.21 -27.14 16 13 H 0.08 4.45 7.88 -2.91 -0.02 4.42 16 14 C 0.03 1.57 5.20 85.25 0.44 2.01 16 15 N -0.83 -45.37 10.95 21.82 0.24 -45.13 16 16 Si 0.99 39.35 29.58 68.60 2.03 41.38 16 17 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 18 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 20 C -0.22 -12.00 9.74 22.48 0.22 -11.79 16 21 C -0.10 -5.08 9.24 22.12 0.20 -4.88 16 22 C 0.51 17.89 7.03 87.94 0.62 18.51 16 23 O -0.49 -19.11 15.02 -2.87 -0.04 -19.15 16 24 C 0.11 2.20 3.86 44.37 0.17 2.37 16 25 H 0.18 2.15 8.14 -2.39 -0.02 2.13 16 26 C 0.06 0.96 5.70 71.98 0.41 1.37 16 27 O -0.43 -10.13 10.10 -148.98 -1.51 -11.63 16 28 C 0.03 0.49 11.01 113.37 1.25 1.74 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.51 8.03 -2.39 -0.02 1.50 16 35 H 0.13 1.01 7.34 -2.39 -0.02 0.99 16 36 H 0.13 7.03 5.14 -2.91 -0.01 7.01 16 37 H 0.11 6.43 6.27 -2.91 -0.02 6.41 16 38 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 39 H 0.11 5.56 8.06 -2.91 -0.02 5.54 16 40 H 0.13 6.38 5.32 -2.91 -0.02 6.36 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 42 H 0.11 0.73 7.41 -2.39 -0.02 0.72 16 43 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -79.33 373.03 4.80 -74.54 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 1.01 Total: 28.08 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.96 Total: -0.96 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.60 Total: -85.53 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -1.60 Total: -57.52 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -79.33 4.80 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.982 kcal (2) G-P(sol) polarization free energy of solvation -79.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds