Wall clock time and date at job start Tue Mar 31 2020 17:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46745 * 2 1 4 4 N 1.46495 * 109.46723 * 179.97438 * 3 2 1 5 5 C 1.34529 * 126.69265 * 89.98045 * 4 3 2 6 6 O 1.21532 * 123.76655 * 0.02631 * 5 4 3 7 7 N 1.33784 * 112.46183 * 180.02562 * 5 4 3 8 8 C 1.39598 * 124.18018 * 180.02562 * 7 5 4 9 9 C 1.39405 * 119.82489 * 353.50737 * 8 7 5 10 10 C 1.36404 * 120.17437 * 179.76518 * 9 8 7 11 11 C 1.40853 * 119.81984 * 0.48431 * 10 9 8 12 12 C 1.41178 * 120.16805 * 179.74294 * 11 10 9 13 13 H 1.08003 * 120.00355 * 205.27287 * 12 11 10 14 14 C 1.39913 * 120.00054 * 25.28311 * 12 11 10 15 15 N 1.30864 * 120.00213 * 17.34718 * 14 12 11 16 16 Si 1.86807 * 119.99985 * 197.35436 * 14 12 11 17 17 H 1.48496 * 109.47036 * 84.94954 * 16 14 12 18 18 H 1.48501 * 109.46797 * 204.95058 * 16 14 12 19 19 H 1.48495 * 109.47151 * 324.94816 * 16 14 12 20 20 C 1.40844 * 119.65993 * 359.77019 * 11 10 9 21 21 C 1.36410 * 119.82132 * 359.97438 * 20 11 10 22 22 C 1.34770 * 111.64346 * 359.97438 * 7 5 4 23 23 O 1.21231 * 127.15817 * 179.97438 * 22 7 5 24 24 C 1.47313 * 126.69213 * 270.29128 * 4 3 2 25 25 H 1.09003 * 110.69813 * 61.50888 * 24 4 3 26 26 C 1.52998 * 110.50078 * 298.56274 * 24 4 3 27 27 O 1.42902 * 109.47049 * 299.43101 * 26 24 4 28 28 C 1.42896 * 114.00160 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 299.99603 * 1 2 3 31 31 H 1.09001 * 109.47637 * 60.00442 * 1 2 3 32 32 H 1.08993 * 109.47307 * 240.00029 * 2 1 3 33 33 H 1.08999 * 109.46898 * 119.99591 * 2 1 3 34 34 H 1.09000 * 109.46809 * 59.99988 * 3 2 1 35 35 H 1.08993 * 109.46943 * 299.99888 * 3 2 1 36 36 H 1.07996 * 119.90918 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.09133 * 180.25780 * 10 9 8 38 38 H 0.97006 * 120.00109 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.09154 * 180.02562 * 20 11 10 40 40 H 1.08008 * 119.91000 * 180.02562 * 21 20 11 41 41 H 1.09001 * 109.47258 * 59.42755 * 26 24 4 42 42 H 1.09000 * 109.47179 * 179.42866 * 26 24 4 43 43 H 1.09007 * 109.47341 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.47093 * 299.99090 * 28 27 26 45 45 H 1.08996 * 109.47678 * 59.99765 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5048 1.4426 0.0006 5 6 4.3091 1.4421 -1.0778 6 8 3.9031 1.4420 -2.2233 7 7 5.6058 1.4417 -0.7483 8 6 6.6503 1.4416 -1.6745 9 6 6.3717 1.3052 -3.0336 10 6 7.3864 1.3090 -3.9452 11 6 8.7193 1.4410 -3.5092 12 6 9.7756 1.4404 -4.4458 13 1 10.7661 1.1351 -4.1425 14 6 9.5392 1.8355 -5.7670 15 7 8.4619 2.5166 -6.0636 16 14 10.7615 1.3906 -7.1078 17 1 10.4673 0.0254 -7.6126 18 1 10.6498 2.3653 -8.2226 19 1 12.1388 1.4276 -6.5542 20 6 8.9928 1.5730 -2.1338 21 6 7.9667 1.5726 -1.2350 22 6 5.7791 1.4425 0.5882 23 8 6.8314 1.4419 1.1901 24 6 4.3846 1.4368 1.1822 25 1 4.2245 0.5376 1.7773 26 6 4.1550 2.6913 2.0274 27 8 4.4509 3.8517 1.2477 28 6 4.2685 5.0842 1.9474 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 5.3496 1.1996 -3.3659 37 1 7.1688 1.2074 -4.9982 38 1 8.2978 2.7903 -6.9797 39 1 10.0121 1.6750 -1.7918 40 1 8.1748 1.6741 -0.1801 41 1 3.1145 2.7264 2.3505 42 1 4.8060 2.6649 2.9012 43 1 4.5139 5.9164 1.2875 44 1 3.2305 5.1692 2.2690 45 1 4.9222 5.1073 2.8192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771828625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:13 Heat of formation + Delta-G solvation = -53.166430 kcal Electronic energy + Delta-G solvation = -29166.272563 eV Core-core repulsion = 25150.250749 eV Total energy + Delta-G solvation = -4016.021814 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.28342 -38.40021 -38.26692 -37.35995 -36.11546 -35.33610 -33.95228 -32.84169 -30.18490 -29.58855 -29.26591 -27.06223 -26.41940 -25.06912 -24.13256 -22.55811 -21.87666 -21.20471 -20.11111 -19.71639 -17.62983 -17.30501 -16.97956 -16.52534 -16.26150 -16.02101 -15.52507 -15.28888 -15.13907 -14.80733 -14.67519 -14.10935 -14.01872 -13.76926 -13.33138 -13.08740 -12.85797 -12.63438 -12.51631 -12.28881 -12.23901 -12.02925 -11.89584 -11.62330 -11.55273 -11.51961 -11.20077 -11.08483 -10.91440 -10.71520 -10.35587 -10.12931 -9.93991 -9.82335 -9.40491 -9.11205 -8.92463 -8.79507 -7.50994 -7.08308 -6.75366 -4.30988 1.92544 2.38431 2.63178 3.07474 3.09824 3.11804 3.15315 3.21536 3.47295 3.70769 3.93627 4.12333 4.52989 4.63852 4.67743 4.77069 4.92007 4.97843 5.00428 5.08085 5.11874 5.17882 5.23584 5.41558 5.54077 5.54977 5.66813 5.73188 5.81386 5.99217 6.05848 6.20511 6.37460 6.49800 6.68290 6.86692 6.94471 7.05151 7.16804 7.26155 7.58377 7.65325 7.73490 7.94321 8.06657 8.16500 8.28777 8.58748 8.63871 8.88271 8.98446 10.17601 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003271 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.143804 B = 8557.588425 C = 9465.811265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.155 3.845 4 N -0.622 5.622 5 C 0.703 3.297 6 O -0.531 6.531 7 N -0.481 5.481 8 C -0.026 4.026 9 C -0.103 4.103 10 C -0.157 4.157 11 C 0.110 3.890 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.786 5.786 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.262 1.262 20 C -0.217 4.217 21 C -0.093 4.093 22 C 0.524 3.476 23 O -0.471 6.471 24 C 0.093 3.907 25 H 0.134 0.866 26 C 0.065 3.935 27 O -0.380 6.380 28 C 0.035 3.965 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.282 0.718 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -0.397 14.834 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.034 3.966 4 N -0.362 5.362 5 C 0.406 3.594 6 O -0.405 6.405 7 N -0.215 5.215 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.177 4.177 11 C 0.107 3.893 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.410 5.410 16 Si 0.735 3.265 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.186 1.186 20 C -0.237 4.237 21 C -0.113 4.113 22 C 0.311 3.689 23 O -0.342 6.342 24 C -0.015 4.015 25 H 0.152 0.848 26 C -0.013 4.013 27 O -0.299 6.299 28 C -0.062 4.062 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.059 0.941 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.135 -0.261 14.080 19.953 hybrid contribution 0.392 0.015 -0.281 0.483 sum -13.742 -0.246 13.799 19.477 Atomic orbital electron populations 1.21676 0.94848 1.02083 1.01971 1.22001 0.96258 0.97206 1.03063 1.21297 0.74762 0.96989 1.03536 1.47599 1.05759 1.78093 1.04735 1.15811 0.80692 0.77808 0.85076 1.90832 1.76874 1.54513 1.18266 1.43169 1.06858 1.63443 1.08032 1.17254 0.84737 1.21802 0.87725 1.20997 1.00644 1.00036 0.90542 1.20974 0.91992 1.05822 0.98865 1.17764 0.93074 0.86986 0.91450 1.19605 0.96796 1.38626 0.93394 0.90200 1.25969 0.96032 0.92469 0.99985 1.69852 1.25063 1.24902 1.21218 0.86287 0.81225 0.79298 0.79689 1.19129 1.20309 1.18630 1.20599 0.96808 1.12861 0.93438 1.20573 0.90546 1.00383 0.99762 1.20341 0.90305 0.75962 0.82301 1.90668 1.30199 1.47043 1.66321 1.22198 0.89170 0.99974 0.90126 0.84832 1.22607 1.00714 0.84570 0.93447 1.88028 1.89299 1.13627 1.38931 1.22749 0.99594 0.86296 0.97529 0.92356 0.92666 0.92301 0.91024 0.91746 0.90210 0.89273 0.85250 0.85979 0.90672 0.88307 0.86217 0.91546 0.90796 0.89348 0.94080 0.93839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.15 -1.29 6.26 -26.73 -0.17 -1.46 16 3 C 0.16 1.56 6.01 -4.04 -0.02 1.53 16 4 N -0.62 -8.60 2.64 -172.41 -0.46 -9.06 16 5 C 0.70 13.62 8.22 -88.02 -0.72 12.90 16 6 O -0.53 -11.82 14.29 5.34 0.08 -11.74 16 7 N -0.48 -10.12 2.81 -64.21 -0.18 -10.30 16 8 C -0.03 -0.64 6.57 -83.45 -0.55 -1.19 16 9 C -0.10 -2.69 9.18 -39.81 -0.37 -3.05 16 10 C -0.16 -4.31 8.64 -39.25 -0.34 -4.65 16 11 C 0.11 3.04 5.57 -106.81 -0.59 2.45 16 12 C -0.46 -12.28 9.04 -37.84 -0.34 -12.62 16 13 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16 14 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 15 N -0.79 -20.76 10.97 55.55 0.61 -20.15 16 16 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.22 -5.63 9.74 -39.26 -0.38 -6.01 16 21 C -0.09 -2.32 9.24 -39.81 -0.37 -2.69 16 22 C 0.52 9.45 7.03 -10.56 -0.07 9.38 16 23 O -0.47 -9.35 15.02 5.60 0.08 -9.27 16 24 C 0.09 1.15 3.87 -68.21 -0.26 0.89 16 25 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 26 C 0.06 0.66 5.70 37.16 0.21 0.87 16 27 O -0.38 -5.15 10.10 -35.23 -0.36 -5.51 16 28 C 0.03 0.33 11.01 101.05 1.11 1.44 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.56 7.33 -51.93 -0.38 0.18 16 35 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 36 H 0.13 3.37 5.15 -52.49 -0.27 3.10 16 37 H 0.12 3.43 6.19 -52.49 -0.32 3.11 16 38 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 39 H 0.10 2.39 8.06 -52.49 -0.42 1.97 16 40 H 0.12 2.87 5.32 -52.48 -0.28 2.59 16 41 H 0.07 0.46 7.40 -51.93 -0.38 0.08 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -33.20 372.97 -8.48 -41.68 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.26 Total: 5.94 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.59 Total: -1.06 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.03 Total: -39.51 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.20 Total: -26.52 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.20 -8.48 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.487 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds