Wall clock time and date at job start Tue Mar 31 2020 17:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46745 * 2 1 4 4 N 1.46495 * 109.46723 * 179.97438 * 3 2 1 5 5 C 1.34529 * 126.69265 * 89.98045 * 4 3 2 6 6 O 1.21532 * 123.76655 * 0.02631 * 5 4 3 7 7 N 1.33784 * 112.46183 * 180.02562 * 5 4 3 8 8 C 1.39598 * 124.18018 * 180.02562 * 7 5 4 9 9 C 1.39405 * 119.82489 * 353.50737 * 8 7 5 10 10 C 1.36404 * 120.17437 * 179.76518 * 9 8 7 11 11 C 1.40853 * 119.81984 * 0.48431 * 10 9 8 12 12 C 1.41178 * 120.16805 * 179.74294 * 11 10 9 13 13 H 1.08003 * 120.00355 * 205.27287 * 12 11 10 14 14 C 1.39913 * 120.00054 * 25.28311 * 12 11 10 15 15 N 1.30864 * 120.00213 * 17.34718 * 14 12 11 16 16 Si 1.86807 * 119.99985 * 197.35436 * 14 12 11 17 17 H 1.48496 * 109.47036 * 84.94954 * 16 14 12 18 18 H 1.48501 * 109.46797 * 204.95058 * 16 14 12 19 19 H 1.48495 * 109.47151 * 324.94816 * 16 14 12 20 20 C 1.40844 * 119.65993 * 359.77019 * 11 10 9 21 21 C 1.36410 * 119.82132 * 359.97438 * 20 11 10 22 22 C 1.34770 * 111.64346 * 359.97438 * 7 5 4 23 23 O 1.21231 * 127.15817 * 179.97438 * 22 7 5 24 24 C 1.47313 * 126.69213 * 270.29128 * 4 3 2 25 25 H 1.09003 * 110.69813 * 61.50888 * 24 4 3 26 26 C 1.52998 * 110.50078 * 298.56274 * 24 4 3 27 27 O 1.42902 * 109.47049 * 299.43101 * 26 24 4 28 28 C 1.42896 * 114.00160 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47477 * 299.99603 * 1 2 3 31 31 H 1.09001 * 109.47637 * 60.00442 * 1 2 3 32 32 H 1.08993 * 109.47307 * 240.00029 * 2 1 3 33 33 H 1.08999 * 109.46898 * 119.99591 * 2 1 3 34 34 H 1.09000 * 109.46809 * 59.99988 * 3 2 1 35 35 H 1.08993 * 109.46943 * 299.99888 * 3 2 1 36 36 H 1.07996 * 119.90918 * 359.97438 * 9 8 7 37 37 H 1.08002 * 120.09133 * 180.25780 * 10 9 8 38 38 H 0.97006 * 120.00109 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.09154 * 180.02562 * 20 11 10 40 40 H 1.08008 * 119.91000 * 180.02562 * 21 20 11 41 41 H 1.09001 * 109.47258 * 59.42755 * 26 24 4 42 42 H 1.09000 * 109.47179 * 179.42866 * 26 24 4 43 43 H 1.09007 * 109.47341 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.47093 * 299.99090 * 28 27 26 45 45 H 1.08996 * 109.47678 * 59.99765 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5048 1.4426 0.0006 5 6 4.3091 1.4421 -1.0778 6 8 3.9031 1.4420 -2.2233 7 7 5.6058 1.4417 -0.7483 8 6 6.6503 1.4416 -1.6745 9 6 6.3717 1.3052 -3.0336 10 6 7.3864 1.3090 -3.9452 11 6 8.7193 1.4410 -3.5092 12 6 9.7756 1.4404 -4.4458 13 1 10.7661 1.1351 -4.1425 14 6 9.5392 1.8355 -5.7670 15 7 8.4619 2.5166 -6.0636 16 14 10.7615 1.3906 -7.1078 17 1 10.4673 0.0254 -7.6126 18 1 10.6498 2.3653 -8.2226 19 1 12.1388 1.4276 -6.5542 20 6 8.9928 1.5730 -2.1338 21 6 7.9667 1.5726 -1.2350 22 6 5.7791 1.4425 0.5882 23 8 6.8314 1.4419 1.1901 24 6 4.3846 1.4368 1.1822 25 1 4.2245 0.5376 1.7773 26 6 4.1550 2.6913 2.0274 27 8 4.4509 3.8517 1.2477 28 6 4.2685 5.0842 1.9474 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8899 36 1 5.3496 1.1996 -3.3659 37 1 7.1688 1.2074 -4.9982 38 1 8.2978 2.7903 -6.9797 39 1 10.0121 1.6750 -1.7918 40 1 8.1748 1.6741 -0.1801 41 1 3.1145 2.7264 2.3505 42 1 4.8060 2.6649 2.9012 43 1 4.5139 5.9164 1.2875 44 1 3.2305 5.1692 2.2690 45 1 4.9222 5.1073 2.8192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771828625.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:12 Heat of formation + Delta-G solvation = -73.606097 kcal Electronic energy + Delta-G solvation = -29167.158893 eV Core-core repulsion = 25150.250749 eV Total energy + Delta-G solvation = -4016.908144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.69743 -39.85852 -39.70857 -38.74632 -37.38684 -36.81438 -35.52499 -34.18795 -31.59936 -31.21072 -31.04151 -28.25748 -27.30759 -26.57975 -25.42402 -23.86352 -23.41238 -22.50116 -21.71215 -21.18767 -19.37723 -18.94049 -18.29901 -17.80018 -17.42373 -17.15858 -17.04249 -16.68390 -16.20745 -16.05726 -15.83455 -15.51519 -15.30121 -15.09383 -14.95689 -14.56085 -14.31746 -14.07598 -13.82034 -13.69893 -13.40843 -13.27357 -12.96121 -12.93921 -12.84833 -12.83113 -12.56213 -12.31484 -12.22123 -11.98802 -11.95371 -11.63901 -11.56232 -11.20489 -10.98000 -10.69382 -10.60506 -10.04747 -9.58954 -9.06982 -8.68884 -6.36354 0.48411 0.77612 1.04418 1.10806 1.37541 1.46616 1.52269 1.98136 2.10391 2.19375 2.65599 2.71683 2.92493 3.64772 3.65435 3.78874 4.02037 4.15465 4.24330 4.30167 4.35407 4.41233 4.43170 4.46347 4.51282 4.52419 4.59629 4.70239 4.74807 4.86362 4.94630 4.99482 5.07672 5.18518 5.23520 5.25210 5.35216 5.37478 5.53341 5.64543 5.73862 5.81890 6.00589 6.14256 6.23682 6.36421 6.42032 6.58933 6.84275 6.88466 7.11643 8.27176 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.003271 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.143804 B = 8557.588425 C = 9465.811265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.148 3.852 4 N -0.602 5.602 5 C 0.691 3.309 6 O -0.574 6.574 7 N -0.501 5.501 8 C -0.021 4.021 9 C -0.113 4.113 10 C -0.175 4.175 11 C 0.083 3.917 12 C -0.487 4.487 13 H 0.085 0.915 14 C 0.032 3.968 15 N -0.820 5.820 16 Si 0.991 3.009 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.254 1.254 20 C -0.227 4.227 21 C -0.097 4.097 22 C 0.514 3.486 23 O -0.494 6.494 24 C 0.105 3.895 25 H 0.185 0.815 26 C 0.063 3.937 27 O -0.426 6.426 28 C 0.032 3.968 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 -0.523 17.469 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C 0.029 3.971 4 N -0.341 5.341 5 C 0.394 3.606 6 O -0.452 6.452 7 N -0.236 5.236 8 C -0.112 4.112 9 C -0.133 4.133 10 C -0.195 4.195 11 C 0.080 3.920 12 C -0.516 4.516 13 H 0.103 0.897 14 C -0.184 4.184 15 N -0.445 5.445 16 Si 0.811 3.189 17 H -0.185 1.185 18 H -0.191 1.191 19 H -0.178 1.178 20 C -0.247 4.247 21 C -0.116 4.116 22 C 0.304 3.696 23 O -0.367 6.367 24 C -0.001 4.001 25 H 0.202 0.798 26 C -0.014 4.014 27 O -0.346 6.346 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.669 -0.381 16.800 22.976 hybrid contribution 0.730 0.088 -0.951 1.202 sum -14.938 -0.293 15.849 21.781 Atomic orbital electron populations 1.21653 0.93087 1.02639 1.02766 1.21952 0.97672 0.96017 1.02343 1.21708 0.72155 0.98239 1.04958 1.47785 1.06826 1.75958 1.03482 1.16099 0.80689 0.77904 0.85866 1.90784 1.77342 1.56687 1.20354 1.43366 1.06857 1.64505 1.08872 1.17322 0.86108 1.19591 0.88130 1.21053 1.00181 1.00518 0.91507 1.20917 0.92728 1.07443 0.98428 1.18066 0.93401 0.88007 0.92534 1.19885 0.96898 1.40091 0.94709 0.89728 1.26931 0.98069 0.91468 1.01934 1.69913 1.26914 1.25402 1.22306 0.85091 0.78493 0.79137 0.76226 1.18545 1.19139 1.17782 1.20816 0.97809 1.12903 0.93191 1.20725 0.90546 1.00241 1.00123 1.21415 0.92679 0.74283 0.81236 1.90635 1.31944 1.47738 1.66380 1.22579 0.84255 1.03767 0.89480 0.79829 1.22889 1.03902 0.82078 0.92577 1.87976 1.90034 1.15509 1.41101 1.22869 1.01593 0.84650 0.97292 0.91980 0.90237 0.93140 0.94477 0.89760 0.85551 0.91027 0.85606 0.87503 0.89830 0.87089 0.85096 0.86882 0.89014 0.90521 0.91283 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.14 -2.12 6.26 30.60 0.19 -1.93 16 3 C 0.15 2.52 6.01 86.38 0.52 3.04 16 4 N -0.60 -15.31 2.64 -817.80 -2.16 -17.47 16 5 C 0.69 27.07 8.22 179.44 1.48 28.55 16 6 O -0.57 -26.76 14.29 -3.81 -0.05 -26.81 16 7 N -0.50 -21.38 2.81 -594.30 -1.67 -23.05 16 8 C -0.02 -1.07 6.57 38.47 0.25 -0.82 16 9 C -0.11 -6.27 9.18 22.12 0.20 -6.07 16 10 C -0.18 -10.25 8.64 22.48 0.19 -10.06 16 11 C 0.08 4.80 5.57 -21.28 -0.12 4.68 16 12 C -0.49 -27.24 9.04 23.40 0.21 -27.03 16 13 H 0.08 4.48 7.90 -2.91 -0.02 4.45 16 14 C 0.03 1.65 5.14 85.24 0.44 2.09 16 15 N -0.82 -44.94 10.97 21.82 0.24 -44.70 16 16 Si 0.99 39.10 29.59 68.60 2.03 41.13 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 C -0.23 -12.26 9.74 22.48 0.22 -12.04 16 21 C -0.10 -4.98 9.24 22.12 0.20 -4.78 16 22 C 0.51 17.97 7.03 87.94 0.62 18.58 16 23 O -0.49 -19.22 15.02 -2.88 -0.04 -19.27 16 24 C 0.11 2.22 3.87 44.37 0.17 2.39 16 25 H 0.19 2.14 8.14 -2.39 -0.02 2.12 16 26 C 0.06 0.97 5.70 71.98 0.41 1.38 16 27 O -0.43 -10.45 10.10 -148.98 -1.50 -11.95 16 28 C 0.03 0.52 11.01 113.37 1.25 1.77 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.13 1.04 7.33 -2.39 -0.02 1.02 16 35 H 0.07 1.52 8.03 -2.39 -0.02 1.50 16 36 H 0.13 7.02 5.15 -2.91 -0.01 7.01 16 37 H 0.11 6.44 6.19 -2.91 -0.02 6.42 16 38 H 0.29 14.35 8.30 -92.70 -0.77 13.58 16 39 H 0.11 5.54 8.06 -2.91 -0.02 5.51 16 40 H 0.13 6.38 5.32 -2.91 -0.02 6.37 16 41 H 0.11 0.77 7.40 -2.39 -0.02 0.75 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -79.36 372.97 4.80 -74.56 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 1.01 Total: 28.61 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.95 Total: -1.05 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.59 Total: -85.21 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.60 Total: -58.03 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -79.36 4.80 -74.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771828625.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.953 kcal (2) G-P(sol) polarization free energy of solvation -79.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds