Wall clock time and date at job start Tue Mar 31 2020 17:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 120.00141 * 2 1 4 4 N 1.46499 * 109.46870 * 124.99889 * 3 2 1 5 5 C 1.34778 * 119.99594 * 82.01269 * 4 3 2 6 6 O 1.21358 * 120.00103 * 181.45325 * 5 4 3 7 7 C 1.49355 * 120.00322 * 1.44621 * 5 4 3 8 8 O 1.21376 * 120.00066 * 354.44252 * 7 5 4 9 9 N 1.34780 * 120.00033 * 174.44333 * 7 5 4 10 10 C 1.39721 * 119.99529 * 173.76227 * 9 7 5 11 11 C 1.39018 * 120.04599 * 323.63803 * 10 9 7 12 12 C 1.38136 * 120.06467 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.14565 * 359.72272 * 12 11 10 14 14 C 1.38923 * 120.07860 * 0.55477 * 13 12 11 15 15 O 1.35743 * 120.03201 * 179.71576 * 14 13 12 16 16 C 1.34832 * 117.00411 * 177.87173 * 15 14 13 17 17 H 1.08005 * 119.99256 * 4.43377 * 16 15 14 18 18 C 1.38648 * 120.00310 * 184.43109 * 16 15 14 19 19 N 1.31555 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47153 * 60.00451 * 20 18 16 22 22 H 1.48509 * 109.46751 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46948 * 299.99975 * 20 18 16 24 24 C 1.38763 * 119.93645 * 359.44609 * 14 13 12 25 25 C 1.46497 * 120.00441 * 262.00557 * 4 3 2 26 26 C 1.52999 * 109.46954 * 301.99183 * 25 4 3 27 27 C 1.53004 * 109.46795 * 61.99047 * 25 4 3 28 28 H 1.07999 * 119.99576 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00184 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00293 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46852 * 5.00080 * 3 2 1 32 32 H 1.08997 * 109.46870 * 245.00024 * 3 2 1 33 33 H 0.96999 * 119.99807 * 353.76493 * 9 7 5 34 34 H 1.08008 * 119.96866 * 0.02562 * 11 10 9 35 35 H 1.07998 * 119.93312 * 180.02562 * 12 11 10 36 36 H 1.07994 * 119.96394 * 180.27806 * 13 12 11 37 37 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.07113 * 180.24800 * 24 14 13 39 39 H 1.08994 * 109.47189 * 181.98875 * 25 4 3 40 40 H 1.09001 * 109.47316 * 59.99481 * 26 25 4 41 41 H 1.09004 * 109.46881 * 180.02562 * 26 25 4 42 42 H 1.09000 * 109.47533 * 299.99364 * 26 25 4 43 43 H 1.08994 * 109.47515 * 59.99707 * 27 25 4 44 44 H 1.09000 * 109.47102 * 180.02562 * 27 25 4 45 45 H 1.09008 * 109.47058 * 299.99779 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.1920 0.7228 1.0331 6 8 4.9519 0.7222 1.9794 7 6 4.5848 0.0483 -0.2403 8 8 3.7877 -0.0394 -1.1514 9 7 5.8242 -0.4629 -0.3777 10 6 6.1510 -1.2067 -1.5144 11 6 5.2061 -2.0473 -2.0916 12 6 5.5289 -2.7831 -3.2152 13 6 6.7894 -2.6821 -3.7724 14 6 7.7402 -1.8484 -3.1972 15 8 8.9799 -1.7542 -3.7419 16 6 9.8403 -0.8941 -3.1607 17 1 9.5553 -0.3717 -2.2594 18 6 11.0908 -0.6801 -3.7201 19 7 11.4377 -1.3161 -4.8183 20 14 12.2830 0.5111 -2.9144 21 1 12.5813 0.0546 -1.5331 22 1 13.5409 0.5612 -3.7022 23 1 11.6744 1.8648 -2.8678 24 6 7.4195 -1.1076 -2.0685 25 6 2.6217 2.0207 2.3696 26 6 2.3110 3.4873 2.0637 27 6 1.3846 1.3524 2.9730 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 6.4893 -0.3146 0.3127 34 1 4.2186 -2.1250 -1.6612 35 1 4.7931 -3.4352 -3.6621 36 1 7.0372 -3.2554 -4.6535 37 1 12.3124 -1.1661 -5.2098 38 1 8.1557 -0.4557 -1.6219 39 1 3.4474 1.9645 3.0789 40 1 1.4853 3.5435 1.3543 41 1 2.0346 4.0000 2.9851 42 1 3.1923 3.9635 1.6339 43 1 1.6059 0.3077 3.1909 44 1 1.1075 1.8652 3.8941 45 1 0.5589 1.4087 2.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783394113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:08 Heat of formation + Delta-G solvation = -29.930179 kcal Electronic energy + Delta-G solvation = -28294.715830 eV Core-core repulsion = 24279.701616 eV Total energy + Delta-G solvation = -4015.014215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20366 -39.53981 -38.48516 -37.36360 -36.50474 -34.41041 -34.08603 -32.27582 -31.97422 -29.56533 -28.73341 -27.60731 -26.58445 -25.59051 -25.05269 -22.23905 -21.88478 -20.75607 -20.41104 -19.41376 -18.23693 -18.03583 -17.35508 -17.17017 -16.11129 -15.91606 -15.49052 -15.11716 -14.87145 -14.62007 -14.49576 -14.23756 -14.11216 -13.93822 -13.63441 -13.55880 -13.27015 -13.05561 -12.68761 -12.55694 -12.45907 -12.29284 -11.85806 -11.74028 -11.67784 -11.54391 -11.38243 -11.11572 -11.07057 -10.98393 -10.84478 -10.49419 -9.89743 -9.69543 -9.53588 -9.28632 -9.05881 -8.83915 -7.84815 -7.24477 -6.48073 -4.08027 1.19595 1.87260 2.10682 2.31049 2.38696 3.11379 3.12182 3.15493 3.17388 3.42135 3.94098 4.23755 4.49751 4.53122 4.62888 4.74703 4.86066 4.87961 5.05835 5.16906 5.21337 5.22414 5.28283 5.41940 5.52398 5.56720 5.61781 5.71804 5.81091 5.87041 5.88339 5.98326 6.06933 6.13925 6.18119 6.42872 6.52925 6.55371 6.72542 6.86045 6.89238 7.04708 7.21394 7.34793 7.39654 7.65416 7.70693 7.95242 8.02488 8.97158 9.65417 10.69582 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002830 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.623723 B = 9891.764412 C =11210.641564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.123 3.877 4 N -0.576 5.576 5 C 0.510 3.490 6 O -0.520 6.520 7 C 0.502 3.498 8 O -0.492 6.492 9 N -0.637 5.637 10 C 0.175 3.825 11 C -0.202 4.202 12 C -0.062 4.062 13 C -0.195 4.195 14 C 0.168 3.832 15 O -0.173 6.173 16 C -0.395 4.395 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.250 4.250 25 C 0.127 3.873 26 C -0.162 4.162 27 C -0.160 4.160 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.417 0.583 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.271 0.729 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.706 6.326 12.841 24.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.163 4.163 3 C 0.001 3.999 4 N -0.309 5.309 5 C 0.293 3.707 6 O -0.396 6.396 7 C 0.284 3.716 8 O -0.367 6.367 9 N -0.283 5.283 10 C 0.082 3.918 11 C -0.223 4.223 12 C -0.081 4.081 13 C -0.215 4.215 14 C 0.113 3.887 15 O -0.076 6.076 16 C -0.471 4.471 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.496 5.496 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.271 4.271 25 C 0.025 3.975 26 C -0.220 4.220 27 C -0.218 4.218 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.255 0.745 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.554 6.170 12.390 23.957 hybrid contribution 0.857 0.671 0.737 1.314 sum -18.698 6.840 13.126 23.847 Atomic orbital electron populations 1.23770 0.95652 1.01724 1.01947 1.23203 0.95793 0.98877 0.98396 1.21194 0.92669 0.95677 0.90318 1.47905 1.15318 1.52022 1.15651 1.20175 0.82329 0.79823 0.88381 1.90757 1.51054 1.58640 1.39178 1.20046 0.83203 0.80404 0.87961 1.90745 1.49805 1.55392 1.40714 1.43167 1.12800 1.50494 1.21846 1.17361 0.94367 0.92504 0.87536 1.20441 0.99379 1.01651 1.00799 1.20504 0.95172 0.97639 0.94805 1.20282 0.93041 1.04674 1.03491 1.19060 0.86363 0.92559 0.90708 1.84008 1.16755 1.55813 1.51005 1.21252 0.94554 1.21555 1.09705 0.89169 1.25275 0.97103 0.97949 0.96011 1.70024 1.21289 1.39757 1.18483 0.85797 0.79043 0.79786 0.78926 1.19430 1.20224 1.19494 1.20857 0.97005 1.08279 1.00963 1.21232 0.98928 0.91574 0.85765 1.22167 1.02374 0.94925 1.02553 1.22166 0.97384 1.01246 1.01027 0.88741 0.88423 0.87220 0.90099 0.86376 0.74541 0.86666 0.86463 0.86222 0.91892 0.85020 0.87814 0.92016 0.90996 0.91954 0.92161 0.91347 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.54 13.64 29.01 0.40 -1.15 16 2 C -0.14 -1.42 8.06 -36.02 -0.29 -1.71 16 3 C 0.12 1.19 4.69 -5.19 -0.02 1.17 16 4 N -0.58 -6.13 2.38 -168.01 -0.40 -6.53 16 5 C 0.51 6.85 7.66 -11.63 -0.09 6.76 16 6 O -0.52 -7.88 15.84 5.49 0.09 -7.79 16 7 C 0.50 7.49 7.43 -11.63 -0.09 7.40 16 8 O -0.49 -7.73 9.82 5.47 0.05 -7.68 16 9 N -0.64 -10.13 5.30 -10.31 -0.05 -10.19 16 10 C 0.17 3.28 6.21 -83.77 -0.52 2.76 16 11 C -0.20 -3.67 8.65 -39.33 -0.34 -4.01 16 12 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.20 -4.06 9.99 -39.35 -0.39 -4.45 16 14 C 0.17 3.99 6.65 -39.13 -0.26 3.73 16 15 O -0.17 -4.84 9.76 0.06 0.00 -4.84 16 16 C -0.39 -10.85 9.48 30.88 0.29 -10.56 16 17 H 0.09 2.28 5.19 -52.48 -0.27 2.01 16 18 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 19 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 20 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.25 -5.34 9.09 -39.19 -0.36 -5.70 16 25 C 0.13 1.10 3.24 -67.93 -0.22 0.88 16 26 C -0.16 -1.08 9.15 37.16 0.34 -0.74 16 27 C -0.16 -1.13 8.89 37.16 0.33 -0.80 16 28 H 0.09 0.62 7.84 -52.49 -0.41 0.20 16 29 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.11 1.28 7.48 -52.49 -0.39 0.89 16 31 H 0.08 0.60 6.00 -51.93 -0.31 0.29 16 32 H 0.12 1.37 5.65 -51.93 -0.29 1.08 16 33 H 0.42 6.02 8.33 -40.82 -0.34 5.68 16 34 H 0.12 1.97 6.67 -52.48 -0.35 1.62 16 35 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.13 2.80 5.61 -52.49 -0.29 2.50 16 39 H 0.10 1.03 6.90 -51.93 -0.36 0.68 16 40 H 0.06 0.36 6.60 -51.93 -0.34 0.02 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.42 6.74 -51.92 -0.35 0.07 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -31.20 374.05 -6.47 -37.67 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.81 Total: 9.57 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.71 Total: -6.92 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.30 Total: -40.93 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.14 Total: -20.32 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.20 -6.47 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783394113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.740 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds