Wall clock time and date at job start Tue Mar 31 2020 17:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50708 * 120.00141 * 2 1 4 4 N 1.46499 * 109.46870 * 124.99889 * 3 2 1 5 5 C 1.34778 * 119.99594 * 82.01269 * 4 3 2 6 6 O 1.21358 * 120.00103 * 181.45325 * 5 4 3 7 7 C 1.49355 * 120.00322 * 1.44621 * 5 4 3 8 8 O 1.21376 * 120.00066 * 354.44252 * 7 5 4 9 9 N 1.34780 * 120.00033 * 174.44333 * 7 5 4 10 10 C 1.39721 * 119.99529 * 173.76227 * 9 7 5 11 11 C 1.39018 * 120.04599 * 323.63803 * 10 9 7 12 12 C 1.38136 * 120.06467 * 180.02562 * 11 10 9 13 13 C 1.38185 * 120.14565 * 359.72272 * 12 11 10 14 14 C 1.38923 * 120.07860 * 0.55477 * 13 12 11 15 15 O 1.35743 * 120.03201 * 179.71576 * 14 13 12 16 16 C 1.34832 * 117.00411 * 177.87173 * 15 14 13 17 17 H 1.08005 * 119.99256 * 4.43377 * 16 15 14 18 18 C 1.38648 * 120.00310 * 184.43109 * 16 15 14 19 19 N 1.31555 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99748 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47153 * 60.00451 * 20 18 16 22 22 H 1.48509 * 109.46751 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46948 * 299.99975 * 20 18 16 24 24 C 1.38763 * 119.93645 * 359.44609 * 14 13 12 25 25 C 1.46497 * 120.00441 * 262.00557 * 4 3 2 26 26 C 1.52999 * 109.46954 * 301.99183 * 25 4 3 27 27 C 1.53004 * 109.46795 * 61.99047 * 25 4 3 28 28 H 1.07999 * 119.99576 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.00184 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.00293 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.46852 * 5.00080 * 3 2 1 32 32 H 1.08997 * 109.46870 * 245.00024 * 3 2 1 33 33 H 0.96999 * 119.99807 * 353.76493 * 9 7 5 34 34 H 1.08008 * 119.96866 * 0.02562 * 11 10 9 35 35 H 1.07998 * 119.93312 * 180.02562 * 12 11 10 36 36 H 1.07994 * 119.96394 * 180.27806 * 13 12 11 37 37 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 38 38 H 1.07996 * 120.07113 * 180.24800 * 24 14 13 39 39 H 1.08994 * 109.47189 * 181.98875 * 25 4 3 40 40 H 1.09001 * 109.47316 * 59.99481 * 26 25 4 41 41 H 1.09004 * 109.46881 * 180.02562 * 26 25 4 42 42 H 1.09000 * 109.47533 * 299.99364 * 26 25 4 43 43 H 1.08994 * 109.47515 * 59.99707 * 27 25 4 44 44 H 1.09000 * 109.47102 * 180.02562 * 27 25 4 45 45 H 1.09008 * 109.47058 * 299.99779 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1315 5 6 4.1920 0.7228 1.0331 6 8 4.9519 0.7222 1.9794 7 6 4.5848 0.0483 -0.2403 8 8 3.7877 -0.0394 -1.1514 9 7 5.8242 -0.4629 -0.3777 10 6 6.1510 -1.2067 -1.5144 11 6 5.2061 -2.0473 -2.0916 12 6 5.5289 -2.7831 -3.2152 13 6 6.7894 -2.6821 -3.7724 14 6 7.7402 -1.8484 -3.1972 15 8 8.9799 -1.7542 -3.7419 16 6 9.8403 -0.8941 -3.1607 17 1 9.5553 -0.3717 -2.2594 18 6 11.0908 -0.6801 -3.7201 19 7 11.4377 -1.3161 -4.8183 20 14 12.2830 0.5111 -2.9144 21 1 12.5813 0.0546 -1.5331 22 1 13.5409 0.5612 -3.7022 23 1 11.6744 1.8648 -2.8678 24 6 7.4195 -1.1076 -2.0685 25 6 2.6217 2.0207 2.3696 26 6 2.3110 3.4873 2.0637 27 6 1.3846 1.3524 2.9730 28 1 -0.5399 0.9353 0.0004 29 1 -0.5400 -0.9352 -0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 6.4893 -0.3146 0.3127 34 1 4.2186 -2.1250 -1.6612 35 1 4.7931 -3.4352 -3.6621 36 1 7.0372 -3.2554 -4.6535 37 1 12.3124 -1.1661 -5.2098 38 1 8.1557 -0.4557 -1.6219 39 1 3.4474 1.9645 3.0789 40 1 1.4853 3.5435 1.3543 41 1 2.0346 4.0000 2.9851 42 1 3.1923 3.9635 1.6339 43 1 1.6059 0.3077 3.1909 44 1 1.1075 1.8652 3.8941 45 1 0.5589 1.4087 2.2637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783394113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:07 Heat of formation + Delta-G solvation = -49.264053 kcal Electronic energy + Delta-G solvation = -28295.554210 eV Core-core repulsion = 24279.701616 eV Total energy + Delta-G solvation = -4015.852594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.35206 -40.96824 -39.94506 -38.41134 -38.01993 -35.76758 -34.82817 -34.25048 -32.77294 -31.14545 -30.38232 -28.15635 -27.50814 -27.30954 -26.31543 -23.59303 -23.45238 -21.76730 -21.44762 -20.47039 -19.77993 -19.40891 -18.80090 -18.26099 -17.28268 -17.06754 -16.90041 -16.75197 -16.12896 -15.93484 -15.69877 -15.51782 -15.34324 -15.21772 -14.96267 -14.61913 -14.33892 -14.21718 -14.03051 -13.62355 -13.42627 -13.24929 -13.05706 -12.99611 -12.78928 -12.69893 -12.55558 -12.44220 -12.38667 -12.16158 -12.05539 -11.76727 -11.44975 -11.34310 -10.78054 -10.61752 -10.18686 -9.95555 -9.44019 -8.95086 -8.48144 -6.16868 -0.04897 0.57680 0.69764 1.03883 1.35052 1.43901 1.45304 1.50638 1.98725 2.16634 2.38418 2.80198 3.10423 3.14401 3.46744 3.82281 3.97945 4.05810 4.07058 4.19725 4.25780 4.26988 4.37551 4.47707 4.54791 4.57153 4.65983 4.74378 4.82995 4.90632 4.96602 4.98934 5.07450 5.08876 5.22707 5.25286 5.31041 5.33019 5.37708 5.60372 5.62990 5.73543 5.83097 5.86997 5.99668 6.06261 6.17053 6.55385 6.77970 6.96302 7.74355 8.74362 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002830 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.623723 B = 9891.764412 C =11210.641564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.169 4.169 3 C 0.124 3.876 4 N -0.563 5.563 5 C 0.511 3.489 6 O -0.544 6.544 7 C 0.503 3.497 8 O -0.497 6.497 9 N -0.639 5.639 10 C 0.181 3.819 11 C -0.190 4.190 12 C -0.047 4.047 13 C -0.206 4.206 14 C 0.135 3.865 15 O -0.223 6.223 16 C -0.416 4.416 17 H 0.101 0.899 18 C -0.019 4.019 19 N -0.917 5.917 20 Si 1.015 2.985 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.257 4.257 25 C 0.121 3.879 26 C -0.157 4.157 27 C -0.153 4.153 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.424 0.576 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.123 0.877 37 H 0.274 0.726 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.044 0.956 44 H 0.088 0.912 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.009 7.716 14.679 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.004 3.996 4 N -0.295 5.295 5 C 0.293 3.707 6 O -0.422 6.422 7 C 0.286 3.714 8 O -0.372 6.372 9 N -0.286 5.286 10 C 0.087 3.913 11 C -0.210 4.210 12 C -0.066 4.066 13 C -0.226 4.226 14 C 0.083 3.917 15 O -0.129 6.129 16 C -0.492 4.492 17 H 0.118 0.882 18 C -0.217 4.217 19 N -0.555 5.555 20 Si 0.834 3.166 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.278 4.278 25 C 0.020 3.980 26 C -0.215 4.215 27 C -0.211 4.211 28 H 0.135 0.865 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.262 0.738 34 H 0.152 0.848 35 H 0.178 0.822 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.144 0.856 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.951 7.572 14.262 28.062 hybrid contribution 1.453 0.189 0.254 1.487 sum -21.498 7.760 14.516 27.075 Atomic orbital electron populations 1.23988 0.94885 1.03123 0.98658 1.23027 0.96467 0.97849 1.01465 1.21225 0.92594 0.96876 0.88948 1.48077 1.14270 1.50508 1.16689 1.19862 0.83261 0.80287 0.87332 1.90751 1.52013 1.59947 1.39508 1.20392 0.82492 0.79956 0.88550 1.90747 1.49845 1.55409 1.41164 1.43161 1.13662 1.50599 1.21154 1.17392 0.93440 0.92416 0.88018 1.20799 0.99778 1.00197 1.00270 1.20933 0.94533 0.97093 0.94014 1.20546 0.93710 1.04419 1.03912 1.19594 0.86013 0.94138 0.91927 1.83974 1.18566 1.57517 1.52833 1.21748 0.95207 1.21870 1.10347 0.88171 1.26531 0.98777 0.99785 0.96578 1.70166 1.22145 1.42434 1.20742 0.84700 0.76317 0.77331 0.78229 1.18095 1.19543 1.18364 1.20861 0.98127 1.08143 1.00677 1.21472 0.99159 0.92910 0.84505 1.22147 1.02295 0.93151 1.03874 1.22122 0.96600 1.00318 1.02066 0.86515 0.87772 0.89533 0.87176 0.88409 0.73806 0.84807 0.82244 0.85917 0.91742 0.85634 0.89449 0.90673 0.89001 0.93174 0.93707 0.89315 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 13.64 67.78 0.92 -1.18 16 2 C -0.17 -2.95 8.06 25.65 0.21 -2.75 16 3 C 0.12 2.13 4.69 85.64 0.40 2.53 16 4 N -0.56 -11.11 2.38 -803.82 -1.91 -13.02 16 5 C 0.51 13.35 7.66 87.24 0.67 14.02 16 6 O -0.54 -16.35 15.84 -3.27 -0.05 -16.40 16 7 C 0.50 14.64 7.43 87.24 0.65 15.29 16 8 O -0.50 -15.02 9.82 -3.33 -0.03 -15.05 16 9 N -0.64 -20.08 5.30 -304.88 -1.62 -21.69 16 10 C 0.18 6.71 6.21 38.20 0.24 6.95 16 11 C -0.19 -6.55 8.65 22.43 0.19 -6.35 16 12 C -0.05 -1.61 10.03 22.23 0.22 -1.38 16 13 C -0.21 -8.64 9.99 22.42 0.22 -8.41 16 14 C 0.13 6.65 6.65 22.56 0.15 6.80 16 15 O -0.22 -13.23 9.76 -22.68 -0.22 -13.45 16 16 C -0.42 -23.98 9.48 67.92 0.64 -23.33 16 17 H 0.10 5.30 5.19 -2.91 -0.02 5.29 16 18 C -0.02 -1.05 5.49 84.83 0.47 -0.58 16 19 N -0.92 -55.84 13.67 21.61 0.30 -55.54 16 20 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 C -0.26 -11.26 9.09 22.52 0.20 -11.06 16 25 C 0.12 1.83 3.24 44.99 0.15 1.97 16 26 C -0.16 -1.63 9.15 71.98 0.66 -0.97 16 27 C -0.15 -1.73 8.89 71.98 0.64 -1.09 16 28 H 0.12 0.96 7.84 -2.91 -0.02 0.94 16 29 H 0.10 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.09 1.92 7.48 -2.91 -0.02 1.90 16 31 H 0.11 1.23 6.00 -2.39 -0.01 1.22 16 32 H 0.10 2.12 5.65 -2.39 -0.01 2.11 16 33 H 0.42 12.24 8.33 -92.71 -0.77 11.47 16 34 H 0.13 4.20 6.67 -2.91 -0.02 4.18 16 35 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.13 5.56 5.61 -2.91 -0.02 5.54 16 39 H 0.09 1.65 6.90 -2.39 -0.02 1.63 16 40 H 0.07 0.59 6.60 -2.39 -0.02 0.57 16 41 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.69 6.74 -2.38 -0.02 0.67 16 Total: -1.00 -71.95 374.05 5.38 -66.56 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.26 Total: 33.44 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 6.64 Total: -9.54 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.23 Total: -90.25 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.31 Total: -44.90 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.95 5.38 -66.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783394113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.300 kcal (2) G-P(sol) polarization free energy of solvation -71.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds