Wall clock time and date at job start Tue Mar 31 2020 16:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53000 * 109.47326 * 120.00049 * 2 1 3 5 5 H 1.09005 * 112.77747 * 49.17785 * 4 2 1 6 6 C 1.53238 * 113.38340 * 278.46803 * 4 2 1 7 7 C 1.53499 * 83.42740 * 219.29144 * 6 4 2 8 8 N 1.47059 * 87.98561 * 25.90096 * 7 6 4 9 9 C 1.34783 * 136.05618 * 152.84857 * 8 7 6 10 10 O 1.21353 * 119.99699 * 184.98770 * 9 8 7 11 11 C 1.49349 * 119.99822 * 4.98061 * 9 8 7 12 12 O 1.21375 * 120.00142 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99776 * 180.02562 * 11 9 8 14 14 C 1.39727 * 120.00110 * 175.13821 * 13 11 9 15 15 C 1.39023 * 120.04040 * 35.77619 * 14 13 11 16 16 C 1.38142 * 120.05978 * 180.02562 * 15 14 13 17 17 C 1.38172 * 120.14381 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08439 * 0.04870 * 17 16 15 19 19 O 1.35754 * 120.03075 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00060 * 184.85225 * 19 18 17 21 21 H 1.08002 * 119.99948 * 354.60146 * 20 19 18 22 22 C 1.38647 * 120.00347 * 174.60211 * 20 19 18 23 23 N 1.31557 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00342 * 179.72687 * 22 20 19 25 25 H 1.48495 * 109.47255 * 59.99702 * 24 22 20 26 26 H 1.48501 * 109.47295 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46902 * 299.99623 * 24 22 20 28 28 C 1.38759 * 119.93843 * 0.25202 * 18 17 16 29 29 H 1.08995 * 109.47264 * 304.84438 * 1 2 3 30 30 H 1.09000 * 109.47462 * 64.84839 * 1 2 3 31 31 H 1.09005 * 109.46739 * 184.83937 * 1 2 3 32 32 H 1.09008 * 109.47377 * 240.00327 * 2 1 3 33 33 H 1.09003 * 109.47209 * 292.24071 * 3 2 1 34 34 H 1.09004 * 109.46746 * 52.23914 * 3 2 1 35 35 H 1.09003 * 109.47531 * 172.23932 * 3 2 1 36 36 H 1.09004 * 114.32024 * 105.65686 * 6 4 2 37 37 H 1.08991 * 114.01699 * 332.90763 * 6 4 2 38 38 H 1.08995 * 113.46687 * 271.11685 * 7 6 4 39 39 H 1.09005 * 113.51424 * 140.69256 * 7 6 4 40 40 H 0.97003 * 119.99916 * 355.13194 * 13 11 9 41 41 H 1.08000 * 119.97209 * 0.02562 * 15 14 13 42 42 H 1.08003 * 119.92380 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.95935 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00427 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.06978 * 179.70580 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5613 -1.6884 1.4032 6 6 2.0475 0.1623 2.5012 7 6 3.3733 -0.5570 2.7859 8 7 3.5071 -0.7733 1.3375 9 6 4.5261 -0.9401 0.4712 10 8 4.3044 -1.0123 -0.7197 11 6 5.9281 -1.0358 0.9770 12 8 6.1498 -0.9639 2.1682 13 7 6.9472 -1.2020 0.1107 14 6 8.2658 -1.1898 0.5726 15 6 8.5737 -1.7356 1.8136 16 6 9.8772 -1.7232 2.2708 17 6 10.8788 -1.1693 1.4968 18 6 10.5778 -0.6219 0.2560 19 8 11.5627 -0.0775 -0.5033 20 6 11.1890 0.5256 -1.6499 21 1 10.1587 0.4841 -1.9710 22 6 12.1275 1.1991 -2.4167 23 7 13.3826 1.2493 -2.0258 24 14 11.6113 2.0282 -4.0090 25 1 10.5796 3.0564 -3.7199 26 1 12.7923 2.6740 -4.6364 27 1 11.0518 1.0128 -4.9371 28 6 9.2687 -0.6268 -0.2039 29 1 -0.3633 0.5871 0.8434 30 1 -0.3634 0.4368 -0.9302 31 1 -0.3633 -1.0241 0.0867 32 1 1.8934 -0.5138 -0.8901 33 1 1.7944 1.9147 -0.9512 34 1 1.5677 1.9948 0.8125 35 1 3.1211 1.4457 0.1388 36 1 1.2546 -0.0630 3.2144 37 1 2.1524 1.2269 2.2922 38 1 3.2533 -1.4798 3.3534 39 1 4.1419 0.0955 3.2002 40 1 6.7651 -1.3302 -0.8334 41 1 7.7931 -2.1696 2.4208 42 1 10.1139 -2.1482 3.2351 43 1 11.8969 -1.1617 1.8570 44 1 14.0392 1.7208 -2.5621 45 1 9.0316 -0.1976 -1.1661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785318204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:04 Heat of formation + Delta-G solvation = -23.698780 kcal Electronic energy + Delta-G solvation = -28080.285228 eV Core-core repulsion = 24065.541227 eV Total energy + Delta-G solvation = -4014.744001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.34976 -40.11341 -38.77398 -37.91099 -36.51301 -34.83812 -34.28316 -32.26022 -30.23065 -29.51949 -28.69898 -27.52406 -26.36676 -25.43698 -24.73549 -22.58463 -21.87810 -21.40157 -20.36608 -19.24878 -18.09773 -17.98763 -17.19327 -16.97804 -16.48160 -15.72370 -15.49844 -15.34003 -15.03317 -14.75872 -14.35872 -14.12663 -13.92162 -13.73727 -13.59105 -13.46866 -13.15377 -13.00896 -12.71030 -12.65270 -12.42223 -11.93746 -11.88322 -11.79009 -11.67175 -11.51271 -11.32285 -11.22624 -11.05151 -10.94565 -10.82340 -10.48347 -10.46913 -9.86178 -9.57317 -9.34172 -9.08063 -8.82963 -7.83325 -7.23429 -6.46604 -4.06676 1.25029 1.95473 2.19813 2.37141 3.12790 3.13643 3.16535 3.19549 3.32202 3.94364 3.95647 4.28812 4.41690 4.53880 4.54536 4.58564 4.76698 4.91317 5.05665 5.06334 5.21836 5.25381 5.26459 5.31510 5.37658 5.51655 5.57252 5.60277 5.63481 5.80454 5.82589 5.93057 5.97533 6.03576 6.06088 6.14819 6.19740 6.54993 6.79510 6.88371 7.05445 7.22713 7.24486 7.36111 7.39807 7.68002 7.74408 7.96924 8.05313 8.98658 9.67066 10.71063 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.002797 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.738643 B =10006.668628 C =11577.808131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.140 3.860 5 H 0.098 0.902 6 C -0.160 4.160 7 C 0.106 3.894 8 N -0.619 5.619 9 C 0.539 3.461 10 O -0.517 6.517 11 C 0.506 3.494 12 O -0.499 6.499 13 N -0.637 5.637 14 C 0.171 3.829 15 C -0.203 4.203 16 C -0.065 4.065 17 C -0.194 4.194 18 C 0.167 3.833 19 O -0.173 6.173 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.269 1.269 28 C -0.249 4.249 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.418 0.582 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.271 0.729 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.389 -3.010 7.651 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.038 3.962 5 H 0.115 0.885 6 C -0.198 4.198 7 C -0.016 4.016 8 N -0.355 5.355 9 C 0.323 3.677 10 O -0.392 6.392 11 C 0.287 3.713 12 O -0.373 6.373 13 N -0.283 5.283 14 C 0.079 3.921 15 C -0.224 4.224 16 C -0.084 4.084 17 C -0.214 4.214 18 C 0.112 3.888 19 O -0.077 6.077 20 C -0.470 4.470 21 H 0.108 0.892 22 C -0.163 4.163 23 N -0.496 5.496 24 Si 0.764 3.236 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.271 4.271 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.255 0.745 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.081 0.919 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.708 -2.900 7.627 25.073 hybrid contribution -0.300 0.278 -1.355 1.415 sum -24.008 -2.622 6.271 24.952 Atomic orbital electron populations 1.21761 0.94238 1.01839 1.02170 1.21309 0.95943 0.97036 0.98187 1.21850 1.01346 0.95225 1.01595 1.22881 0.78751 0.98853 0.95725 0.88469 1.23665 0.98030 1.00915 0.97187 1.23037 0.97087 1.00283 0.81212 1.49425 1.06282 1.69710 1.10044 1.19641 0.85057 0.77604 0.85430 1.90763 1.84610 1.48933 1.14900 1.20027 0.85882 0.78630 0.86726 1.90745 1.84464 1.46900 1.15167 1.43115 1.04297 1.68758 1.12155 1.17410 0.81374 0.98176 0.95169 1.20653 0.96921 1.07786 0.97023 1.20543 0.91865 0.97638 0.98309 1.20298 0.99878 1.07176 0.94041 1.19060 0.87365 0.91855 0.90506 1.84010 1.29830 1.62310 1.31516 1.21247 0.96329 1.32544 0.96912 0.89203 1.25273 0.94831 0.96764 0.99476 1.70024 1.01436 1.39811 1.38339 0.85800 0.78260 0.79365 0.80146 1.19491 1.20228 1.19445 1.20859 0.92662 1.10058 1.03509 0.92405 0.92261 0.92579 0.89475 0.92593 0.92389 0.92670 0.88887 0.87817 0.89290 0.89035 0.74506 0.85913 0.86441 0.86219 0.91915 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.17 37.16 0.34 -0.50 16 2 C -0.11 -0.88 2.67 -90.62 -0.24 -1.13 16 3 C -0.14 -1.26 8.10 37.16 0.30 -0.96 16 4 C 0.14 1.10 3.83 -72.54 -0.28 0.83 16 5 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 6 C -0.16 -0.94 7.66 -26.35 -0.20 -1.14 16 7 C 0.11 0.88 7.53 -8.52 -0.06 0.82 16 8 N -0.62 -6.80 2.99 -178.18 -0.53 -7.33 16 9 C 0.54 7.63 7.67 -11.63 -0.09 7.54 16 10 O -0.52 -8.13 15.98 5.49 0.09 -8.05 16 11 C 0.51 8.06 7.73 -11.63 -0.09 7.97 16 12 O -0.50 -8.53 12.79 5.47 0.07 -8.46 16 13 N -0.64 -10.61 5.31 -10.31 -0.05 -10.66 16 14 C 0.17 3.33 6.28 -83.77 -0.53 2.80 16 15 C -0.20 -3.84 8.69 -39.33 -0.34 -4.18 16 16 C -0.06 -1.19 10.03 -39.64 -0.40 -1.59 16 17 C -0.19 -4.11 9.99 -39.35 -0.39 -4.50 16 18 C 0.17 4.02 6.65 -39.14 -0.26 3.76 16 19 O -0.17 -4.92 9.76 0.04 0.00 -4.92 16 20 C -0.39 -10.97 9.48 30.88 0.29 -10.67 16 21 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 23 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 24 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.25 -5.46 9.09 -39.19 -0.36 -5.81 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.95 7.26 -51.92 -0.38 0.58 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.41 6.59 -51.93 -0.34 0.06 16 35 H 0.05 0.62 7.25 -51.93 -0.38 0.24 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.64 5.69 -51.93 -0.30 0.34 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.87 7.59 -51.93 -0.39 0.48 16 40 H 0.42 6.27 8.30 -40.82 -0.34 5.93 16 41 H 0.12 2.22 6.26 -52.49 -0.33 1.89 16 42 H 0.12 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.13 2.86 5.63 -52.49 -0.30 2.57 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -32.70 372.63 -7.44 -40.14 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.96 Total: 8.28 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.40 Total: -5.75 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.17 Total: -42.40 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: 0.16 Total: -21.42 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.70 -7.44 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785318204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.446 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds