Wall clock time and date at job start Tue Mar 31 2020 16:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53000 * 109.47326 * 120.00049 * 2 1 3 5 5 H 1.09005 * 112.77747 * 49.17785 * 4 2 1 6 6 C 1.53238 * 113.38340 * 278.46803 * 4 2 1 7 7 C 1.53499 * 83.42740 * 219.29144 * 6 4 2 8 8 N 1.47059 * 87.98561 * 25.90096 * 7 6 4 9 9 C 1.34783 * 136.05618 * 152.84857 * 8 7 6 10 10 O 1.21353 * 119.99699 * 184.98770 * 9 8 7 11 11 C 1.49349 * 119.99822 * 4.98061 * 9 8 7 12 12 O 1.21375 * 120.00142 * 0.02562 * 11 9 8 13 13 N 1.34781 * 119.99776 * 180.02562 * 11 9 8 14 14 C 1.39727 * 120.00110 * 175.13821 * 13 11 9 15 15 C 1.39023 * 120.04040 * 35.77619 * 14 13 11 16 16 C 1.38142 * 120.05978 * 180.02562 * 15 14 13 17 17 C 1.38172 * 120.14381 * 359.97438 * 16 15 14 18 18 C 1.38919 * 120.08439 * 0.04870 * 17 16 15 19 19 O 1.35754 * 120.03075 * 179.97438 * 18 17 16 20 20 C 1.34828 * 117.00060 * 184.85225 * 19 18 17 21 21 H 1.08002 * 119.99948 * 354.60146 * 20 19 18 22 22 C 1.38647 * 120.00347 * 174.60211 * 20 19 18 23 23 N 1.31557 * 119.99808 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00342 * 179.72687 * 22 20 19 25 25 H 1.48495 * 109.47255 * 59.99702 * 24 22 20 26 26 H 1.48501 * 109.47295 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46902 * 299.99623 * 24 22 20 28 28 C 1.38759 * 119.93843 * 0.25202 * 18 17 16 29 29 H 1.08995 * 109.47264 * 304.84438 * 1 2 3 30 30 H 1.09000 * 109.47462 * 64.84839 * 1 2 3 31 31 H 1.09005 * 109.46739 * 184.83937 * 1 2 3 32 32 H 1.09008 * 109.47377 * 240.00327 * 2 1 3 33 33 H 1.09003 * 109.47209 * 292.24071 * 3 2 1 34 34 H 1.09004 * 109.46746 * 52.23914 * 3 2 1 35 35 H 1.09003 * 109.47531 * 172.23932 * 3 2 1 36 36 H 1.09004 * 114.32024 * 105.65686 * 6 4 2 37 37 H 1.08991 * 114.01699 * 332.90763 * 6 4 2 38 38 H 1.08995 * 113.46687 * 271.11685 * 7 6 4 39 39 H 1.09005 * 113.51424 * 140.69256 * 7 6 4 40 40 H 0.97003 * 119.99916 * 355.13194 * 13 11 9 41 41 H 1.08000 * 119.97209 * 0.02562 * 15 14 13 42 42 H 1.08003 * 119.92380 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.95935 * 180.02562 * 17 16 15 44 44 H 0.97000 * 120.00427 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.06978 * 179.70580 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.5613 -1.6884 1.4032 6 6 2.0475 0.1623 2.5012 7 6 3.3733 -0.5570 2.7859 8 7 3.5071 -0.7733 1.3375 9 6 4.5261 -0.9401 0.4712 10 8 4.3044 -1.0123 -0.7197 11 6 5.9281 -1.0358 0.9770 12 8 6.1498 -0.9639 2.1682 13 7 6.9472 -1.2020 0.1107 14 6 8.2658 -1.1898 0.5726 15 6 8.5737 -1.7356 1.8136 16 6 9.8772 -1.7232 2.2708 17 6 10.8788 -1.1693 1.4968 18 6 10.5778 -0.6219 0.2560 19 8 11.5627 -0.0775 -0.5033 20 6 11.1890 0.5256 -1.6499 21 1 10.1587 0.4841 -1.9710 22 6 12.1275 1.1991 -2.4167 23 7 13.3826 1.2493 -2.0258 24 14 11.6113 2.0282 -4.0090 25 1 10.5796 3.0564 -3.7199 26 1 12.7923 2.6740 -4.6364 27 1 11.0518 1.0128 -4.9371 28 6 9.2687 -0.6268 -0.2039 29 1 -0.3633 0.5871 0.8434 30 1 -0.3634 0.4368 -0.9302 31 1 -0.3633 -1.0241 0.0867 32 1 1.8934 -0.5138 -0.8901 33 1 1.7944 1.9147 -0.9512 34 1 1.5677 1.9948 0.8125 35 1 3.1211 1.4457 0.1388 36 1 1.2546 -0.0630 3.2144 37 1 2.1524 1.2269 2.2922 38 1 3.2533 -1.4798 3.3534 39 1 4.1419 0.0955 3.2002 40 1 6.7651 -1.3302 -0.8334 41 1 7.7931 -2.1696 2.4208 42 1 10.1139 -2.1482 3.2351 43 1 11.8969 -1.1617 1.8570 44 1 14.0392 1.7208 -2.5621 45 1 9.0316 -0.1976 -1.1661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785318204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:03 Heat of formation + Delta-G solvation = -44.974886 kcal Electronic energy + Delta-G solvation = -28081.207829 eV Core-core repulsion = 24065.541227 eV Total energy + Delta-G solvation = -4015.666602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35725 -41.35008 -40.37263 -39.05845 -38.18525 -35.89739 -35.37820 -34.26499 -31.21387 -31.03912 -30.35372 -28.11827 -27.46676 -27.00846 -25.88567 -23.61087 -23.54283 -22.46727 -21.53948 -20.43415 -19.76993 -19.22640 -18.67964 -18.04929 -17.38739 -17.04844 -16.86799 -16.66366 -16.46648 -16.02649 -15.89556 -15.55542 -15.42332 -14.99114 -14.70644 -14.57329 -14.23012 -14.13872 -13.95662 -13.61825 -13.30992 -13.29552 -13.20197 -13.04411 -12.72592 -12.60098 -12.55689 -12.46487 -12.18453 -12.15514 -11.93258 -11.84041 -11.46116 -11.36800 -11.13488 -10.78957 -10.59312 -9.92520 -9.46176 -8.98587 -8.49391 -6.18316 -0.04453 0.54364 0.66073 1.05566 1.33731 1.43818 1.49232 1.99276 2.15290 2.23649 2.78003 3.06429 3.12278 3.39429 3.45974 3.79264 3.88937 4.00076 4.05293 4.16547 4.26606 4.34621 4.37007 4.43778 4.55127 4.56299 4.60809 4.65987 4.75696 4.79458 4.95001 4.97427 5.02282 5.06014 5.07336 5.22919 5.25704 5.26501 5.30009 5.39728 5.47345 5.58536 5.61891 5.95013 5.98283 6.12818 6.32775 6.50437 6.79371 6.94915 7.72651 8.72995 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.002797 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.738643 B =10006.668628 C =11577.808131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.134 3.866 5 H 0.120 0.880 6 C -0.137 4.137 7 C 0.098 3.902 8 N -0.619 5.619 9 C 0.536 3.464 10 O -0.543 6.543 11 C 0.507 3.493 12 O -0.510 6.510 13 N -0.638 5.638 14 C 0.175 3.825 15 C -0.192 4.192 16 C -0.049 4.049 17 C -0.204 4.204 18 C 0.134 3.866 19 O -0.222 6.222 20 C -0.416 4.416 21 H 0.099 0.901 22 C -0.018 4.018 23 N -0.916 5.916 24 Si 1.014 2.986 25 H -0.260 1.260 26 H -0.269 1.269 27 H -0.257 1.257 28 C -0.257 4.257 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.424 0.576 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.124 0.876 44 H 0.274 0.726 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.166 -3.439 9.328 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.198 4.198 4 C 0.033 3.967 5 H 0.137 0.863 6 C -0.175 4.175 7 C -0.024 4.024 8 N -0.354 5.354 9 C 0.319 3.681 10 O -0.421 6.421 11 C 0.289 3.711 12 O -0.384 6.384 13 N -0.285 5.285 14 C 0.082 3.918 15 C -0.213 4.213 16 C -0.067 4.067 17 C -0.224 4.224 18 C 0.082 3.918 19 O -0.128 6.128 20 C -0.492 4.492 21 H 0.117 0.883 22 C -0.216 4.216 23 N -0.554 5.554 24 Si 0.834 3.166 25 H -0.185 1.185 26 H -0.194 1.194 27 H -0.181 1.181 28 C -0.278 4.278 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.262 0.738 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.142 0.858 44 H 0.083 0.917 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.568 -3.351 9.363 29.307 hybrid contribution 0.642 0.281 -1.598 1.745 sum -26.926 -3.070 7.765 28.191 Atomic orbital electron populations 1.21716 0.91911 1.02859 1.02853 1.21275 0.97789 0.96168 0.97197 1.21843 0.99568 0.96137 1.02271 1.23267 0.76520 1.00496 0.96417 0.86276 1.23632 0.97448 1.00107 0.96279 1.23342 0.98027 1.01429 0.79587 1.49737 1.07154 1.67306 1.11180 1.19257 0.84818 0.78445 0.85553 1.90753 1.84709 1.50820 1.15837 1.20474 0.86587 0.77615 0.86421 1.90716 1.84887 1.47257 1.15582 1.43118 1.03511 1.68991 1.12842 1.17458 0.82159 0.97128 0.95079 1.21003 0.97580 1.06183 0.96506 1.20983 0.90742 0.95715 0.99282 1.20570 1.01099 1.07280 0.93411 1.19596 0.87851 0.92753 0.91578 1.83975 1.31767 1.64523 1.32560 1.21729 0.97078 1.32999 0.97416 0.88329 1.26521 0.94671 0.97195 1.03224 1.70161 1.02875 1.41888 1.40452 0.84709 0.78220 0.78430 0.75270 1.18464 1.19379 1.18147 1.20857 0.92659 1.10583 1.03707 0.90535 0.92605 0.91592 0.92688 0.93124 0.90068 0.95593 0.84997 0.88063 0.87236 0.90499 0.73753 0.84252 0.82086 0.85758 0.91704 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.17 71.98 0.66 -0.55 16 2 C -0.11 -1.58 2.67 -10.79 -0.03 -1.61 16 3 C -0.14 -2.33 8.10 71.98 0.58 -1.75 16 4 C 0.13 1.72 3.83 41.70 0.16 1.88 16 5 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 6 C -0.14 -1.05 7.66 30.84 0.24 -0.82 16 7 C 0.10 1.33 7.53 83.18 0.63 1.96 16 8 N -0.62 -12.54 2.99 -835.98 -2.50 -15.04 16 9 C 0.54 14.91 7.67 87.24 0.67 15.58 16 10 O -0.54 -17.29 15.98 -3.26 -0.05 -17.34 16 11 C 0.51 15.74 7.73 87.24 0.67 16.42 16 12 O -0.51 -16.63 12.79 -3.32 -0.04 -16.67 16 13 N -0.64 -21.09 5.31 -304.89 -1.62 -22.71 16 14 C 0.18 6.75 6.28 38.20 0.24 6.99 16 15 C -0.19 -6.88 8.69 22.44 0.19 -6.68 16 16 C -0.05 -1.69 10.03 22.23 0.22 -1.47 16 17 C -0.20 -8.66 9.99 22.42 0.22 -8.43 16 18 C 0.13 6.70 6.65 22.56 0.15 6.85 16 19 O -0.22 -13.31 9.76 -22.76 -0.22 -13.53 16 20 C -0.42 -24.29 9.48 67.92 0.64 -23.65 16 21 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 22 C -0.02 -1.02 5.49 84.83 0.47 -0.55 16 23 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16 24 Si 1.01 43.21 29.55 68.60 2.03 45.23 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 28 C -0.26 -11.54 9.09 22.52 0.20 -11.34 16 29 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 1.20 7.26 -2.38 -0.02 1.18 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.93 6.59 -2.39 -0.02 0.91 16 35 H 0.02 0.57 7.25 -2.39 -0.02 0.55 16 36 H 0.13 0.12 8.14 -2.38 -0.02 0.10 16 37 H 0.10 0.88 5.69 -2.39 -0.01 0.87 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.31 7.59 -2.38 -0.02 1.29 16 40 H 0.42 12.90 8.30 -92.71 -0.77 12.13 16 41 H 0.14 4.62 6.26 -2.91 -0.02 4.60 16 42 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.13 5.68 5.63 -2.91 -0.02 5.66 16 Total: -1.00 -75.99 372.63 4.08 -71.92 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.27 Total: 31.09 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.93 Total: -7.19 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -3.83 Total: -93.51 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.32 Total: -47.55 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.99 4.08 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785318204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.940 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds