Wall clock time and date at job start Tue Mar 31 2020 16:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.53004 * 109.46963 * 119.99752 * 2 1 3 5 5 H 1.08997 * 112.77987 * 189.80463 * 4 2 1 6 6 C 1.53752 * 113.55249 * 320.66417 * 4 2 1 7 7 C 1.53496 * 83.26212 * 140.98470 * 6 4 2 8 8 N 1.47069 * 87.98208 * 333.76226 * 7 6 4 9 9 C 1.34773 * 136.05606 * 207.08027 * 8 7 6 10 10 O 1.21367 * 120.00115 * 174.98784 * 9 8 7 11 11 C 1.49350 * 120.00472 * 354.99595 * 9 8 7 12 12 O 1.21377 * 119.99462 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00472 * 180.02562 * 11 9 8 14 14 C 1.39725 * 120.00129 * 185.20246 * 13 11 9 15 15 C 1.39027 * 120.04082 * 34.70688 * 14 13 11 16 16 C 1.38145 * 120.05746 * 180.25776 * 15 14 13 17 17 C 1.38173 * 120.14622 * 359.74018 * 16 15 14 18 18 C 1.38925 * 120.08578 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.03141 * 180.02562 * 18 17 16 20 20 C 1.34833 * 116.99647 * 174.47730 * 19 18 17 21 21 H 1.08003 * 120.00237 * 5.05337 * 20 19 18 22 22 C 1.38652 * 119.99892 * 185.05039 * 20 19 18 23 23 N 1.31557 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00000 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46873 * 90.00239 * 24 22 20 26 26 H 1.48498 * 109.47167 * 210.00306 * 24 22 20 27 27 H 1.48499 * 109.47032 * 330.00304 * 24 22 20 28 28 C 1.38760 * 119.93408 * 359.97438 * 18 17 16 29 29 H 1.08995 * 109.47372 * 305.54181 * 1 2 3 30 30 H 1.09005 * 109.46585 * 65.53987 * 1 2 3 31 31 H 1.08995 * 109.47456 * 185.53265 * 1 2 3 32 32 H 1.09004 * 109.47686 * 239.99446 * 2 1 3 33 33 H 1.08996 * 109.47210 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46876 * 299.99715 * 3 2 1 35 35 H 1.08996 * 109.46895 * 59.99718 * 3 2 1 36 36 H 1.09005 * 114.39860 * 27.42089 * 6 4 2 37 37 H 1.08997 * 114.08570 * 254.52617 * 6 4 2 38 38 H 1.08993 * 113.46874 * 218.98461 * 7 6 4 39 39 H 1.09001 * 113.46646 * 88.53675 * 7 6 4 40 40 H 0.97005 * 120.00189 * 5.19613 * 13 11 9 41 41 H 1.07997 * 119.97019 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.92155 * 179.72187 * 16 15 14 43 43 H 1.07996 * 119.96059 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99758 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.06957 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1143 -0.6069 1.3936 6 6 1.2169 -0.4188 2.5123 7 6 1.4468 -1.9089 2.7998 8 7 1.5805 -2.1147 1.3497 9 6 1.3771 -3.1337 0.4913 10 8 1.4997 -2.9549 -0.7028 11 6 1.0008 -4.4829 1.0095 12 8 0.8785 -4.6618 2.2038 13 7 0.7979 -5.5020 0.1512 14 6 0.3407 -6.7342 0.6253 15 6 -0.5494 -6.7827 1.6922 16 6 -0.9976 -8.0010 2.1646 17 6 -0.5672 -9.1745 1.5757 18 6 0.3185 -9.1330 0.5062 19 8 0.7402 -10.2865 -0.0720 20 6 1.5071 -10.1735 -1.1752 21 1 1.8270 -9.1989 -1.5130 22 6 1.8850 -11.3087 -1.8759 23 7 1.4950 -12.4959 -1.4647 24 14 2.9469 -11.1521 -3.4048 25 1 4.3800 -11.2145 -3.0205 26 1 2.6362 -12.2636 -4.3393 27 1 2.6688 -9.8538 -4.0698 28 6 0.7708 -7.9111 0.0288 29 1 -0.3634 0.5973 0.8362 30 1 -0.3633 0.4255 -0.9355 31 1 -0.3634 -1.0228 0.0991 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.1767 -0.1560 2.3197 37 1 1.7104 0.2531 3.2145 38 1 0.5783 -2.4069 3.2306 39 1 2.3649 -2.1077 3.3527 40 1 0.9693 -5.3800 -0.7958 41 1 -0.8880 -5.8672 2.1543 42 1 -1.6856 -8.0363 2.9964 43 1 -0.9191 -10.1253 1.9477 44 1 1.7591 -13.2899 -1.9552 45 1 1.4596 -7.8762 -0.8022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785318205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:08 Heat of formation + Delta-G solvation = -24.417568 kcal Electronic energy + Delta-G solvation = -28017.683053 eV Core-core repulsion = 24002.907883 eV Total energy + Delta-G solvation = -4014.775170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34313 -40.10414 -38.77734 -37.90735 -36.52624 -34.85035 -34.28561 -32.26493 -30.23106 -29.53061 -28.70102 -27.53933 -26.37524 -25.43647 -24.75090 -22.60410 -21.89682 -21.40623 -20.35818 -19.24950 -18.07768 -18.00498 -17.25611 -16.98024 -16.45465 -15.68396 -15.55298 -15.33996 -15.06861 -14.66959 -14.37511 -14.18461 -13.86418 -13.80631 -13.60363 -13.49625 -13.11849 -13.04655 -12.71668 -12.66846 -12.42556 -11.95299 -11.89199 -11.78200 -11.68055 -11.55093 -11.33254 -11.22697 -11.07989 -10.96821 -10.81437 -10.48392 -10.46174 -9.90642 -9.57056 -9.38804 -9.08325 -8.83584 -7.83049 -7.23385 -6.47212 -4.07134 1.22470 2.02663 2.14609 2.34613 3.11641 3.12976 3.17569 3.22199 3.29686 3.92122 3.95008 4.28741 4.40976 4.52661 4.53883 4.56877 4.74838 4.90272 5.05140 5.06802 5.20966 5.23453 5.25220 5.29606 5.35930 5.50042 5.55699 5.58476 5.61773 5.78347 5.80287 5.89537 5.97180 6.01054 6.04581 6.14102 6.18404 6.53690 6.78716 6.86768 7.04716 7.21788 7.23352 7.35001 7.39446 7.67456 7.73253 7.96410 8.04929 8.98145 9.66545 10.70508 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.002589 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.106450 B =10811.812043 C =12046.006824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.142 4.142 4 C 0.140 3.860 5 H 0.098 0.902 6 C -0.159 4.159 7 C 0.106 3.894 8 N -0.618 5.618 9 C 0.538 3.462 10 O -0.516 6.516 11 C 0.506 3.494 12 O -0.498 6.498 13 N -0.638 5.638 14 C 0.175 3.825 15 C -0.204 4.204 16 C -0.062 4.062 17 C -0.195 4.195 18 C 0.168 3.832 19 O -0.174 6.174 20 C -0.394 4.394 21 H 0.091 0.909 22 C 0.041 3.959 23 N -0.861 5.861 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.250 4.250 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.418 0.582 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.270 0.730 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 25.781 6.192 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.124 4.124 3 C -0.200 4.200 4 C 0.037 3.963 5 H 0.116 0.884 6 C -0.197 4.197 7 C -0.016 4.016 8 N -0.355 5.355 9 C 0.322 3.678 10 O -0.392 6.392 11 C 0.287 3.713 12 O -0.372 6.372 13 N -0.284 5.284 14 C 0.082 3.918 15 C -0.224 4.224 16 C -0.081 4.081 17 C -0.215 4.215 18 C 0.114 3.886 19 O -0.077 6.077 20 C -0.470 4.470 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.765 3.235 25 H -0.199 1.199 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.272 4.272 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.255 0.745 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.080 0.920 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.460 25.097 6.214 25.858 hybrid contribution 0.835 0.017 -1.297 1.542 sum 0.375 25.114 4.917 25.593 Atomic orbital electron populations 1.21838 0.94664 1.01928 1.01511 1.21297 0.96719 0.96233 0.98161 1.21755 1.00970 0.95174 1.02134 1.22988 0.99048 0.78563 0.95663 0.88437 1.23742 1.02266 0.96607 0.97079 1.23035 1.03257 0.94106 0.81214 1.49453 1.64382 1.11682 1.09938 1.19648 0.78573 0.84017 0.85524 1.90767 1.50708 1.83072 1.14649 1.20024 0.79148 0.85382 0.86735 1.90763 1.48288 1.83282 1.14847 1.43152 1.63419 1.09969 1.11872 1.17384 0.95059 0.82849 0.96468 1.20492 1.02748 0.98102 1.01089 1.20512 0.98220 0.91286 0.98114 1.20289 1.02917 0.98571 0.99724 1.19062 0.91500 0.86046 0.92040 1.84008 1.59690 1.24960 1.39007 1.21297 1.28610 0.94974 1.02101 0.89146 1.25280 0.97886 0.94242 0.98985 1.70035 1.42666 0.97751 1.39113 0.85723 0.79444 0.78505 0.79844 1.19871 1.20199 1.19157 1.20842 1.08494 0.90670 1.07163 0.92406 0.92644 0.92711 0.89509 0.92562 0.92246 0.92411 0.87830 0.88925 0.89078 0.89266 0.74493 0.86505 0.86423 0.86191 0.91966 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.20 37.16 0.30 -0.87 16 2 C -0.11 -0.85 2.65 -90.62 -0.24 -1.09 16 3 C -0.14 -0.82 9.17 37.16 0.34 -0.48 16 4 C 0.14 1.09 3.84 -72.25 -0.28 0.81 16 5 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.16 -0.89 7.67 -26.08 -0.20 -1.09 16 7 C 0.11 0.87 7.51 -8.50 -0.06 0.81 16 8 N -0.62 -6.75 3.00 -177.82 -0.53 -7.29 16 9 C 0.54 7.59 7.58 -11.63 -0.09 7.50 16 10 O -0.52 -8.09 16.01 5.48 0.09 -8.00 16 11 C 0.51 8.05 7.61 -11.63 -0.09 7.97 16 12 O -0.50 -8.57 13.11 5.47 0.07 -8.50 16 13 N -0.64 -10.64 5.32 -10.31 -0.05 -10.70 16 14 C 0.17 3.40 6.25 -83.77 -0.52 2.88 16 15 C -0.20 -3.83 8.65 -39.32 -0.34 -4.17 16 16 C -0.06 -1.15 10.03 -39.64 -0.40 -1.55 16 17 C -0.20 -4.13 9.99 -39.35 -0.39 -4.52 16 18 C 0.17 4.06 6.64 -39.13 -0.26 3.80 16 19 O -0.17 -4.91 9.76 0.04 0.00 -4.91 16 20 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16 21 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 22 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 24 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 28 C -0.25 -5.48 9.08 -39.19 -0.36 -5.83 16 29 H 0.06 0.37 6.46 -51.93 -0.34 0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.58 7.20 -51.93 -0.37 0.20 16 32 H 0.09 0.93 7.31 -51.93 -0.38 0.55 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.58 5.73 -51.93 -0.30 0.28 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.83 7.60 -51.93 -0.39 0.43 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.42 6.31 8.30 -40.82 -0.34 5.97 16 41 H 0.12 2.09 6.51 -52.49 -0.34 1.75 16 42 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 LS Contribution 372.95 15.07 5.62 5.62 Total: -1.00 -32.76 372.95 -7.43 -40.18 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.97 Total: 7.93 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.39 Total: -5.46 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.17 Total: -42.34 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: 0.16 Total: -21.41 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.76 -7.43 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785318205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.767 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds