Wall clock time and date at job start Tue Mar 31 2020 16:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.53004 * 109.46963 * 119.99752 * 2 1 3 5 5 H 1.08997 * 112.77987 * 189.80463 * 4 2 1 6 6 C 1.53752 * 113.55249 * 320.66417 * 4 2 1 7 7 C 1.53496 * 83.26212 * 140.98470 * 6 4 2 8 8 N 1.47069 * 87.98208 * 333.76226 * 7 6 4 9 9 C 1.34773 * 136.05606 * 207.08027 * 8 7 6 10 10 O 1.21367 * 120.00115 * 174.98784 * 9 8 7 11 11 C 1.49350 * 120.00472 * 354.99595 * 9 8 7 12 12 O 1.21377 * 119.99462 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00472 * 180.02562 * 11 9 8 14 14 C 1.39725 * 120.00129 * 185.20246 * 13 11 9 15 15 C 1.39027 * 120.04082 * 34.70688 * 14 13 11 16 16 C 1.38145 * 120.05746 * 180.25776 * 15 14 13 17 17 C 1.38173 * 120.14622 * 359.74018 * 16 15 14 18 18 C 1.38925 * 120.08578 * 0.02562 * 17 16 15 19 19 O 1.35749 * 120.03141 * 180.02562 * 18 17 16 20 20 C 1.34833 * 116.99647 * 174.47730 * 19 18 17 21 21 H 1.08003 * 120.00237 * 5.05337 * 20 19 18 22 22 C 1.38652 * 119.99892 * 185.05039 * 20 19 18 23 23 N 1.31557 * 119.99840 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00000 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46873 * 90.00239 * 24 22 20 26 26 H 1.48498 * 109.47167 * 210.00306 * 24 22 20 27 27 H 1.48499 * 109.47032 * 330.00304 * 24 22 20 28 28 C 1.38760 * 119.93408 * 359.97438 * 18 17 16 29 29 H 1.08995 * 109.47372 * 305.54181 * 1 2 3 30 30 H 1.09005 * 109.46585 * 65.53987 * 1 2 3 31 31 H 1.08995 * 109.47456 * 185.53265 * 1 2 3 32 32 H 1.09004 * 109.47686 * 239.99446 * 2 1 3 33 33 H 1.08996 * 109.47210 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46876 * 299.99715 * 3 2 1 35 35 H 1.08996 * 109.46895 * 59.99718 * 3 2 1 36 36 H 1.09005 * 114.39860 * 27.42089 * 6 4 2 37 37 H 1.08997 * 114.08570 * 254.52617 * 6 4 2 38 38 H 1.08993 * 113.46874 * 218.98461 * 7 6 4 39 39 H 1.09001 * 113.46646 * 88.53675 * 7 6 4 40 40 H 0.97005 * 120.00189 * 5.19613 * 13 11 9 41 41 H 1.07997 * 119.97019 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.92155 * 179.72187 * 16 15 14 43 43 H 1.07996 * 119.96059 * 179.97438 * 17 16 15 44 44 H 0.96999 * 119.99758 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.06957 * 179.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1143 -0.6069 1.3936 6 6 1.2169 -0.4188 2.5123 7 6 1.4468 -1.9089 2.7998 8 7 1.5805 -2.1147 1.3497 9 6 1.3771 -3.1337 0.4913 10 8 1.4997 -2.9549 -0.7028 11 6 1.0008 -4.4829 1.0095 12 8 0.8785 -4.6618 2.2038 13 7 0.7979 -5.5020 0.1512 14 6 0.3407 -6.7342 0.6253 15 6 -0.5494 -6.7827 1.6922 16 6 -0.9976 -8.0010 2.1646 17 6 -0.5672 -9.1745 1.5757 18 6 0.3185 -9.1330 0.5062 19 8 0.7402 -10.2865 -0.0720 20 6 1.5071 -10.1735 -1.1752 21 1 1.8270 -9.1989 -1.5130 22 6 1.8850 -11.3087 -1.8759 23 7 1.4950 -12.4959 -1.4647 24 14 2.9469 -11.1521 -3.4048 25 1 4.3800 -11.2145 -3.0205 26 1 2.6362 -12.2636 -4.3393 27 1 2.6688 -9.8538 -4.0698 28 6 0.7708 -7.9111 0.0288 29 1 -0.3634 0.5973 0.8362 30 1 -0.3633 0.4255 -0.9355 31 1 -0.3634 -1.0228 0.0991 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 0.1767 -0.1560 2.3197 37 1 1.7104 0.2531 3.2145 38 1 0.5783 -2.4069 3.2306 39 1 2.3649 -2.1077 3.3527 40 1 0.9693 -5.3800 -0.7958 41 1 -0.8880 -5.8672 2.1543 42 1 -1.6856 -8.0363 2.9964 43 1 -0.9191 -10.1253 1.9477 44 1 1.7591 -13.2899 -1.9552 45 1 1.4596 -7.8762 -0.8022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785318205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:07 Heat of formation + Delta-G solvation = -45.749326 kcal Electronic energy + Delta-G solvation = -28018.608067 eV Core-core repulsion = 24002.907883 eV Total energy + Delta-G solvation = -4015.700184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35001 -41.33673 -40.36924 -39.04716 -38.19668 -35.89639 -35.37126 -34.26393 -31.21962 -31.03211 -30.35486 -28.09595 -27.46093 -27.01604 -25.88680 -23.61655 -23.55514 -22.45804 -21.53089 -20.43262 -19.76148 -19.22532 -18.72203 -18.03375 -17.36786 -17.05266 -16.86191 -16.60648 -16.56119 -15.97535 -15.81567 -15.59626 -15.43517 -15.01181 -14.68539 -14.60462 -14.25669 -14.14035 -13.90835 -13.60956 -13.36321 -13.28087 -13.18633 -13.01456 -12.75325 -12.59651 -12.53738 -12.45896 -12.20647 -12.14004 -11.92443 -11.82043 -11.49199 -11.36416 -11.13485 -10.79449 -10.62189 -9.92395 -9.46539 -8.97675 -8.49385 -6.18219 -0.07143 0.56682 0.68487 1.01899 1.34160 1.42740 1.51034 2.00104 2.15354 2.23111 2.78352 3.06259 3.12951 3.38450 3.44702 3.80286 3.89569 4.00109 4.04595 4.16613 4.24210 4.34773 4.36384 4.44034 4.54445 4.55643 4.61490 4.66904 4.75747 4.81413 4.95205 4.96511 5.03047 5.06683 5.07583 5.23548 5.24413 5.26443 5.29231 5.41497 5.47948 5.57938 5.61068 5.93711 5.98426 6.12350 6.32587 6.50126 6.79112 6.94999 7.72652 8.73175 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.002589 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.106450 B =10811.812043 C =12046.006824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.132 3.868 5 H 0.115 0.885 6 C -0.134 4.134 7 C 0.097 3.903 8 N -0.619 5.619 9 C 0.536 3.464 10 O -0.542 6.542 11 C 0.507 3.493 12 O -0.510 6.510 13 N -0.639 5.639 14 C 0.179 3.821 15 C -0.193 4.193 16 C -0.047 4.047 17 C -0.205 4.205 18 C 0.135 3.865 19 O -0.222 6.222 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.019 4.019 23 N -0.916 5.916 24 Si 1.016 2.984 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.254 1.254 28 C -0.258 4.258 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.424 0.576 41 H 0.135 0.865 42 H 0.162 0.838 43 H 0.125 0.875 44 H 0.274 0.726 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 29.612 7.574 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.194 4.194 4 C 0.031 3.969 5 H 0.133 0.867 6 C -0.171 4.171 7 C -0.025 4.025 8 N -0.354 5.354 9 C 0.319 3.681 10 O -0.421 6.421 11 C 0.289 3.711 12 O -0.385 6.385 13 N -0.286 5.286 14 C 0.085 3.915 15 C -0.213 4.213 16 C -0.065 4.065 17 C -0.225 4.225 18 C 0.084 3.916 19 O -0.128 6.128 20 C -0.491 4.491 21 H 0.117 0.883 22 C -0.217 4.217 23 N -0.554 5.554 24 Si 0.835 3.165 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.178 1.178 28 C -0.279 4.279 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.262 0.738 41 H 0.152 0.848 42 H 0.180 0.820 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.273 29.020 7.651 30.013 hybrid contribution 0.654 -0.891 -1.484 1.851 sum 0.380 28.128 6.167 28.799 Atomic orbital electron populations 1.21826 0.94890 1.00568 1.02407 1.21263 0.96509 0.97600 0.96991 1.21712 1.01326 0.93302 1.03049 1.23374 1.00490 0.76417 0.96646 0.86740 1.23708 1.02360 0.95183 0.95850 1.23337 1.03660 0.95964 0.79533 1.49767 1.62511 1.11961 1.11110 1.19255 0.79331 0.83858 0.85622 1.90758 1.52448 1.83287 1.15570 1.20476 0.78224 0.85949 0.86415 1.90737 1.48759 1.83679 1.15307 1.43160 1.63564 1.09325 1.12505 1.17440 0.94646 0.83206 0.96219 1.20848 1.01343 0.99035 1.00110 1.20954 0.97525 0.89778 0.98252 1.20562 1.02602 1.00104 0.99201 1.19599 0.92885 0.85980 0.93183 1.83974 1.61595 1.27093 1.40177 1.21774 1.29014 0.95781 1.02561 0.88271 1.26533 0.99210 0.93586 1.02356 1.70170 1.45193 0.98734 1.41283 0.84630 0.77451 0.79086 0.75345 1.18907 1.19396 1.17790 1.20841 1.08665 0.91040 1.07352 0.90040 0.92960 0.95406 0.92830 0.91975 0.92433 0.90407 0.87589 0.85213 0.90045 0.87827 0.73761 0.84768 0.82048 0.85730 0.91724 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.20 71.98 0.59 -1.51 16 2 C -0.10 -1.52 2.65 -10.79 -0.03 -1.54 16 3 C -0.14 -1.17 9.17 71.98 0.66 -0.51 16 4 C 0.13 1.69 3.84 41.88 0.16 1.85 16 5 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 6 C -0.13 -0.94 7.67 31.01 0.24 -0.70 16 7 C 0.10 1.30 7.51 83.18 0.63 1.93 16 8 N -0.62 -12.46 3.00 -834.85 -2.51 -14.96 16 9 C 0.54 14.82 7.58 87.24 0.66 15.48 16 10 O -0.54 -17.15 16.01 -3.30 -0.05 -17.20 16 11 C 0.51 15.74 7.61 87.24 0.66 16.41 16 12 O -0.51 -16.78 13.11 -3.33 -0.04 -16.83 16 13 N -0.64 -21.14 5.32 -304.89 -1.62 -22.76 16 14 C 0.18 6.87 6.25 38.20 0.24 7.11 16 15 C -0.19 -6.88 8.65 22.44 0.19 -6.69 16 16 C -0.05 -1.62 10.03 22.23 0.22 -1.39 16 17 C -0.21 -8.69 9.99 22.42 0.22 -8.47 16 18 C 0.14 6.75 6.64 22.56 0.15 6.90 16 19 O -0.22 -13.30 9.76 -22.76 -0.22 -13.52 16 20 C -0.42 -24.16 9.49 67.92 0.64 -23.52 16 21 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 22 C -0.02 -1.06 5.49 84.83 0.47 -0.60 16 23 N -0.92 -55.96 13.67 21.61 0.30 -55.66 16 24 Si 1.02 43.08 29.55 68.60 2.03 45.11 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 28 C -0.26 -11.57 9.08 22.52 0.20 -11.36 16 29 H 0.08 0.80 6.46 -2.39 -0.02 0.79 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.03 0.56 7.20 -2.39 -0.02 0.54 16 32 H 0.05 1.15 7.31 -2.39 -0.02 1.13 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.11 0.75 5.73 -2.38 -0.01 0.74 16 37 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.08 1.29 7.60 -2.39 -0.02 1.27 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.42 12.95 8.30 -92.70 -0.77 12.18 16 41 H 0.13 4.41 6.51 -2.91 -0.02 4.39 16 42 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.13 5.67 5.64 -2.91 -0.02 5.66 16 Total: -1.00 -75.94 372.95 4.06 -71.88 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.27 Total: 30.56 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: 5.92 Total: -6.61 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -3.83 Total: -93.39 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.32 Total: -47.55 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.94 4.06 -71.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785318205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.132 kcal (2) G-P(sol) polarization free energy of solvation -75.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds