Wall clock time and date at job start Tue Mar 31 2020 17:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.46596 * 65.00399 * 3 2 1 14 14 C 1.34232 * 117.00036 * 269.99777 * 13 3 2 15 15 O 1.20826 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.09004 * 110.85326 * 303.79243 * 16 14 13 18 18 C 1.54624 * 110.96808 * 67.61925 * 16 14 13 19 19 C 1.51283 * 104.19336 * 93.32586 * 18 16 14 20 20 O 1.21287 * 124.94047 * 196.29046 * 19 18 16 21 21 N 1.34418 * 110.11731 * 16.24555 * 19 18 16 22 22 C 1.46505 * 124.35103 * 180.43085 * 21 19 18 23 23 C 1.50693 * 109.47155 * 269.97975 * 22 21 19 24 24 C 1.38230 * 119.62104 * 94.99939 * 23 22 21 25 25 C 1.38620 * 119.16557 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.41895 * 0.02562 * 25 24 23 27 27 C 1.38180 * 119.16433 * 0.02562 * 26 25 24 28 28 N 1.31853 * 119.62142 * 274.72466 * 23 22 21 29 29 C 1.46761 * 111.30013 * 0.41430 * 21 19 18 30 30 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 33 33 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 34 34 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.48646 * 211.99407 * 18 16 14 37 37 H 1.08997 * 110.49096 * 334.64610 * 18 16 14 38 38 H 1.09001 * 109.46318 * 29.97901 * 22 21 19 39 39 H 1.08994 * 109.47094 * 149.97707 * 22 21 19 40 40 H 1.08003 * 120.41982 * 359.97438 * 24 23 22 41 41 H 1.07999 * 120.79244 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.41700 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.61915 * 180.02562 * 27 26 25 44 44 H 1.09006 * 110.24204 * 223.98402 * 29 21 19 45 45 H 1.09002 * 110.32169 * 102.02064 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7253 1.2561 15 8 -0.2193 2.7370 0.2658 16 6 0.0075 3.4224 2.5087 17 1 -0.0151 2.7316 3.3516 18 6 0.8950 4.6493 2.8213 19 6 0.1736 5.8058 2.1651 20 8 0.6660 6.8896 1.9324 21 7 -1.0921 5.4573 1.8765 22 6 -2.0649 6.3396 1.2272 23 6 -2.8190 7.1146 2.2768 24 6 -2.3942 8.3826 2.6267 25 6 -3.0952 9.0873 3.5929 26 6 -4.2021 8.4874 4.1742 27 6 -4.5667 7.2159 3.7742 28 7 -3.8797 6.5776 2.8469 29 6 -1.3742 4.0793 2.2951 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.8287 -0.0519 -2.9548 36 1 0.9651 4.8051 3.8979 37 1 1.8870 4.5230 2.3877 38 1 -1.5428 7.0334 0.5683 39 1 -2.7651 5.7417 0.6440 40 1 -1.5270 8.8189 2.1533 41 1 -2.7862 10.0796 3.8866 42 1 -4.7716 9.0070 4.9306 43 1 -5.4278 6.7419 4.2218 44 1 -1.9253 3.5536 1.5152 45 1 -1.9419 4.0750 3.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787079250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:25 Heat of formation + Delta-G solvation = -86.154988 kcal Electronic energy + Delta-G solvation = -28630.836177 eV Core-core repulsion = 24613.383872 eV Total energy + Delta-G solvation = -4017.452305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00176 -40.22899 -39.19631 -36.55319 -35.61014 -34.02873 -33.47510 -32.65386 -31.44988 -31.02351 -27.79018 -27.42810 -26.87462 -24.08207 -23.74060 -22.90876 -22.39499 -20.53370 -19.56608 -19.38727 -17.62536 -17.24381 -16.84595 -16.60578 -16.45218 -16.07360 -15.72031 -15.41545 -15.02802 -14.86348 -14.39096 -14.22316 -13.77466 -13.51502 -13.38049 -13.13238 -13.05026 -12.84016 -12.68895 -12.17453 -12.10216 -11.98369 -11.71706 -11.59248 -11.42281 -11.20829 -11.17951 -10.98033 -10.66403 -10.29948 -10.16614 -9.88722 -9.83065 -9.76424 -9.64255 -9.39177 -9.30259 -8.84795 -8.80313 -8.47267 -6.20203 -4.27377 0.76530 1.00731 2.57494 2.84676 2.90729 3.24128 3.29517 3.32683 3.49882 3.65302 4.00243 4.27204 4.31293 4.36317 4.49003 4.56889 4.78454 4.80433 4.86403 5.11761 5.14395 5.19692 5.26148 5.42713 5.49051 5.52200 5.52669 5.63895 5.82772 5.86075 5.89841 5.91241 6.19316 6.25638 6.38343 6.41191 6.42683 6.82946 6.92378 7.04382 7.13034 7.21267 7.59463 7.70826 7.71735 7.90835 8.12856 8.13788 8.57489 8.85158 9.38085 10.86554 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002694 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.643118 B =10389.188678 C =11077.288922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.458 3.542 15 O -0.508 6.508 16 C -0.101 4.101 17 H 0.130 0.870 18 C -0.143 4.143 19 C 0.520 3.480 20 O -0.529 6.529 21 N -0.607 5.607 22 C 0.179 3.821 23 C 0.108 3.892 24 C -0.149 4.149 25 C -0.078 4.078 26 C -0.173 4.173 27 C 0.096 3.904 28 N -0.471 5.471 29 C 0.119 3.881 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.100 0.900 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.431 11.706 13.091 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.300 3.700 15 O -0.397 6.397 16 C -0.121 4.121 17 H 0.147 0.853 18 C -0.183 4.183 19 C 0.308 3.692 20 O -0.406 6.406 21 N -0.340 5.340 22 C 0.056 3.944 23 C -0.031 4.031 24 C -0.170 4.170 25 C -0.104 4.104 26 C -0.193 4.193 27 C -0.062 4.062 28 N -0.181 5.181 29 C -0.003 4.003 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.173 0.827 44 H 0.118 0.882 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.617 11.353 12.143 22.136 hybrid contribution 1.016 0.714 0.139 1.249 sum -13.601 12.067 12.282 21.942 Atomic orbital electron populations 1.21854 0.98349 0.99042 1.00687 1.22022 0.92644 0.99303 1.03410 1.20709 0.95069 0.88748 0.78489 0.93518 1.21030 0.89636 1.39152 1.06146 0.91303 1.24878 0.99245 0.94758 0.95035 1.69883 1.35411 1.37883 1.09375 0.86291 0.83897 0.78697 0.77380 1.20345 1.20979 1.19584 1.86461 1.33834 1.62188 1.44276 1.22775 0.81246 0.77049 0.88904 1.90618 1.55474 1.58236 1.35373 1.21965 0.95541 0.97397 0.97211 0.85253 1.22332 1.01089 0.91453 1.03468 1.20919 0.81888 0.88720 0.77657 1.90700 1.70392 1.24840 1.54651 1.48084 1.11493 1.14177 1.60261 1.20141 0.90276 0.92834 0.91168 1.21696 0.92293 0.92318 0.96795 1.22128 1.00787 0.95667 0.98379 1.21622 0.94177 0.99988 0.94627 1.22170 0.98388 0.97166 1.01602 1.22762 0.98258 0.91975 0.93194 1.67502 1.06048 1.36490 1.08042 1.22048 0.95412 0.80977 1.01912 0.92826 0.94790 0.94975 0.87348 0.93924 0.92368 0.86633 0.86356 0.88232 0.88146 0.84331 0.84805 0.84861 0.82710 0.88151 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.57 37.16 0.32 -2.66 16 2 C -0.14 -3.27 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.73 2.25 -27.88 -0.06 5.67 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.34 8.89 -34.44 -0.31 -14.64 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.82 11.30 55.43 0.63 -24.19 16 9 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 O -0.35 -7.85 9.79 -39.26 -0.38 -8.24 16 14 C 0.46 8.73 5.65 36.01 0.20 8.93 16 15 O -0.51 -10.85 12.67 -18.75 -0.24 -11.09 16 16 C -0.10 -1.34 3.66 -90.14 -0.33 -1.67 16 17 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.14 -1.88 6.40 -26.74 -0.17 -2.05 16 19 C 0.52 7.97 8.02 -10.86 -0.09 7.88 16 20 O -0.53 -9.59 17.59 5.55 0.10 -9.49 16 21 N -0.61 -8.16 2.92 -173.79 -0.51 -8.67 16 22 C 0.18 2.15 6.24 -5.19 -0.03 2.12 16 23 C 0.11 1.23 6.36 -82.59 -0.53 0.71 16 24 C -0.15 -1.56 9.72 -39.44 -0.38 -1.94 16 25 C -0.08 -0.65 10.18 -39.28 -0.40 -1.05 16 26 C -0.17 -1.30 10.11 -39.44 -0.40 -1.70 16 27 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 28 N -0.47 -5.29 10.27 -9.48 -0.10 -5.39 16 29 C 0.12 1.44 6.68 -3.13 -0.02 1.42 16 30 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.63 6.06 -51.93 -0.31 0.31 16 33 H 0.11 2.86 5.96 -51.93 -0.31 2.55 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 1.76 7.89 -51.93 -0.41 1.35 16 38 H 0.10 1.20 7.83 -51.93 -0.41 0.79 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 43 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.10 1.32 7.02 -51.93 -0.36 0.96 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -33.04 377.02 -8.83 -41.87 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.35 Total: 3.75 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.63 Total: -0.15 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.02 Total: -38.25 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.52 Total: -28.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.04 -8.83 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.287 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds