Wall clock time and date at job start Tue Mar 31 2020 17:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 O 1.45200 * 109.46596 * 65.00399 * 3 2 1 14 14 C 1.34232 * 117.00036 * 269.99777 * 13 3 2 15 15 O 1.20826 * 120.00041 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.09004 * 110.85326 * 303.79243 * 16 14 13 18 18 C 1.54624 * 110.96808 * 67.61925 * 16 14 13 19 19 C 1.51283 * 104.19336 * 93.32586 * 18 16 14 20 20 O 1.21287 * 124.94047 * 196.29046 * 19 18 16 21 21 N 1.34418 * 110.11731 * 16.24555 * 19 18 16 22 22 C 1.46505 * 124.35103 * 180.43085 * 21 19 18 23 23 C 1.50693 * 109.47155 * 269.97975 * 22 21 19 24 24 C 1.38230 * 119.62104 * 94.99939 * 23 22 21 25 25 C 1.38620 * 119.16557 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.41895 * 0.02562 * 25 24 23 27 27 C 1.38180 * 119.16433 * 0.02562 * 26 25 24 28 28 N 1.31853 * 119.62142 * 274.72466 * 23 22 21 29 29 C 1.46761 * 111.30013 * 0.41430 * 21 19 18 30 30 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 33 33 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 34 34 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.48646 * 211.99407 * 18 16 14 37 37 H 1.08997 * 110.49096 * 334.64610 * 18 16 14 38 38 H 1.09001 * 109.46318 * 29.97901 * 22 21 19 39 39 H 1.08994 * 109.47094 * 149.97707 * 22 21 19 40 40 H 1.08003 * 120.41982 * 359.97438 * 24 23 22 41 41 H 1.07999 * 120.79244 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.41700 * 179.97438 * 26 25 24 43 43 H 1.08004 * 119.61915 * 180.02562 * 27 26 25 44 44 H 1.09006 * 110.24204 * 223.98402 * 29 21 19 45 45 H 1.09002 * 110.32169 * 102.02064 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 8 1.6559 2.0916 1.2408 14 6 0.4727 2.7253 1.2561 15 8 -0.2193 2.7370 0.2658 16 6 0.0075 3.4224 2.5087 17 1 -0.0151 2.7316 3.3516 18 6 0.8950 4.6493 2.8213 19 6 0.1736 5.8058 2.1651 20 8 0.6660 6.8896 1.9324 21 7 -1.0921 5.4573 1.8765 22 6 -2.0649 6.3396 1.2272 23 6 -2.8190 7.1146 2.2768 24 6 -2.3942 8.3826 2.6267 25 6 -3.0952 9.0873 3.5929 26 6 -4.2021 8.4874 4.1742 27 6 -4.5667 7.2159 3.7742 28 7 -3.8797 6.5776 2.8469 29 6 -1.3742 4.0793 2.2951 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8898 35 1 3.8287 -0.0519 -2.9548 36 1 0.9651 4.8051 3.8979 37 1 1.8870 4.5230 2.3877 38 1 -1.5428 7.0334 0.5683 39 1 -2.7651 5.7417 0.6440 40 1 -1.5270 8.8189 2.1533 41 1 -2.7862 10.0796 3.8866 42 1 -4.7716 9.0070 4.9306 43 1 -5.4278 6.7419 4.2218 44 1 -1.9253 3.5536 1.5152 45 1 -1.9419 4.0750 3.2256 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787079250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:25 Heat of formation + Delta-G solvation = -105.733210 kcal Electronic energy + Delta-G solvation = -28631.685152 eV Core-core repulsion = 24613.383872 eV Total energy + Delta-G solvation = -4018.301281 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.18211 -41.18913 -40.55380 -38.00468 -37.12708 -35.53627 -34.88902 -33.38660 -33.29653 -31.96355 -29.40653 -28.79044 -27.90806 -25.64538 -24.60674 -24.37639 -23.21572 -22.18225 -21.09929 -20.60992 -19.12202 -18.51147 -18.17809 -17.84329 -17.60306 -17.15033 -16.93775 -16.72252 -16.51526 -16.10826 -15.84528 -15.13354 -14.96009 -14.79478 -14.60647 -14.39722 -14.14792 -14.11505 -13.82367 -13.51756 -13.35422 -13.32587 -13.13204 -13.04895 -12.94064 -12.78468 -12.66672 -12.52722 -12.43230 -12.15529 -11.73491 -11.42905 -11.19122 -11.03813 -10.83433 -10.81435 -10.53091 -10.51050 -10.04219 -9.83675 -8.27534 -6.43752 0.05597 0.33011 1.32601 1.40575 1.42311 1.42689 1.53665 1.89310 2.01260 2.40688 2.90960 3.02328 3.18995 3.20568 3.32557 3.67871 3.72082 3.92029 4.00530 4.11422 4.21152 4.30163 4.36722 4.40581 4.43507 4.43687 4.55107 4.57883 4.63860 4.68156 4.78166 4.79782 4.82680 4.86444 5.12470 5.18964 5.24229 5.25836 5.35151 5.43098 5.52558 5.69833 5.75500 5.96520 6.00683 6.15343 6.61347 6.97875 7.00100 7.00368 7.28056 8.78948 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022419 B = 0.002694 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.643118 B =10389.188678 C =11077.288922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.003 0.997 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.977 3.023 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.268 1.268 13 O -0.358 6.358 14 C 0.450 3.550 15 O -0.535 6.535 16 C -0.088 4.088 17 H 0.175 0.825 18 C -0.137 4.137 19 C 0.508 3.492 20 O -0.569 6.569 21 N -0.606 5.606 22 C 0.176 3.824 23 C 0.093 3.907 24 C -0.166 4.166 25 C -0.080 4.080 26 C -0.162 4.162 27 C 0.088 3.912 28 N -0.492 5.492 29 C 0.124 3.876 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.270 0.730 36 H 0.158 0.842 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.183 0.817 44 H 0.089 0.911 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.450 11.865 15.998 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.192 1.192 13 O -0.275 6.275 14 C 0.294 3.706 15 O -0.426 6.426 16 C -0.107 4.107 17 H 0.193 0.807 18 C -0.177 4.177 19 C 0.297 3.703 20 O -0.448 6.448 21 N -0.338 5.338 22 C 0.053 3.947 23 C -0.045 4.045 24 C -0.187 4.187 25 C -0.106 4.106 26 C -0.182 4.182 27 C -0.070 4.070 28 N -0.202 5.202 29 C 0.002 3.998 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.176 0.824 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.145 0.855 41 H 0.176 0.824 42 H 0.186 0.814 43 H 0.200 0.800 44 H 0.107 0.893 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.673 11.499 15.060 24.590 hybrid contribution 1.198 0.743 -0.760 1.601 sum -14.475 12.242 14.300 23.746 Atomic orbital electron populations 1.21705 0.95988 1.00645 1.00270 1.21852 0.94706 0.97842 1.02330 1.20338 0.94329 0.89388 0.78601 0.97924 1.21341 0.90752 1.39836 1.06659 0.91631 1.25764 1.04002 0.94038 0.94461 1.70010 1.37320 1.38134 1.09761 0.85270 0.78096 0.79124 0.77486 1.19013 1.20527 1.19206 1.86444 1.35862 1.62862 1.42308 1.23979 0.79760 0.76208 0.90684 1.90612 1.55874 1.59015 1.37090 1.22141 0.95678 0.97641 0.95201 0.80737 1.22375 0.99488 0.90139 1.05664 1.21366 0.82529 0.88826 0.77622 1.90671 1.71244 1.26478 1.56444 1.48233 1.11273 1.14818 1.59480 1.20156 0.90070 0.92728 0.91708 1.21435 0.93026 0.92718 0.97353 1.22147 1.01122 0.95841 0.99542 1.21959 0.94083 1.00860 0.93677 1.22555 0.97685 0.96623 1.01328 1.23319 0.98585 0.92642 0.92431 1.67465 1.06248 1.37416 1.09097 1.22174 0.94781 0.79784 1.03103 0.94855 0.92071 0.93718 0.89937 0.93287 0.92121 0.82402 0.88402 0.89391 0.87932 0.85502 0.82447 0.81403 0.80009 0.89271 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 8.57 71.98 0.62 -4.76 16 2 C -0.13 -6.33 5.49 30.60 0.17 -6.16 16 3 C 0.23 12.10 2.25 29.85 0.07 12.16 16 4 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 5 C -0.55 -30.91 8.89 25.60 0.23 -30.68 16 6 H 0.07 3.63 7.81 -2.91 -0.02 3.61 16 7 C 0.02 0.95 5.30 84.65 0.45 1.39 16 8 N -0.91 -52.44 11.30 21.45 0.24 -52.20 16 9 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 O -0.36 -16.21 9.79 -51.44 -0.50 -16.72 16 14 C 0.45 17.11 5.65 71.24 0.40 17.52 16 15 O -0.54 -23.49 12.67 21.96 0.28 -23.22 16 16 C -0.09 -2.13 3.66 -10.48 -0.04 -2.17 16 17 H 0.18 2.75 8.14 -2.39 -0.02 2.73 16 18 C -0.14 -3.40 6.40 30.59 0.20 -3.20 16 19 C 0.51 15.61 8.02 87.90 0.71 16.32 16 20 O -0.57 -21.35 17.59 -3.05 -0.05 -21.41 16 21 N -0.61 -16.19 2.92 -822.32 -2.40 -18.59 16 22 C 0.18 4.40 6.24 85.63 0.53 4.93 16 23 C 0.09 2.10 6.36 42.55 0.27 2.37 16 24 C -0.17 -3.44 9.72 22.36 0.22 -3.23 16 25 C -0.08 -1.18 10.18 22.47 0.23 -0.95 16 26 C -0.16 -1.91 10.11 22.36 0.23 -1.68 16 27 C 0.09 1.29 11.18 84.67 0.95 2.24 16 28 N -0.49 -10.34 10.27 -183.89 -1.89 -12.23 16 29 C 0.12 2.77 6.68 86.83 0.58 3.35 16 30 H 0.03 1.49 7.80 -2.39 -0.02 1.48 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.72 6.06 -2.39 -0.01 1.70 16 33 H 0.08 4.48 5.96 -2.39 -0.01 4.47 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.16 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.10 2.90 7.89 -2.39 -0.02 2.89 16 38 H 0.09 2.32 7.83 -2.39 -0.02 2.31 16 39 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.09 2.27 7.02 -2.38 -0.02 2.25 16 45 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.78 377.02 4.50 -71.29 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 1.00 Total: 20.41 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.80 Total: 7.45 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -4.04 Total: -83.02 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -0.28 Total: -61.34 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -75.78 4.50 -71.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.447 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds