Wall clock time and date at job start Tue Mar 31 2020 17:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46951 * 2 1 4 4 H 1.08999 * 109.46808 * 55.00609 * 3 2 1 5 5 C 1.50704 * 109.46715 * 174.99928 * 3 2 1 6 6 H 1.08000 * 119.99428 * 120.00491 * 5 3 2 7 7 C 1.37874 * 120.00278 * 299.99899 * 5 3 2 8 8 N 1.31516 * 120.00232 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99940 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46864 * 89.99852 * 9 7 5 11 11 H 1.48500 * 109.46843 * 209.99615 * 9 7 5 12 12 H 1.48496 * 109.46994 * 329.99762 * 9 7 5 13 13 O 1.45192 * 109.47128 * 295.00213 * 3 2 1 14 14 C 1.34227 * 117.00481 * 90.00360 * 13 3 2 15 15 O 1.20830 * 119.99578 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00241 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.88962 * 56.18739 * 16 14 13 18 18 C 1.54631 * 110.97036 * 292.37210 * 16 14 13 19 19 C 1.51279 * 104.25730 * 266.46313 * 18 16 14 20 20 O 1.21286 * 124.94031 * 164.00702 * 19 18 16 21 21 N 1.34411 * 110.11814 * 344.14379 * 19 18 16 22 22 C 1.46499 * 124.35484 * 179.43373 * 21 19 18 23 23 C 1.50697 * 109.47368 * 269.70268 * 22 21 19 24 24 C 1.38225 * 119.61481 * 94.99717 * 23 22 21 25 25 C 1.38633 * 119.15790 * 179.97438 * 24 23 22 26 26 C 1.38664 * 118.42441 * 359.97438 * 25 24 23 27 27 C 1.38191 * 119.16255 * 0.05521 * 26 25 24 28 28 N 1.31854 * 119.62075 * 275.02081 * 23 22 21 29 29 C 1.46768 * 111.29796 * 359.17405 * 21 19 18 30 30 H 1.09003 * 109.46808 * 59.99510 * 1 2 3 31 31 H 1.09002 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46826 * 299.99613 * 1 2 3 33 33 H 1.09001 * 109.47140 * 240.00117 * 2 1 3 34 34 H 1.08999 * 109.47364 * 120.00038 * 2 1 3 35 35 H 0.96999 * 120.00113 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.48364 * 25.36587 * 18 16 14 37 37 H 1.09000 * 110.48108 * 147.86932 * 18 16 14 38 38 H 1.09003 * 109.47384 * 149.69835 * 22 21 19 39 39 H 1.09000 * 109.46654 * 29.70657 * 22 21 19 40 40 H 1.07995 * 120.42209 * 359.72823 * 24 23 22 41 41 H 1.08004 * 120.79144 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.42543 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.62032 * 179.97438 * 27 26 25 44 44 H 1.08999 * 110.24826 * 136.28584 * 29 21 19 45 45 H 1.09007 * 110.24046 * 258.19004 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0964 0.1089 2.5701 10 1 2.8756 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 8 1.6558 2.0917 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2192 2.7371 -0.2654 16 6 0.0075 3.4226 -2.5083 17 1 -0.0150 2.7325 -3.3517 18 6 0.8949 4.6498 -2.8208 19 6 0.1719 5.8080 -2.1695 20 8 0.6622 6.8939 -1.9429 21 7 -1.0921 5.4576 -1.8758 22 6 -2.0650 6.3399 -1.2267 23 6 -1.9784 6.1698 0.2681 24 6 -1.1930 7.0325 1.0094 25 6 -1.1207 6.8677 2.3840 26 6 -1.8446 5.8371 2.9643 27 6 -2.6079 5.0136 2.1586 28 7 -2.6523 5.1995 0.8537 29 6 -1.3742 4.0795 -2.2945 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8771 0.4819 2.1129 36 1 1.8870 4.5233 -2.3873 37 1 0.9669 4.8041 -3.8974 38 1 -3.0694 6.0838 -1.5640 39 1 -1.8471 7.3755 -1.4878 40 1 -0.6396 7.8223 0.5235 41 1 -0.5149 7.5263 2.9887 42 1 -1.8121 5.6796 4.0322 43 1 -3.1743 4.2084 2.6027 44 1 -1.9254 3.5537 -1.5148 45 1 -1.9427 4.0768 -3.2246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787079256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:36 Heat of formation + Delta-G solvation = -75.658578 kcal Electronic energy + Delta-G solvation = -29695.989254 eV Core-core repulsion = 25678.992107 eV Total energy + Delta-G solvation = -4016.997147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.01914 -40.05396 -39.31934 -36.67222 -35.75847 -34.02322 -33.52375 -32.38161 -31.95632 -30.97492 -28.01548 -27.69573 -26.90005 -24.07426 -23.49514 -22.71315 -22.26327 -20.95257 -19.70088 -19.48794 -17.81381 -17.22683 -16.68072 -16.60681 -16.38515 -16.27123 -15.69069 -15.56442 -15.09742 -14.98091 -14.45012 -14.05217 -13.65545 -13.53448 -13.32603 -13.25847 -13.01753 -12.98404 -12.76294 -12.28804 -12.14823 -12.04642 -11.90102 -11.77593 -11.73310 -11.48627 -11.36451 -11.25627 -10.79012 -10.09165 -9.94991 -9.90992 -9.80629 -9.66021 -9.55594 -9.51802 -9.11672 -9.07099 -8.78102 -8.68994 -6.26121 -4.28545 1.03304 1.30221 2.53636 2.71160 2.93121 3.14383 3.26998 3.28438 3.31723 3.89645 4.16771 4.22637 4.25638 4.31517 4.64330 4.73503 4.85146 4.99853 5.03084 5.07194 5.10712 5.25170 5.30046 5.37119 5.42401 5.55432 5.59514 5.72906 5.74543 5.77517 5.83050 5.87718 5.95502 6.09828 6.17757 6.36117 6.39710 6.51644 6.62034 6.68083 6.68710 7.00838 7.02210 7.32681 7.48726 7.98914 8.10945 8.18350 8.54058 8.81161 9.30782 10.85881 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.004502 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.887695 B = 6217.890218 C = 7079.923482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.199 3.801 4 H 0.044 0.956 5 C -0.526 4.526 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.262 1.262 13 O -0.338 6.338 14 C 0.455 3.545 15 O -0.501 6.501 16 C -0.100 4.100 17 H 0.132 0.868 18 C -0.145 4.145 19 C 0.520 3.480 20 O -0.528 6.528 21 N -0.609 5.609 22 C 0.182 3.818 23 C 0.103 3.897 24 C -0.152 4.152 25 C -0.078 4.078 26 C -0.169 4.169 27 C 0.103 3.897 28 N -0.463 5.463 29 C 0.114 3.886 30 H 0.045 0.955 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.269 0.731 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 8.254 -5.172 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.146 3.854 4 H 0.062 0.938 5 C -0.563 4.563 6 H 0.105 0.895 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.186 1.186 13 O -0.253 6.253 14 C 0.297 3.703 15 O -0.390 6.390 16 C -0.120 4.120 17 H 0.149 0.851 18 C -0.185 4.185 19 C 0.308 3.692 20 O -0.404 6.404 21 N -0.342 5.342 22 C 0.059 3.941 23 C -0.036 4.036 24 C -0.172 4.172 25 C -0.104 4.104 26 C -0.189 4.189 27 C -0.054 4.054 28 N -0.172 5.172 29 C -0.009 4.009 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.121 0.879 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.876 8.247 -5.108 20.339 hybrid contribution 0.210 -0.230 1.622 1.652 sum -17.666 8.018 -3.486 19.711 Atomic orbital electron populations 1.21879 0.96911 0.99967 1.01717 1.22362 0.94387 0.99569 1.02222 1.20959 0.96312 0.88014 0.80158 0.93809 1.20790 0.87712 1.39939 1.07899 0.89462 1.24723 0.94921 0.95283 0.97315 1.69833 1.08463 1.44233 1.29803 0.87014 0.80990 0.80127 0.81393 1.19887 1.21672 1.18636 1.86478 1.34131 1.62231 1.42493 1.22926 0.81021 0.77100 0.89287 1.90653 1.55310 1.57831 1.35174 1.21946 0.95699 0.97493 0.96849 0.85052 1.22349 1.01016 0.91301 1.03795 1.20915 0.81844 0.88785 0.77705 1.90709 1.70044 1.24669 1.54980 1.48140 1.12396 1.14625 1.59080 1.20116 0.93174 0.94802 0.85974 1.21517 0.93898 0.91496 0.96700 1.22028 0.99300 1.01158 0.94717 1.21580 0.96829 0.97025 0.94944 1.22157 0.98519 0.96685 1.01565 1.22671 0.96255 0.97484 0.89020 1.67408 1.20302 1.17515 1.12007 1.22105 0.95524 0.81436 1.01786 0.93582 0.93961 0.92637 0.91183 0.91858 0.92043 0.86376 0.86327 0.88520 0.88398 0.84712 0.84913 0.84926 0.82901 0.87851 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.57 37.16 0.32 -2.48 16 2 C -0.15 -3.27 5.15 -26.73 -0.14 -3.41 16 3 C 0.20 4.90 1.84 -27.88 -0.05 4.85 16 4 H 0.04 1.17 6.21 -51.93 -0.32 0.84 16 5 C -0.53 -14.91 9.48 -34.44 -0.33 -15.23 16 6 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.22 16 8 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 9 Si 0.88 21.58 24.41 -169.99 -4.15 17.43 16 10 H -0.27 -6.41 6.83 56.52 0.39 -6.02 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 O -0.34 -7.31 9.79 -39.25 -0.38 -7.69 16 14 C 0.46 8.32 5.65 36.00 0.20 8.52 16 15 O -0.50 -10.26 12.67 -18.75 -0.24 -10.50 16 16 C -0.10 -1.25 3.66 -90.14 -0.33 -1.58 16 17 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.14 -1.83 6.40 -26.74 -0.17 -2.00 16 19 C 0.52 7.70 8.02 -10.87 -0.09 7.62 16 20 O -0.53 -9.43 17.59 5.55 0.10 -9.33 16 21 N -0.61 -7.75 2.92 -173.78 -0.51 -8.26 16 22 C 0.18 2.08 6.24 -5.20 -0.03 2.05 16 23 C 0.10 1.41 6.36 -82.59 -0.53 0.89 16 24 C -0.15 -2.04 9.72 -39.44 -0.38 -2.43 16 25 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 26 C -0.17 -2.05 10.11 -39.44 -0.40 -2.45 16 27 C 0.10 1.36 11.18 -17.55 -0.20 1.16 16 28 N -0.46 -6.71 10.27 -9.47 -0.10 -6.81 16 29 C 0.11 1.27 6.68 -3.12 -0.02 1.25 16 30 H 0.05 0.82 6.06 -51.93 -0.31 0.51 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.11 7.80 -51.93 -0.40 0.71 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.46 3.21 -51.93 -0.17 1.30 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 36 H 0.12 1.76 7.89 -51.93 -0.41 1.35 16 37 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.02 7.82 -51.93 -0.41 0.61 16 40 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.10 1.36 7.02 -51.93 -0.36 0.99 16 45 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -35.27 370.22 -7.78 -43.05 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.22 Total: 4.73 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.64 Total: -2.39 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.17 Total: -40.88 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.52 Total: -27.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.27 -7.78 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.610 kcal (2) G-P(sol) polarization free energy of solvation -35.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds