Wall clock time and date at job start Tue Mar 31 2020 17:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46951 * 2 1 4 4 H 1.08999 * 109.46808 * 55.00609 * 3 2 1 5 5 C 1.50704 * 109.46715 * 174.99928 * 3 2 1 6 6 H 1.08000 * 119.99428 * 120.00491 * 5 3 2 7 7 C 1.37874 * 120.00278 * 299.99899 * 5 3 2 8 8 N 1.31516 * 120.00232 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99940 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.46864 * 89.99852 * 9 7 5 11 11 H 1.48500 * 109.46843 * 209.99615 * 9 7 5 12 12 H 1.48496 * 109.46994 * 329.99762 * 9 7 5 13 13 O 1.45192 * 109.47128 * 295.00213 * 3 2 1 14 14 C 1.34227 * 117.00481 * 90.00360 * 13 3 2 15 15 O 1.20830 * 119.99578 * 359.97438 * 14 13 3 16 16 C 1.50691 * 120.00241 * 179.97438 * 14 13 3 17 17 H 1.09000 * 110.88962 * 56.18739 * 16 14 13 18 18 C 1.54631 * 110.97036 * 292.37210 * 16 14 13 19 19 C 1.51279 * 104.25730 * 266.46313 * 18 16 14 20 20 O 1.21286 * 124.94031 * 164.00702 * 19 18 16 21 21 N 1.34411 * 110.11814 * 344.14379 * 19 18 16 22 22 C 1.46499 * 124.35484 * 179.43373 * 21 19 18 23 23 C 1.50697 * 109.47368 * 269.70268 * 22 21 19 24 24 C 1.38225 * 119.61481 * 94.99717 * 23 22 21 25 25 C 1.38633 * 119.15790 * 179.97438 * 24 23 22 26 26 C 1.38664 * 118.42441 * 359.97438 * 25 24 23 27 27 C 1.38191 * 119.16255 * 0.05521 * 26 25 24 28 28 N 1.31854 * 119.62075 * 275.02081 * 23 22 21 29 29 C 1.46768 * 111.29796 * 359.17405 * 21 19 18 30 30 H 1.09003 * 109.46808 * 59.99510 * 1 2 3 31 31 H 1.09002 * 109.47136 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46826 * 299.99613 * 1 2 3 33 33 H 1.09001 * 109.47140 * 240.00117 * 2 1 3 34 34 H 1.08999 * 109.47364 * 120.00038 * 2 1 3 35 35 H 0.96999 * 120.00113 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.48364 * 25.36587 * 18 16 14 37 37 H 1.09000 * 110.48108 * 147.86932 * 18 16 14 38 38 H 1.09003 * 109.47384 * 149.69835 * 22 21 19 39 39 H 1.09000 * 109.46654 * 29.70657 * 22 21 19 40 40 H 1.07995 * 120.42209 * 359.72823 * 24 23 22 41 41 H 1.08004 * 120.79144 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.42543 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.62032 * 179.97438 * 27 26 25 44 44 H 1.08999 * 110.24826 * 136.28584 * 29 21 19 45 45 H 1.09007 * 110.24046 * 258.19004 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8804 1.3363 9 14 3.0964 0.1089 2.5701 10 1 2.8756 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 8 1.6558 2.0917 -1.2406 14 6 0.4727 2.7255 -1.2559 15 8 -0.2192 2.7371 -0.2654 16 6 0.0075 3.4226 -2.5083 17 1 -0.0150 2.7325 -3.3517 18 6 0.8949 4.6498 -2.8208 19 6 0.1719 5.8080 -2.1695 20 8 0.6622 6.8939 -1.9429 21 7 -1.0921 5.4576 -1.8758 22 6 -2.0650 6.3399 -1.2267 23 6 -1.9784 6.1698 0.2681 24 6 -1.1930 7.0325 1.0094 25 6 -1.1207 6.8677 2.3840 26 6 -1.8446 5.8371 2.9643 27 6 -2.6079 5.0136 2.1586 28 7 -2.6523 5.1995 0.8537 29 6 -1.3742 4.0795 -2.2945 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 5.8771 0.4819 2.1129 36 1 1.8870 4.5233 -2.3873 37 1 0.9669 4.8041 -3.8974 38 1 -3.0694 6.0838 -1.5640 39 1 -1.8471 7.3755 -1.4878 40 1 -0.6396 7.8223 0.5235 41 1 -0.5149 7.5263 2.9887 42 1 -1.8121 5.6796 4.0322 43 1 -3.1743 4.2084 2.6027 44 1 -1.9254 3.5537 -1.5148 45 1 -1.9427 4.0768 -3.2246 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787079256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:34 Heat of formation + Delta-G solvation = -98.993077 kcal Electronic energy + Delta-G solvation = -29697.001113 eV Core-core repulsion = 25678.992107 eV Total energy + Delta-G solvation = -4018.009007 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.20225 -41.21675 -40.59332 -38.09563 -37.15229 -35.58177 -34.87273 -33.91032 -33.36844 -31.99518 -29.84130 -28.78382 -27.90750 -25.50357 -24.54753 -24.37177 -23.25226 -22.52006 -21.19569 -20.57857 -19.39327 -18.53589 -18.24702 -18.01950 -17.65076 -17.25664 -17.04056 -16.85923 -16.48318 -16.10689 -15.87776 -15.38593 -15.11938 -14.83106 -14.56040 -14.50302 -14.21505 -14.20984 -13.96311 -13.82253 -13.64368 -13.37443 -13.18852 -13.12842 -13.01613 -12.85765 -12.71464 -12.58593 -12.46179 -12.05023 -11.59105 -11.53495 -11.22260 -11.10897 -11.02011 -10.84338 -10.75226 -10.56437 -10.06855 -9.78335 -8.47682 -6.55770 0.04431 0.30128 1.18098 1.26013 1.27538 1.35254 1.42866 1.86502 2.01015 2.15395 2.84614 2.89589 3.20002 3.27296 3.34041 3.64750 3.72852 3.82681 3.94773 4.08310 4.09320 4.17698 4.18516 4.22696 4.37742 4.38687 4.42007 4.56497 4.58718 4.66565 4.70582 4.76155 4.81689 4.84759 4.94464 4.96507 5.03895 5.13754 5.20498 5.32208 5.35942 5.41086 5.69016 5.72263 5.99999 6.15129 6.48703 6.90438 6.98181 7.01993 7.09882 8.68337 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.004502 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.887695 B = 6217.890218 C = 7079.923482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.206 3.794 4 H 0.020 0.980 5 C -0.540 4.540 6 H 0.046 0.954 7 C 0.031 3.969 8 N -0.930 5.930 9 Si 0.937 3.063 10 H -0.248 1.248 11 H -0.285 1.285 12 H -0.260 1.260 13 O -0.351 6.351 14 C 0.446 3.554 15 O -0.524 6.524 16 C -0.090 4.090 17 H 0.179 0.821 18 C -0.140 4.140 19 C 0.508 3.492 20 O -0.570 6.570 21 N -0.605 5.605 22 C 0.179 3.821 23 C 0.088 3.912 24 C -0.171 4.171 25 C -0.088 4.088 26 C -0.173 4.173 27 C 0.085 3.915 28 N -0.480 5.480 29 C 0.117 3.883 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.275 0.725 36 H 0.088 0.912 37 H 0.164 0.836 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.086 0.914 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.284 7.079 -5.994 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.151 3.849 4 H 0.038 0.962 5 C -0.577 4.577 6 H 0.065 0.935 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.762 3.238 10 H -0.173 1.173 11 H -0.212 1.212 12 H -0.184 1.184 13 O -0.267 6.267 14 C 0.290 3.710 15 O -0.413 6.413 16 C -0.109 4.109 17 H 0.197 0.803 18 C -0.180 4.180 19 C 0.297 3.703 20 O -0.450 6.450 21 N -0.338 5.338 22 C 0.057 3.943 23 C -0.050 4.050 24 C -0.192 4.192 25 C -0.114 4.114 26 C -0.193 4.193 27 C -0.072 4.072 28 N -0.190 5.190 29 C -0.005 4.005 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.181 0.819 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.151 0.849 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.189 0.811 44 H 0.104 0.896 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.622 7.054 -5.950 22.593 hybrid contribution 1.074 0.233 1.861 2.162 sum -19.548 7.287 -4.088 21.259 Atomic orbital electron populations 1.21778 0.94167 1.01975 1.01491 1.22250 0.96760 0.97171 1.02090 1.20550 0.93657 0.89806 0.80859 0.96221 1.21014 0.89937 1.39654 1.07136 0.93545 1.25538 0.96025 0.95677 0.99607 1.69960 1.10329 1.45516 1.30975 0.86032 0.79118 0.80421 0.78232 1.17284 1.21203 1.18445 1.86468 1.36421 1.63020 1.40783 1.24142 0.79468 0.76265 0.91170 1.90644 1.55569 1.58455 1.36665 1.22198 0.96004 0.97623 0.95029 0.80349 1.22386 0.99097 0.90396 1.06106 1.21332 0.82586 0.88762 0.77640 1.90682 1.70992 1.26421 1.56862 1.48268 1.11940 1.15382 1.58164 1.20305 0.94134 0.95119 0.84737 1.21864 0.93874 0.91424 0.97869 1.22210 0.99825 1.01587 0.95537 1.21941 0.96994 0.97529 0.94931 1.22484 0.97778 0.96076 1.02924 1.23137 0.96713 0.98256 0.89067 1.67435 1.20919 1.17934 1.12719 1.22354 0.94656 0.79840 1.03645 0.92682 0.90758 0.94013 0.90516 0.92735 0.91599 0.89344 0.81892 0.85909 0.87884 0.84912 0.82924 0.82334 0.81063 0.89568 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 8.57 71.98 0.62 -4.21 16 2 C -0.15 -6.21 5.15 30.60 0.16 -6.05 16 3 C 0.21 10.21 1.84 29.85 0.05 10.27 16 4 H 0.02 1.08 6.21 -2.39 -0.01 1.06 16 5 C -0.54 -31.71 9.48 25.60 0.24 -31.47 16 6 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 7 C 0.03 1.83 5.45 84.65 0.46 2.29 16 8 N -0.93 -57.27 13.96 21.45 0.30 -56.97 16 9 Si 0.94 44.58 24.41 68.60 1.67 46.26 16 10 H -0.25 -10.78 6.83 99.48 0.68 -10.10 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.26 -12.20 6.53 99.48 0.65 -11.56 16 13 O -0.35 -15.20 9.79 -51.39 -0.50 -15.70 16 14 C 0.45 15.81 5.65 71.23 0.40 16.21 16 15 O -0.52 -21.08 12.67 21.95 0.28 -20.80 16 16 C -0.09 -1.96 3.66 -10.48 -0.04 -2.00 16 17 H 0.18 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.14 -3.28 6.40 30.59 0.20 -3.09 16 19 C 0.51 14.62 8.02 87.90 0.71 15.32 16 20 O -0.57 -20.67 17.59 -3.05 -0.05 -20.72 16 21 N -0.61 -14.27 2.92 -822.32 -2.40 -16.67 16 22 C 0.18 3.86 6.24 85.63 0.53 4.40 16 23 C 0.09 2.40 6.36 42.55 0.27 2.67 16 24 C -0.17 -4.68 9.72 22.36 0.22 -4.46 16 25 C -0.09 -2.17 10.18 22.47 0.23 -1.94 16 26 C -0.17 -4.04 10.11 22.36 0.23 -3.81 16 27 C 0.09 2.18 11.18 84.67 0.95 3.13 16 28 N -0.48 -13.58 10.27 -183.88 -1.89 -15.47 16 29 C 0.12 2.18 6.68 86.83 0.58 2.76 16 30 H 0.05 1.82 6.06 -2.39 -0.01 1.80 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.58 7.80 -2.39 -0.02 1.56 16 33 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.05 2.41 3.21 -2.39 -0.01 2.41 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.09 2.67 7.89 -2.39 -0.02 2.65 16 37 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 2.08 7.82 -2.39 -0.02 2.06 16 40 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 41 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 42 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 44 H 0.09 2.02 7.02 -2.39 -0.02 2.00 16 45 H 0.14 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -81.38 370.22 4.13 -77.25 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.92 Total: 22.81 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.80 Total: 0.01 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -3.99 Total: -89.11 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -0.28 Total: -57.22 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.67 Total: 46.26 kcal Total: -81.38 4.13 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787079256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.744 kcal (2) G-P(sol) polarization free energy of solvation -81.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds