Wall clock time and date at job start Tue Mar 31 2020 17:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 H 1.09001 * 109.47405 * 54.99913 * 3 2 1 5 5 C 1.50702 * 109.47107 * 174.99913 * 3 2 1 6 6 H 1.08005 * 119.99933 * 119.99909 * 5 3 2 7 7 C 1.37871 * 120.00184 * 299.99898 * 5 3 2 8 8 N 1.31516 * 120.00049 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00346 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46860 * 59.99761 * 9 7 5 11 11 H 1.48498 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47101 * 300.00338 * 9 7 5 13 13 O 1.45201 * 109.47072 * 294.99654 * 3 2 1 14 14 C 1.34751 * 116.99732 * 90.00087 * 13 3 2 15 15 O 1.21510 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.47443 * 120.00112 * 180.02562 * 14 13 3 17 17 C 1.39836 * 120.07704 * 0.02562 * 16 14 13 18 18 C 1.37618 * 119.91798 * 179.72361 * 17 16 14 19 19 C 1.39173 * 120.08191 * 0.25403 * 18 17 16 20 20 N 1.39402 * 119.92193 * 180.02562 * 19 18 17 21 21 C 1.47046 * 125.41286 * 89.99599 * 20 19 18 22 22 C 1.54106 * 103.86576 * 180.02562 * 21 20 19 23 23 N 1.47050 * 103.85873 * 0.02562 * 22 21 20 24 24 C 1.33952 * 125.40475 * 269.69814 * 20 19 18 25 25 O 1.21575 * 123.04661 * 359.97438 * 24 20 19 26 26 C 1.39131 * 120.15928 * 0.02562 * 19 18 17 27 27 C 1.50699 * 119.96224 * 179.97438 * 26 19 18 28 28 C 1.37662 * 120.07924 * 359.97250 * 26 19 18 29 29 H 1.08991 * 109.47359 * 60.00163 * 1 2 3 30 30 H 1.09008 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47299 * 299.99867 * 1 2 3 32 32 H 1.09002 * 109.47399 * 239.99187 * 2 1 3 33 33 H 1.09005 * 109.47502 * 119.99917 * 2 1 3 34 34 H 0.96997 * 120.00156 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.04266 * 0.02562 * 17 16 14 36 36 H 1.07999 * 119.95876 * 180.27930 * 18 17 16 37 37 H 1.08998 * 110.55188 * 298.60074 * 21 20 19 38 38 H 1.08997 * 110.54704 * 61.41028 * 21 20 19 39 39 H 1.09000 * 110.55139 * 118.59588 * 22 21 20 40 40 H 1.08997 * 110.55156 * 241.41227 * 22 21 20 41 41 H 0.97007 * 125.41062 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46794 * 89.99710 * 27 26 19 43 43 H 1.08999 * 109.47306 * 209.99922 * 27 26 19 44 44 H 1.08998 * 109.46987 * 330.00216 * 27 26 19 45 45 H 1.07998 * 120.04164 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3812 10 1 6.5005 2.2799 1.3807 11 1 6.3978 0.2168 2.6504 12 1 6.5967 0.1452 0.2343 13 8 1.6559 2.0916 -1.2407 14 6 0.4681 2.7278 -1.2561 15 8 -0.2278 2.7394 -0.2601 16 6 0.0124 3.4089 -2.4818 17 6 0.8112 3.3953 -3.6294 18 6 0.3801 4.0272 -4.7734 19 6 -0.8469 4.6839 -4.7874 20 7 -1.2806 5.3224 -5.9482 21 6 -2.0825 4.7020 -7.0132 22 6 -2.2744 5.8358 -8.0391 23 7 -1.5597 6.9745 -7.4435 24 6 -1.0378 6.6004 -6.2679 25 8 -0.3977 7.3513 -5.5576 26 6 -1.6418 4.7045 -3.6457 27 6 -2.9693 5.4174 -3.6656 28 6 -1.2170 4.0745 -2.4978 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9498 35 1 1.7632 2.8852 -3.6196 36 1 0.9945 4.0132 -5.6615 37 1 -1.5430 3.8678 -7.4617 38 1 -3.0453 4.3711 -6.6237 39 1 -1.8303 5.5644 -8.9969 40 1 -3.3325 6.0682 -8.1591 41 1 -1.4829 7.8579 -7.8368 42 1 -3.7501 4.7227 -3.9756 43 1 -3.1940 5.7950 -2.6681 44 1 -2.9242 6.2499 -4.3677 45 1 -1.8346 4.0906 -1.6120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:02 Heat of formation + Delta-G solvation = -73.787953 kcal Electronic energy + Delta-G solvation = -28381.957507 eV Core-core repulsion = 24365.041477 eV Total energy + Delta-G solvation = -4016.916030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65160 -39.90942 -38.65175 -36.62734 -35.77473 -34.46072 -33.50666 -32.77904 -31.35836 -30.39062 -29.08532 -27.43608 -26.92272 -24.69492 -23.37891 -23.06015 -21.97773 -21.43728 -20.27072 -19.34492 -18.18727 -17.35847 -17.14132 -16.89590 -16.51035 -15.78456 -15.38970 -15.26648 -15.10006 -14.56993 -14.49320 -14.19746 -14.09211 -13.68483 -13.28670 -13.23210 -12.94716 -12.83650 -12.79837 -12.62800 -12.32681 -11.96590 -11.80427 -11.47131 -11.35881 -11.17616 -11.17317 -10.93012 -10.64800 -10.52959 -10.28088 -9.80714 -9.68591 -9.65856 -9.36351 -9.09038 -8.94237 -8.80288 -8.72470 -8.43530 -6.16977 -4.24049 0.70442 1.32139 2.18204 2.82724 2.93922 3.27946 3.31314 3.33320 3.51032 3.62462 3.89428 3.93057 4.34548 4.40357 4.69276 4.76914 4.77983 4.93179 5.13939 5.15851 5.18753 5.26070 5.32547 5.36143 5.45289 5.48903 5.66391 5.78684 6.03097 6.16648 6.24555 6.31188 6.36804 6.43223 6.47694 6.50629 6.69001 6.88296 6.94280 6.97870 7.09684 7.18084 7.24709 7.62517 7.74759 7.94400 8.16484 8.29627 8.62517 8.88948 9.40992 10.89794 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002599 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.404709 B =10770.159690 C =11425.642862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.495 3.505 15 O -0.510 6.510 16 C -0.099 4.099 17 C -0.059 4.059 18 C -0.118 4.118 19 C 0.182 3.818 20 N -0.589 5.589 21 C 0.093 3.907 22 C 0.094 3.906 23 N -0.742 5.742 24 C 0.702 3.298 25 O -0.571 6.571 26 C -0.090 4.090 27 C -0.107 4.107 28 C -0.054 4.054 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.431 0.569 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.386 7.379 -21.519 26.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.339 3.661 15 O -0.402 6.402 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.137 4.137 19 C 0.092 3.908 20 N -0.325 5.325 21 C -0.030 4.030 22 C -0.031 4.031 23 N -0.405 5.405 24 C 0.403 3.597 25 O -0.446 6.446 26 C -0.092 4.092 27 C -0.163 4.163 28 C -0.073 4.073 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.166 0.834 36 H 0.149 0.851 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.273 0.727 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.155 7.561 -20.535 26.062 hybrid contribution 0.866 0.179 -0.081 0.888 sum -13.290 7.740 -20.616 25.721 Atomic orbital electron populations 1.21863 0.98379 0.99007 1.00785 1.22021 0.92638 0.99288 1.03393 1.20710 0.95037 0.88761 0.78522 0.93409 1.20998 0.89613 1.39030 1.06305 0.91338 1.24876 0.99218 0.94755 0.95051 1.69878 1.35469 1.37770 1.09465 0.86342 0.83899 0.78513 0.77444 1.19974 1.21048 1.19942 1.86534 1.33474 1.62327 1.44203 1.20833 0.81148 0.76923 0.87159 1.90784 1.55570 1.58632 1.35177 1.19552 0.96021 1.01156 0.93338 1.21450 0.99606 0.96018 0.90745 1.21247 0.95199 0.98212 0.99046 1.16969 0.93418 0.96247 0.84201 1.44041 1.57104 1.10848 1.20461 1.22508 0.96845 0.96535 0.87070 1.22368 0.98324 0.85406 0.97052 1.45057 1.58758 1.14907 1.21759 1.15853 0.79886 0.82055 0.81954 1.91021 1.44611 1.54872 1.54145 1.19959 0.97502 0.99252 0.92471 1.20676 0.92978 0.99498 1.03176 1.21055 0.94573 0.93979 0.97681 0.94933 0.94810 0.92790 0.93941 0.87295 0.92328 0.83434 0.85145 0.89473 0.89598 0.89702 0.89768 0.72714 0.91099 0.90971 0.91852 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.85 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.60 8.90 -34.44 -0.31 -14.91 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 O -0.35 -8.32 9.05 -40.63 -0.37 -8.68 16 14 C 0.50 10.65 6.34 34.48 0.22 10.87 16 15 O -0.51 -11.98 13.52 -19.27 -0.26 -12.24 16 16 C -0.10 -1.71 5.88 -104.97 -0.62 -2.33 16 17 C -0.06 -0.90 9.60 -39.21 -0.38 -1.27 16 18 C -0.12 -1.53 9.95 -39.46 -0.39 -1.92 16 19 C 0.18 2.32 5.40 -83.74 -0.45 1.87 16 20 N -0.59 -6.13 2.05 -118.24 -0.24 -6.37 16 21 C 0.09 0.51 7.61 -3.17 -0.02 0.48 16 22 C 0.09 0.33 8.06 -3.16 -0.03 0.31 16 23 N -0.74 -5.31 6.37 -64.70 -0.41 -5.72 16 24 C 0.70 8.47 7.95 -88.39 -0.70 7.76 16 25 O -0.57 -9.85 17.65 5.30 0.09 -9.75 16 26 C -0.09 -1.17 5.89 -104.50 -0.62 -1.79 16 27 C -0.11 -1.09 9.76 36.01 0.35 -0.73 16 28 C -0.05 -0.81 9.23 -39.21 -0.36 -1.17 16 29 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 30 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 32 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.15 2.19 7.60 -52.49 -0.40 1.79 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.43 2.34 8.96 -40.82 -0.37 1.97 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 44 H 0.06 0.68 6.94 -51.93 -0.36 0.32 16 45 H 0.14 2.08 7.64 -52.49 -0.40 1.67 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -35.04 374.32 -9.51 -44.54 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.27 Total: 2.61 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.29 Total: -1.68 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.03 Total: -36.58 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.53 Total: -30.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.04 -9.51 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.246 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds