Wall clock time and date at job start Tue Mar 31 2020 17:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 H 1.09001 * 109.47405 * 54.99913 * 3 2 1 5 5 C 1.50702 * 109.47107 * 174.99913 * 3 2 1 6 6 H 1.08005 * 119.99933 * 119.99909 * 5 3 2 7 7 C 1.37871 * 120.00184 * 299.99898 * 5 3 2 8 8 N 1.31516 * 120.00049 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00346 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46860 * 59.99761 * 9 7 5 11 11 H 1.48498 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47101 * 300.00338 * 9 7 5 13 13 O 1.45201 * 109.47072 * 294.99654 * 3 2 1 14 14 C 1.34751 * 116.99732 * 90.00087 * 13 3 2 15 15 O 1.21510 * 120.00159 * 359.97438 * 14 13 3 16 16 C 1.47443 * 120.00112 * 180.02562 * 14 13 3 17 17 C 1.39836 * 120.07704 * 0.02562 * 16 14 13 18 18 C 1.37618 * 119.91798 * 179.72361 * 17 16 14 19 19 C 1.39173 * 120.08191 * 0.25403 * 18 17 16 20 20 N 1.39402 * 119.92193 * 180.02562 * 19 18 17 21 21 C 1.47046 * 125.41286 * 89.99599 * 20 19 18 22 22 C 1.54106 * 103.86576 * 180.02562 * 21 20 19 23 23 N 1.47050 * 103.85873 * 0.02562 * 22 21 20 24 24 C 1.33952 * 125.40475 * 269.69814 * 20 19 18 25 25 O 1.21575 * 123.04661 * 359.97438 * 24 20 19 26 26 C 1.39131 * 120.15928 * 0.02562 * 19 18 17 27 27 C 1.50699 * 119.96224 * 179.97438 * 26 19 18 28 28 C 1.37662 * 120.07924 * 359.97250 * 26 19 18 29 29 H 1.08991 * 109.47359 * 60.00163 * 1 2 3 30 30 H 1.09008 * 109.47043 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47299 * 299.99867 * 1 2 3 32 32 H 1.09002 * 109.47399 * 239.99187 * 2 1 3 33 33 H 1.09005 * 109.47502 * 119.99917 * 2 1 3 34 34 H 0.96997 * 120.00156 * 180.02562 * 8 7 5 35 35 H 1.08002 * 120.04266 * 0.02562 * 17 16 14 36 36 H 1.07999 * 119.95876 * 180.27930 * 18 17 16 37 37 H 1.08998 * 110.55188 * 298.60074 * 21 20 19 38 38 H 1.08997 * 110.54704 * 61.41028 * 21 20 19 39 39 H 1.09000 * 110.55139 * 118.59588 * 22 21 20 40 40 H 1.08997 * 110.55156 * 241.41227 * 22 21 20 41 41 H 0.97007 * 125.41062 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46794 * 89.99710 * 27 26 19 43 43 H 1.08999 * 109.47306 * 209.99922 * 27 26 19 44 44 H 1.08998 * 109.46987 * 330.00216 * 27 26 19 45 45 H 1.07998 * 120.04164 * 180.02562 * 28 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3812 10 1 6.5005 2.2799 1.3807 11 1 6.3978 0.2168 2.6504 12 1 6.5967 0.1452 0.2343 13 8 1.6559 2.0916 -1.2407 14 6 0.4681 2.7278 -1.2561 15 8 -0.2278 2.7394 -0.2601 16 6 0.0124 3.4089 -2.4818 17 6 0.8112 3.3953 -3.6294 18 6 0.3801 4.0272 -4.7734 19 6 -0.8469 4.6839 -4.7874 20 7 -1.2806 5.3224 -5.9482 21 6 -2.0825 4.7020 -7.0132 22 6 -2.2744 5.8358 -8.0391 23 7 -1.5597 6.9745 -7.4435 24 6 -1.0378 6.6004 -6.2679 25 8 -0.3977 7.3513 -5.5576 26 6 -1.6418 4.7045 -3.6457 27 6 -2.9693 5.4174 -3.6656 28 6 -1.2170 4.0745 -2.4978 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5140 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9498 35 1 1.7632 2.8852 -3.6196 36 1 0.9945 4.0132 -5.6615 37 1 -1.5430 3.8678 -7.4617 38 1 -3.0453 4.3711 -6.6237 39 1 -1.8303 5.5644 -8.9969 40 1 -3.3325 6.0682 -8.1591 41 1 -1.4829 7.8579 -7.8368 42 1 -3.7501 4.7227 -3.9756 43 1 -3.1940 5.7950 -2.6681 44 1 -2.9242 6.2499 -4.3677 45 1 -1.8346 4.0906 -1.6120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:01 Heat of formation + Delta-G solvation = -95.510112 kcal Electronic energy + Delta-G solvation = -28382.899451 eV Core-core repulsion = 24365.041477 eV Total energy + Delta-G solvation = -4017.857974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.45076 -41.48691 -39.93014 -37.65487 -37.48292 -35.60658 -35.25474 -33.83902 -33.32698 -31.41909 -29.73914 -29.33421 -28.00588 -26.05867 -24.94070 -23.83301 -23.10985 -22.74593 -21.79252 -20.93726 -19.04525 -18.97361 -18.53448 -17.89646 -17.64829 -17.44745 -17.07655 -16.54114 -16.12714 -16.06723 -15.39083 -15.24872 -14.92789 -14.81767 -14.76898 -14.60083 -14.34516 -14.11573 -13.77867 -13.40369 -13.31891 -13.27508 -13.19254 -13.14784 -12.97793 -12.85555 -12.79398 -12.55530 -12.29394 -12.15387 -11.76984 -11.57078 -11.49939 -11.34440 -10.83779 -10.53350 -10.49215 -10.08342 -9.82860 -9.69068 -8.27616 -6.44456 -0.52662 0.21400 1.40934 1.41558 1.44925 1.50984 1.53244 1.94777 1.96495 2.40973 2.57635 2.98794 3.01926 3.55438 3.66235 3.71533 3.81421 4.07475 4.13061 4.27543 4.32439 4.37277 4.38094 4.39740 4.49452 4.61057 4.69650 4.70524 4.76954 4.82776 4.90850 4.96295 5.01998 5.08031 5.11697 5.21255 5.24501 5.29906 5.37900 5.45083 5.50486 5.66466 5.88984 5.94850 6.09466 6.17970 6.39943 6.59199 6.93505 7.26415 7.48301 8.79092 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020884 B = 0.002599 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.404709 B =10770.159690 C =11425.642862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.980 3.020 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.263 1.263 13 O -0.355 6.355 14 C 0.492 3.508 15 O -0.539 6.539 16 C -0.126 4.126 17 C -0.061 4.061 18 C -0.114 4.114 19 C 0.191 3.809 20 N -0.592 5.592 21 C 0.084 3.916 22 C 0.097 3.903 23 N -0.729 5.729 24 C 0.693 3.307 25 O -0.635 6.635 26 C -0.090 4.090 27 C -0.102 4.102 28 C -0.055 4.055 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.271 0.729 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.439 0.561 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.404 7.398 -24.717 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.197 1.197 11 H -0.201 1.201 12 H -0.187 1.187 13 O -0.272 6.272 14 C 0.339 3.661 15 O -0.431 6.431 16 C -0.128 4.128 17 C -0.080 4.080 18 C -0.133 4.133 19 C 0.100 3.900 20 N -0.327 5.327 21 C -0.037 4.037 22 C -0.027 4.027 23 N -0.391 5.391 24 C 0.394 3.606 25 O -0.515 6.515 26 C -0.092 4.092 27 C -0.158 4.158 28 C -0.074 4.074 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.171 0.829 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.282 0.718 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.231 7.565 -23.812 29.262 hybrid contribution 1.058 0.247 0.784 1.340 sum -14.173 7.812 -23.029 28.146 Atomic orbital electron populations 1.21712 0.96279 1.00672 1.00046 1.21860 0.94472 0.97836 1.02470 1.20431 0.94602 0.89405 0.78367 0.97582 1.21290 0.90425 1.40093 1.07029 0.91629 1.25786 1.04205 0.93852 0.94317 1.70002 1.37492 1.37820 1.09820 0.85278 0.77728 0.78686 0.77989 1.19654 1.20106 1.18719 1.86516 1.35057 1.62929 1.42674 1.21594 0.79946 0.76184 0.88408 1.90754 1.56011 1.59748 1.36634 1.19374 0.97806 1.03401 0.92181 1.21434 0.99290 0.96397 0.90843 1.21432 0.95550 0.97415 0.98903 1.17122 0.92952 0.94796 0.85167 1.44096 1.57363 1.10690 1.20531 1.22943 0.97117 0.97571 0.86040 1.22703 0.99840 0.83047 0.97090 1.45061 1.57625 1.16257 1.20115 1.16158 0.79710 0.82009 0.82745 1.90975 1.47562 1.56610 1.56389 1.20241 0.98762 0.98513 0.91649 1.20715 0.92020 0.99671 1.03422 1.21084 0.93765 0.94015 0.98550 0.94601 0.91790 0.94562 0.93390 0.89410 0.91979 0.83769 0.82925 0.87889 0.87805 0.87046 0.86904 0.71791 0.88284 0.90787 0.92047 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16 2 C -0.13 -6.58 5.49 30.59 0.17 -6.41 16 3 C 0.23 12.59 2.25 29.85 0.07 12.66 16 4 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 5 C -0.55 -31.90 8.90 25.60 0.23 -31.67 16 6 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.95 11.29 21.45 0.24 -52.71 16 9 Si 0.98 43.63 29.54 68.60 2.03 45.65 16 10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 13 O -0.36 -17.76 9.05 -56.61 -0.51 -18.28 16 14 C 0.49 22.26 6.34 70.25 0.45 22.70 16 15 O -0.54 -26.74 13.52 19.80 0.27 -26.47 16 16 C -0.13 -4.49 5.88 -20.09 -0.12 -4.61 16 17 C -0.06 -1.85 9.60 22.51 0.22 -1.64 16 18 C -0.11 -2.83 9.95 22.35 0.22 -2.61 16 19 C 0.19 4.56 5.40 38.38 0.21 4.77 16 20 N -0.59 -10.81 2.05 -646.74 -1.32 -12.13 16 21 C 0.08 0.57 7.61 86.65 0.66 1.23 16 22 C 0.10 0.23 8.06 86.65 0.70 0.93 16 23 N -0.73 -8.28 6.37 -477.35 -3.04 -11.32 16 24 C 0.69 15.49 7.95 179.57 1.43 16.92 16 25 O -0.63 -21.81 17.65 -3.95 -0.07 -21.88 16 26 C -0.09 -2.24 5.89 -19.79 -0.12 -2.35 16 27 C -0.10 -1.86 9.76 71.24 0.70 -1.17 16 28 C -0.06 -1.68 9.23 22.51 0.21 -1.47 16 29 H 0.03 1.55 6.06 -2.39 -0.01 1.53 16 30 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16 32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 4.88 5.95 -2.38 -0.01 4.87 16 34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.14 4.40 7.60 -2.91 -0.02 4.38 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.44 3.64 8.96 -92.70 -0.83 2.81 16 42 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.06 1.18 6.94 -2.39 -0.02 1.16 16 45 H 0.14 4.22 7.64 -2.91 -0.02 4.19 16 Total: -1.00 -80.91 374.32 3.85 -77.06 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.19 Total: 16.52 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.07 Total: 3.55 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -4.12 Total: -76.15 kcal Atomic # 8 Polarization: -66.31 SS G_CDS: -0.31 Total: -66.63 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -80.91 3.85 -77.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.452 kcal (2) G-P(sol) polarization free energy of solvation -80.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds