Wall clock time and date at job start Tue Mar 31 2020 17:38:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 109.47110 * 2 1
4 4 H 1.09001 * 109.47405 * 54.99913 * 3 2 1
5 5 C 1.50702 * 109.47107 * 174.99913 * 3 2 1
6 6 H 1.08005 * 119.99933 * 119.99909 * 5 3 2
7 7 C 1.37871 * 120.00184 * 299.99898 * 5 3 2
8 8 N 1.31516 * 120.00049 * 0.02562 * 7 5 3
9 9 Si 1.86805 * 120.00346 * 179.97438 * 7 5 3
10 10 H 1.48501 * 109.46860 * 59.99761 * 9 7 5
11 11 H 1.48498 * 109.47185 * 179.97438 * 9 7 5
12 12 H 1.48500 * 109.47101 * 300.00338 * 9 7 5
13 13 O 1.45201 * 109.47072 * 294.99654 * 3 2 1
14 14 C 1.34751 * 116.99732 * 90.00087 * 13 3 2
15 15 O 1.21510 * 120.00159 * 359.97438 * 14 13 3
16 16 C 1.47443 * 120.00112 * 180.02562 * 14 13 3
17 17 C 1.39836 * 120.07704 * 0.02562 * 16 14 13
18 18 C 1.37618 * 119.91798 * 179.72361 * 17 16 14
19 19 C 1.39173 * 120.08191 * 0.25403 * 18 17 16
20 20 N 1.39402 * 119.92193 * 180.02562 * 19 18 17
21 21 C 1.47046 * 125.41286 * 89.99599 * 20 19 18
22 22 C 1.54106 * 103.86576 * 180.02562 * 21 20 19
23 23 N 1.47050 * 103.85873 * 0.02562 * 22 21 20
24 24 C 1.33952 * 125.40475 * 269.69814 * 20 19 18
25 25 O 1.21575 * 123.04661 * 359.97438 * 24 20 19
26 26 C 1.39131 * 120.15928 * 0.02562 * 19 18 17
27 27 C 1.50699 * 119.96224 * 179.97438 * 26 19 18
28 28 C 1.37662 * 120.07924 * 359.97250 * 26 19 18
29 29 H 1.08991 * 109.47359 * 60.00163 * 1 2 3
30 30 H 1.09008 * 109.47043 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47299 * 299.99867 * 1 2 3
32 32 H 1.09002 * 109.47399 * 239.99187 * 2 1 3
33 33 H 1.09005 * 109.47502 * 119.99917 * 2 1 3
34 34 H 0.96997 * 120.00156 * 180.02562 * 8 7 5
35 35 H 1.08002 * 120.04266 * 0.02562 * 17 16 14
36 36 H 1.07999 * 119.95876 * 180.27930 * 18 17 16
37 37 H 1.08998 * 110.55188 * 298.60074 * 21 20 19
38 38 H 1.08997 * 110.54704 * 61.41028 * 21 20 19
39 39 H 1.09000 * 110.55139 * 118.59588 * 22 21 20
40 40 H 1.08997 * 110.55156 * 241.41227 * 22 21 20
41 41 H 0.97007 * 125.41062 * 180.02562 * 23 22 21
42 42 H 1.09006 * 109.46794 * 89.99710 * 27 26 19
43 43 H 1.08999 * 109.47306 * 209.99922 * 27 26 19
44 44 H 1.08998 * 109.46987 * 330.00216 * 27 26 19
45 45 H 1.07998 * 120.04164 * 180.02562 * 28 26 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6053 1.9816 0.8418
5 6 3.5419 1.4443 0.1239
6 1 4.1472 1.8889 -0.6523
7 6 4.1432 0.8784 1.2280
8 7 3.4062 0.3366 2.1729
9 14 6.0050 0.8800 1.3812
10 1 6.5005 2.2799 1.3807
11 1 6.3978 0.2168 2.6504
12 1 6.5967 0.1452 0.2343
13 8 1.6559 2.0916 -1.2407
14 6 0.4681 2.7278 -1.2561
15 8 -0.2278 2.7394 -0.2601
16 6 0.0124 3.4089 -2.4818
17 6 0.8112 3.3953 -3.6294
18 6 0.3801 4.0272 -4.7734
19 6 -0.8469 4.6839 -4.7874
20 7 -1.2806 5.3224 -5.9482
21 6 -2.0825 4.7020 -7.0132
22 6 -2.2744 5.8358 -8.0391
23 7 -1.5597 6.9745 -7.4435
24 6 -1.0378 6.6004 -6.2679
25 8 -0.3977 7.3513 -5.5576
26 6 -1.6418 4.7045 -3.6457
27 6 -2.9693 5.4174 -3.6656
28 6 -1.2170 4.0745 -2.4978
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5140 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 3.8292 -0.0611 2.9498
35 1 1.7632 2.8852 -3.6196
36 1 0.9945 4.0132 -5.6615
37 1 -1.5430 3.8678 -7.4617
38 1 -3.0453 4.3711 -6.6237
39 1 -1.8303 5.5644 -8.9969
40 1 -3.3325 6.0682 -8.1591
41 1 -1.4829 7.8579 -7.8368
42 1 -3.7501 4.7227 -3.9756
43 1 -3.1940 5.7950 -2.6681
44 1 -2.9242 6.2499 -4.3677
45 1 -1.8346 4.0906 -1.6120
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000787084350.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:38:01
Heat of formation + Delta-G solvation = -95.510112 kcal
Electronic energy + Delta-G solvation = -28382.899451 eV
Core-core repulsion = 24365.041477 eV
Total energy + Delta-G solvation = -4017.857974 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 332.157 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.45076 -41.48691 -39.93014 -37.65487 -37.48292 -35.60658 -35.25474 -33.83902
-33.32698 -31.41909 -29.73914 -29.33421 -28.00588 -26.05867 -24.94070 -23.83301
-23.10985 -22.74593 -21.79252 -20.93726 -19.04525 -18.97361 -18.53448 -17.89646
-17.64829 -17.44745 -17.07655 -16.54114 -16.12714 -16.06723 -15.39083 -15.24872
-14.92789 -14.81767 -14.76898 -14.60083 -14.34516 -14.11573 -13.77867 -13.40369
-13.31891 -13.27508 -13.19254 -13.14784 -12.97793 -12.85555 -12.79398 -12.55530
-12.29394 -12.15387 -11.76984 -11.57078 -11.49939 -11.34440 -10.83779 -10.53350
-10.49215 -10.08342 -9.82860 -9.69068 -8.27616 -6.44456 -0.52662 0.21400
1.40934 1.41558 1.44925 1.50984 1.53244 1.94777 1.96495 2.40973
2.57635 2.98794 3.01926 3.55438 3.66235 3.71533 3.81421 4.07475
4.13061 4.27543 4.32439 4.37277 4.38094 4.39740 4.49452 4.61057
4.69650 4.70524 4.76954 4.82776 4.90850 4.96295 5.01998 5.08031
5.11697 5.21255 5.24501 5.29906 5.37900 5.45083 5.50486 5.66466
5.88984 5.94850 6.09466 6.17970 6.39943 6.59199 6.93505 7.26415
7.48301 8.79092
Molecular weight = 332.16amu
Principal moments of inertia in cm(-1)
A = 0.020884 B = 0.002599 C = 0.002450
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.404709 B =10770.159690 C =11425.642862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.128 4.128
3 C 0.225 3.775
4 H 0.006 0.994
5 C -0.551 4.551
6 H 0.065 0.935
7 C 0.018 3.982
8 N -0.914 5.914
9 Si 0.980 3.020
10 H -0.271 1.271
11 H -0.276 1.276
12 H -0.263 1.263
13 O -0.355 6.355
14 C 0.492 3.508
15 O -0.539 6.539
16 C -0.126 4.126
17 C -0.061 4.061
18 C -0.114 4.114
19 C 0.191 3.809
20 N -0.592 5.592
21 C 0.084 3.916
22 C 0.097 3.903
23 N -0.729 5.729
24 C 0.693 3.307
25 O -0.635 6.635
26 C -0.090 4.090
27 C -0.102 4.102
28 C -0.055 4.055
29 H 0.035 0.965
30 H 0.063 0.937
31 H 0.035 0.965
32 H 0.047 0.953
33 H 0.088 0.912
34 H 0.271 0.729
35 H 0.145 0.855
36 H 0.153 0.847
37 H 0.103 0.897
38 H 0.104 0.896
39 H 0.111 0.889
40 H 0.113 0.887
41 H 0.439 0.561
42 H 0.099 0.901
43 H 0.073 0.927
44 H 0.061 0.939
45 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.404 7.398 -24.717 30.048
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.166 4.166
3 C 0.172 3.828
4 H 0.024 0.976
5 C -0.588 4.588
6 H 0.084 0.916
7 C -0.182 4.182
8 N -0.551 5.551
9 Si 0.803 3.197
10 H -0.197 1.197
11 H -0.201 1.201
12 H -0.187 1.187
13 O -0.272 6.272
14 C 0.339 3.661
15 O -0.431 6.431
16 C -0.128 4.128
17 C -0.080 4.080
18 C -0.133 4.133
19 C 0.100 3.900
20 N -0.327 5.327
21 C -0.037 4.037
22 C -0.027 4.027
23 N -0.391 5.391
24 C 0.394 3.606
25 O -0.515 6.515
26 C -0.092 4.092
27 C -0.158 4.158
28 C -0.074 4.074
29 H 0.054 0.946
30 H 0.082 0.918
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.106 0.894
34 H 0.080 0.920
35 H 0.162 0.838
36 H 0.171 0.829
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.130 0.870
40 H 0.131 0.869
41 H 0.282 0.718
42 H 0.117 0.883
43 H 0.092 0.908
44 H 0.080 0.920
45 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -15.231 7.565 -23.812 29.262
hybrid contribution 1.058 0.247 0.784 1.340
sum -14.173 7.812 -23.029 28.146
Atomic orbital electron populations
1.21712 0.96279 1.00672 1.00046 1.21860 0.94472 0.97836 1.02470
1.20431 0.94602 0.89405 0.78367 0.97582 1.21290 0.90425 1.40093
1.07029 0.91629 1.25786 1.04205 0.93852 0.94317 1.70002 1.37492
1.37820 1.09820 0.85278 0.77728 0.78686 0.77989 1.19654 1.20106
1.18719 1.86516 1.35057 1.62929 1.42674 1.21594 0.79946 0.76184
0.88408 1.90754 1.56011 1.59748 1.36634 1.19374 0.97806 1.03401
0.92181 1.21434 0.99290 0.96397 0.90843 1.21432 0.95550 0.97415
0.98903 1.17122 0.92952 0.94796 0.85167 1.44096 1.57363 1.10690
1.20531 1.22943 0.97117 0.97571 0.86040 1.22703 0.99840 0.83047
0.97090 1.45061 1.57625 1.16257 1.20115 1.16158 0.79710 0.82009
0.82745 1.90975 1.47562 1.56610 1.56389 1.20241 0.98762 0.98513
0.91649 1.20715 0.92020 0.99671 1.03422 1.21084 0.93765 0.94015
0.98550 0.94601 0.91790 0.94562 0.93390 0.89410 0.91979 0.83769
0.82925 0.87889 0.87805 0.87046 0.86904 0.71791 0.88284 0.90787
0.92047 0.84194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.82 8.56 71.98 0.62 -5.20 16
2 C -0.13 -6.58 5.49 30.59 0.17 -6.41 16
3 C 0.23 12.59 2.25 29.85 0.07 12.66 16
4 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16
5 C -0.55 -31.90 8.90 25.60 0.23 -31.67 16
6 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16
7 C 0.02 1.02 5.29 84.65 0.45 1.47 16
8 N -0.91 -52.95 11.29 21.45 0.24 -52.71 16
9 Si 0.98 43.63 29.54 68.60 2.03 45.65 16
10 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
12 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16
13 O -0.36 -17.76 9.05 -56.61 -0.51 -18.28 16
14 C 0.49 22.26 6.34 70.25 0.45 22.70 16
15 O -0.54 -26.74 13.52 19.80 0.27 -26.47 16
16 C -0.13 -4.49 5.88 -20.09 -0.12 -4.61 16
17 C -0.06 -1.85 9.60 22.51 0.22 -1.64 16
18 C -0.11 -2.83 9.95 22.35 0.22 -2.61 16
19 C 0.19 4.56 5.40 38.38 0.21 4.77 16
20 N -0.59 -10.81 2.05 -646.74 -1.32 -12.13 16
21 C 0.08 0.57 7.61 86.65 0.66 1.23 16
22 C 0.10 0.23 8.06 86.65 0.70 0.93 16
23 N -0.73 -8.28 6.37 -477.35 -3.04 -11.32 16
24 C 0.69 15.49 7.95 179.57 1.43 16.92 16
25 O -0.63 -21.81 17.65 -3.95 -0.07 -21.88 16
26 C -0.09 -2.24 5.89 -19.79 -0.12 -2.35 16
27 C -0.10 -1.86 9.76 71.24 0.70 -1.17 16
28 C -0.06 -1.68 9.23 22.51 0.21 -1.47 16
29 H 0.03 1.55 6.06 -2.39 -0.01 1.53 16
30 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16
31 H 0.04 1.72 7.79 -2.39 -0.02 1.70 16
32 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16
33 H 0.09 4.88 5.95 -2.38 -0.01 4.87 16
34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16
35 H 0.14 4.40 7.60 -2.91 -0.02 4.38 16
36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16
37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16
38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16
39 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16
40 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16
41 H 0.44 3.64 8.96 -92.70 -0.83 2.81 16
42 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16
43 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16
44 H 0.06 1.18 6.94 -2.39 -0.02 1.16 16
45 H 0.14 4.22 7.64 -2.91 -0.02 4.19 16
Total: -1.00 -80.91 374.32 3.85 -77.06
By element:
Atomic # 1 Polarization: 16.33 SS G_CDS: 0.19 Total: 16.52 kcal
Atomic # 6 Polarization: -2.52 SS G_CDS: 6.07 Total: 3.55 kcal
Atomic # 7 Polarization: -72.03 SS G_CDS: -4.12 Total: -76.15 kcal
Atomic # 8 Polarization: -66.31 SS G_CDS: -0.31 Total: -66.63 kcal
Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal
Total: -80.91 3.85 -77.06 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000787084350.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.452 kcal
(2) G-P(sol) polarization free energy of solvation -80.912 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds