Wall clock time and date at job start Tue Mar 31 2020 17:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 H 1.09002 * 109.47255 * 305.00057 * 3 2 1 5 5 C 1.50701 * 109.47403 * 184.99781 * 3 2 1 6 6 H 1.07997 * 120.00205 * 239.99963 * 5 3 2 7 7 C 1.37879 * 119.99570 * 60.00351 * 5 3 2 8 8 N 1.31510 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47288 * 59.99187 * 9 7 5 11 11 H 1.48493 * 109.47315 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99602 * 9 7 5 13 13 O 1.45206 * 109.47147 * 64.99953 * 3 2 1 14 14 C 1.34756 * 116.99995 * 270.00390 * 13 3 2 15 15 O 1.21519 * 120.00442 * 359.97438 * 14 13 3 16 16 C 1.47390 * 120.00160 * 179.97438 * 14 13 3 17 17 C 1.39840 * 120.08484 * 0.02562 * 16 14 13 18 18 C 1.37657 * 120.14361 * 180.34352 * 17 16 14 19 19 C 1.39138 * 120.18113 * 359.47531 * 18 17 16 20 20 C 1.39800 * 119.85537 * 0.44486 * 19 18 17 21 21 C 1.38001 * 120.23036 * 359.83820 * 20 19 18 22 22 N 1.40369 * 119.45640 * 179.97438 * 20 19 18 23 23 C 1.35146 * 118.51209 * 18.15026 * 22 20 19 24 24 O 1.21292 * 120.32109 * 180.76403 * 23 22 20 25 25 C 1.50692 * 119.36223 * 0.74850 * 23 22 20 26 26 H 1.08999 * 109.37534 * 204.82926 * 25 23 22 27 27 C 1.53003 * 109.37830 * 85.18245 * 25 23 22 28 28 N 1.39043 * 119.98602 * 180.02562 * 19 18 17 29 29 C 1.46896 * 111.00042 * 269.15819 * 28 19 18 30 30 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47002 * 299.99754 * 1 2 3 32 32 H 1.08993 * 109.47146 * 60.00019 * 1 2 3 33 33 H 1.09002 * 109.47152 * 239.99532 * 2 1 3 34 34 H 1.09003 * 109.47207 * 120.00532 * 2 1 3 35 35 H 0.97001 * 119.99834 * 180.02562 * 8 7 5 36 36 H 1.08002 * 119.92506 * 0.05906 * 17 16 14 37 37 H 1.07995 * 119.91300 * 179.75355 * 18 17 16 38 38 H 1.07995 * 120.12046 * 179.97438 * 21 20 19 39 39 H 0.96998 * 120.74289 * 198.17536 * 22 20 19 40 40 H 1.09001 * 109.46991 * 59.99372 * 27 25 23 41 41 H 1.09000 * 109.47200 * 180.02562 * 27 25 23 42 42 H 1.09000 * 109.46666 * 299.99993 * 27 25 23 43 43 H 1.09006 * 109.46981 * 294.75307 * 29 28 19 44 44 H 1.08993 * 109.47581 * 54.75499 * 29 28 19 45 45 H 1.08997 * 109.47309 * 174.75862 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8799 -1.3812 10 1 6.5967 0.1452 -0.2343 11 1 6.3978 0.2156 -2.6498 12 1 6.5005 2.2798 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4681 2.7279 1.2561 15 8 -0.2275 2.7403 0.2598 16 6 0.0125 3.4088 2.4813 17 6 0.8117 3.3962 3.6287 18 6 0.3843 4.0257 4.7759 19 6 -0.8398 4.6868 4.7963 20 6 -1.6411 4.7032 3.6508 21 6 -1.2206 4.0690 2.4996 22 7 -2.8747 5.3723 3.6809 23 6 -3.0929 6.2795 4.6586 24 8 -4.1523 6.8666 4.7238 25 6 -2.0075 6.5544 5.6671 26 1 -2.4553 6.9317 6.5865 27 6 -1.0466 7.6043 5.1054 28 7 -1.2674 5.3218 5.9570 29 6 -2.0635 4.4124 6.7918 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0618 -2.9495 36 1 1.7644 2.8875 3.6162 37 1 1.0027 4.0102 5.6611 38 1 -1.8412 4.0824 1.6159 39 1 -3.5555 5.1874 3.0151 40 1 -1.5938 8.5242 4.8992 41 1 -0.2606 7.8039 5.8336 42 1 -0.6009 7.2321 4.1829 43 1 -2.9844 4.1523 6.2697 44 1 -1.4907 3.5068 6.9911 45 1 -2.3066 4.9033 7.7342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:37 Heat of formation + Delta-G solvation = -86.759940 kcal Electronic energy + Delta-G solvation = -28748.351391 eV Core-core repulsion = 24730.872853 eV Total energy + Delta-G solvation = -4017.478538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90374 -39.82664 -38.73211 -37.03309 -35.75810 -35.29489 -33.53939 -32.02077 -31.39797 -30.55325 -29.65414 -27.36911 -26.18852 -24.79821 -23.62827 -23.25544 -22.81712 -21.45270 -19.91566 -19.05943 -18.49795 -18.01062 -16.88374 -16.64376 -16.35666 -15.87042 -15.72729 -15.38397 -15.21298 -14.99937 -14.56504 -14.45834 -14.08917 -13.65103 -13.51365 -13.13853 -13.00038 -12.86494 -12.75940 -12.46747 -12.19926 -11.95680 -11.77104 -11.76825 -11.49618 -11.31576 -11.24049 -11.00332 -10.95196 -10.83646 -10.70242 -10.32997 -9.88508 -9.74547 -9.47376 -9.42771 -8.86399 -8.80727 -8.49182 -8.24464 -6.21933 -4.29403 0.54429 1.01326 2.04979 2.54247 2.86561 3.18876 3.24088 3.27951 3.29600 3.52906 3.77957 3.82373 4.29674 4.39781 4.46933 4.67498 4.85855 4.95437 5.05781 5.09910 5.10481 5.12582 5.25168 5.37221 5.39254 5.45041 5.57509 5.73210 5.82976 6.00274 6.12980 6.19100 6.24797 6.29268 6.31231 6.41344 6.43684 6.59347 6.82364 6.91355 6.92136 7.12113 7.17897 7.54751 7.56959 7.68957 7.87916 8.10637 8.54392 8.82294 9.35865 10.84780 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.002716 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.574046 B =10306.592020 C =10757.825567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.348 6.348 14 C 0.495 3.505 15 O -0.510 6.510 16 C -0.085 4.085 17 C -0.070 4.070 18 C -0.085 4.085 19 C 0.080 3.920 20 C 0.106 3.894 21 C -0.081 4.081 22 N -0.661 5.661 23 C 0.494 3.506 24 O -0.523 6.523 25 C 0.069 3.931 26 H 0.126 0.874 27 C -0.141 4.141 28 N -0.485 5.485 29 C 0.023 3.977 30 H 0.033 0.967 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.267 0.733 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.414 0.586 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 8.491 16.819 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.264 6.264 14 C 0.339 3.661 15 O -0.401 6.401 16 C -0.087 4.087 17 C -0.089 4.089 18 C -0.105 4.105 19 C -0.018 4.018 20 C 0.008 3.992 21 C -0.102 4.102 22 N -0.308 5.308 23 C 0.280 3.720 24 O -0.396 6.396 25 C -0.042 4.042 26 H 0.144 0.856 27 C -0.199 4.199 28 N -0.205 5.205 29 C -0.122 4.122 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.253 0.747 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.051 0.949 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.891 8.914 16.802 20.996 hybrid contribution -0.188 -0.446 -1.163 1.260 sum -9.079 8.468 15.639 19.967 Atomic orbital electron populations 1.21863 0.98406 0.99066 1.00717 1.22028 0.92607 0.99293 1.03465 1.20724 0.95070 0.88746 0.78400 0.93417 1.20990 0.89543 1.39203 1.06340 0.91276 1.24880 0.99256 0.94714 0.95038 1.69875 1.35524 1.37639 1.09485 0.86335 0.83819 0.78513 0.77496 1.19904 1.21057 1.19961 1.86534 1.33281 1.62245 1.44295 1.20755 0.81262 0.77012 0.87050 1.90798 1.55549 1.58601 1.35174 1.19280 0.95105 1.00668 0.93630 1.21533 1.00018 0.96522 0.90824 1.20795 0.93599 0.97119 0.98980 1.18569 0.95417 0.99561 0.88233 1.18089 0.86757 0.98764 0.95541 1.20725 0.95914 0.97014 0.96531 1.43912 1.15912 1.39646 1.31329 1.21928 0.89649 0.78327 0.82141 1.90773 1.26881 1.48466 1.73509 1.22169 0.91928 0.92061 0.98037 0.85582 1.21781 0.98960 0.96811 1.02342 1.59096 1.39874 1.05371 1.16129 1.22560 0.95998 0.96825 0.96844 0.94774 0.94985 0.92811 0.87271 0.93868 0.92285 0.83133 0.83852 0.83872 0.74698 0.91022 0.89733 0.91728 0.94914 0.89779 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.16 0.32 -2.73 16 2 C -0.14 -3.26 5.49 -26.74 -0.15 -3.41 16 3 C 0.22 5.69 2.25 -27.89 -0.06 5.63 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.09 8.90 -34.44 -0.31 -14.40 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.47 11.29 55.43 0.63 -23.84 16 9 Si 0.91 20.48 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 O -0.35 -7.76 9.04 -40.64 -0.37 -8.13 16 14 C 0.50 9.86 6.34 34.46 0.22 10.08 16 15 O -0.51 -11.30 13.53 -19.28 -0.26 -11.56 16 16 C -0.08 -1.28 5.88 -104.96 -0.62 -1.90 16 17 C -0.07 -0.87 9.60 -39.19 -0.38 -1.25 16 18 C -0.09 -0.86 9.94 -39.46 -0.39 -1.25 16 19 C 0.08 0.82 3.99 -83.67 -0.33 0.49 16 20 C 0.11 1.19 6.17 -83.45 -0.52 0.68 16 21 C -0.08 -1.06 9.48 -39.05 -0.37 -1.43 16 22 N -0.66 -7.02 5.49 -9.65 -0.05 -7.08 16 23 C 0.49 5.54 6.37 -10.82 -0.07 5.47 16 24 O -0.52 -7.40 17.96 5.55 0.10 -7.30 16 25 C 0.07 0.61 2.73 -69.00 -0.19 0.42 16 26 H 0.13 0.92 7.99 -51.93 -0.42 0.51 16 27 C -0.14 -1.13 9.17 37.16 0.34 -0.79 16 28 N -0.49 -4.21 4.61 -172.71 -0.80 -5.01 16 29 C 0.02 0.17 9.34 60.06 0.56 0.73 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 32 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 33 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.15 1.88 7.60 -52.49 -0.40 1.48 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.87 7.65 -52.49 -0.40 1.47 16 39 H 0.41 3.93 8.90 -40.82 -0.36 3.57 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.61 7.29 -51.93 -0.38 0.23 16 43 H 0.03 0.27 7.59 -51.93 -0.39 -0.12 16 44 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 45 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -30.96 369.20 -8.49 -39.45 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.25 Total: 4.51 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.03 Total: -2.07 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.22 Total: -35.92 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.53 Total: -26.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.96 -8.49 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.310 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds