Wall clock time and date at job start Tue Mar 31 2020 17:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47376 * 2 1 4 4 H 1.09002 * 109.47255 * 305.00057 * 3 2 1 5 5 C 1.50701 * 109.47403 * 184.99781 * 3 2 1 6 6 H 1.07997 * 120.00205 * 239.99963 * 5 3 2 7 7 C 1.37879 * 119.99570 * 60.00351 * 5 3 2 8 8 N 1.31510 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99940 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47288 * 59.99187 * 9 7 5 11 11 H 1.48493 * 109.47315 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99602 * 9 7 5 13 13 O 1.45206 * 109.47147 * 64.99953 * 3 2 1 14 14 C 1.34756 * 116.99995 * 270.00390 * 13 3 2 15 15 O 1.21519 * 120.00442 * 359.97438 * 14 13 3 16 16 C 1.47390 * 120.00160 * 179.97438 * 14 13 3 17 17 C 1.39840 * 120.08484 * 0.02562 * 16 14 13 18 18 C 1.37657 * 120.14361 * 180.34352 * 17 16 14 19 19 C 1.39138 * 120.18113 * 359.47531 * 18 17 16 20 20 C 1.39800 * 119.85537 * 0.44486 * 19 18 17 21 21 C 1.38001 * 120.23036 * 359.83820 * 20 19 18 22 22 N 1.40369 * 119.45640 * 179.97438 * 20 19 18 23 23 C 1.35146 * 118.51209 * 18.15026 * 22 20 19 24 24 O 1.21292 * 120.32109 * 180.76403 * 23 22 20 25 25 C 1.50692 * 119.36223 * 0.74850 * 23 22 20 26 26 H 1.08999 * 109.37534 * 204.82926 * 25 23 22 27 27 C 1.53003 * 109.37830 * 85.18245 * 25 23 22 28 28 N 1.39043 * 119.98602 * 180.02562 * 19 18 17 29 29 C 1.46896 * 111.00042 * 269.15819 * 28 19 18 30 30 H 1.08997 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47002 * 299.99754 * 1 2 3 32 32 H 1.08993 * 109.47146 * 60.00019 * 1 2 3 33 33 H 1.09002 * 109.47152 * 239.99532 * 2 1 3 34 34 H 1.09003 * 109.47207 * 120.00532 * 2 1 3 35 35 H 0.97001 * 119.99834 * 180.02562 * 8 7 5 36 36 H 1.08002 * 119.92506 * 0.05906 * 17 16 14 37 37 H 1.07995 * 119.91300 * 179.75355 * 18 17 16 38 38 H 1.07995 * 120.12046 * 179.97438 * 21 20 19 39 39 H 0.96998 * 120.74289 * 198.17536 * 22 20 19 40 40 H 1.09001 * 109.46991 * 59.99372 * 27 25 23 41 41 H 1.09000 * 109.47200 * 180.02562 * 27 25 23 42 42 H 1.09000 * 109.46666 * 299.99993 * 27 25 23 43 43 H 1.09006 * 109.46981 * 294.75307 * 29 28 19 44 44 H 1.08993 * 109.47581 * 54.75499 * 29 28 19 45 45 H 1.08997 * 109.47309 * 174.75862 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8799 -1.3812 10 1 6.5967 0.1452 -0.2343 11 1 6.3978 0.2156 -2.6498 12 1 6.5005 2.2798 -1.3808 13 8 1.6559 2.0916 1.2407 14 6 0.4681 2.7279 1.2561 15 8 -0.2275 2.7403 0.2598 16 6 0.0125 3.4088 2.4813 17 6 0.8117 3.3962 3.6287 18 6 0.3843 4.0257 4.7759 19 6 -0.8398 4.6868 4.7963 20 6 -1.6411 4.7032 3.6508 21 6 -1.2206 4.0690 2.4996 22 7 -2.8747 5.3723 3.6809 23 6 -3.0929 6.2795 4.6586 24 8 -4.1523 6.8666 4.7238 25 6 -2.0075 6.5544 5.6671 26 1 -2.4553 6.9317 6.5865 27 6 -1.0466 7.6043 5.1054 28 7 -1.2674 5.3218 5.9570 29 6 -2.0635 4.4124 6.7918 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8293 -0.0618 -2.9495 36 1 1.7644 2.8875 3.6162 37 1 1.0027 4.0102 5.6611 38 1 -1.8412 4.0824 1.6159 39 1 -3.5555 5.1874 3.0151 40 1 -1.5938 8.5242 4.8992 41 1 -0.2606 7.8039 5.8336 42 1 -0.6009 7.2321 4.1829 43 1 -2.9844 4.1523 6.2697 44 1 -1.4907 3.5068 6.9911 45 1 -2.3066 4.9033 7.7342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:36 Heat of formation + Delta-G solvation = -106.101293 kcal Electronic energy + Delta-G solvation = -28749.190095 eV Core-core repulsion = 24730.872853 eV Total energy + Delta-G solvation = -4018.317242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78079 -41.37671 -39.80420 -38.07437 -37.37402 -36.24986 -35.45989 -33.38020 -32.74775 -31.48523 -30.64983 -29.26090 -27.03051 -25.77522 -25.11873 -24.35946 -23.94515 -22.78710 -21.65694 -20.18979 -19.64151 -18.94868 -18.65867 -18.06679 -17.30771 -17.17031 -17.05879 -16.79053 -16.47333 -16.05784 -15.84743 -15.45890 -14.99477 -14.96266 -14.73659 -14.42036 -14.22682 -14.16562 -13.67737 -13.44614 -13.37691 -13.31101 -13.21926 -13.10767 -12.78708 -12.70984 -12.54776 -12.51342 -12.47489 -12.13729 -11.94292 -11.75054 -11.74279 -11.48991 -11.32927 -10.81606 -10.51233 -10.38238 -9.70089 -9.17277 -8.25236 -6.41924 -0.52756 0.05570 1.13702 1.44214 1.47703 1.55204 1.56503 1.66169 2.00670 2.40708 2.47755 2.63194 2.96841 3.04892 3.55882 3.71159 3.80851 3.98504 4.04676 4.07669 4.25364 4.37127 4.38251 4.40166 4.44481 4.54072 4.66486 4.70435 4.76569 4.79081 4.86494 4.93791 5.01184 5.09065 5.15496 5.21873 5.24098 5.32479 5.38282 5.48993 5.53074 5.54323 5.68317 5.74173 5.97304 6.06439 6.11898 6.62347 6.66884 6.95820 7.29167 8.81333 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.002716 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.574046 B =10306.592020 C =10757.825567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.269 1.269 13 O -0.351 6.351 14 C 0.492 3.508 15 O -0.542 6.542 16 C -0.111 4.111 17 C -0.064 4.064 18 C -0.070 4.070 19 C 0.095 3.905 20 C 0.107 3.893 21 C -0.080 4.080 22 N -0.660 5.660 23 C 0.493 3.507 24 O -0.555 6.555 25 C 0.070 3.930 26 H 0.148 0.852 27 C -0.139 4.139 28 N -0.477 5.477 29 C 0.019 3.981 30 H 0.061 0.939 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.270 0.730 36 H 0.151 0.849 37 H 0.177 0.823 38 H 0.136 0.864 39 H 0.416 0.584 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.020 0.980 44 H 0.095 0.905 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 9.075 19.895 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.174 3.826 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.803 3.197 10 H -0.187 1.187 11 H -0.206 1.206 12 H -0.194 1.194 13 O -0.268 6.268 14 C 0.338 3.662 15 O -0.435 6.435 16 C -0.113 4.113 17 C -0.083 4.083 18 C -0.089 4.089 19 C -0.003 4.003 20 C 0.009 3.991 21 C -0.102 4.102 22 N -0.306 5.306 23 C 0.280 3.720 24 O -0.431 6.431 25 C -0.041 4.041 26 H 0.166 0.834 27 C -0.196 4.196 28 N -0.196 5.196 29 C -0.125 4.125 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.153 0.847 39 H 0.256 0.744 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.113 0.887 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.092 9.497 19.901 23.489 hybrid contribution -0.546 -0.543 -2.039 2.179 sum -8.637 8.954 17.862 21.768 Atomic orbital electron populations 1.21713 0.96473 1.00554 0.99998 1.21871 0.94287 0.98102 1.02499 1.20399 0.94609 0.89224 0.78417 0.97621 1.21307 0.90377 1.39934 1.06965 0.91193 1.25793 1.04147 0.93921 0.94392 1.70009 1.37505 1.37931 1.09892 0.85275 0.77797 0.78766 0.77849 1.18675 1.20551 1.19398 1.86508 1.34902 1.62838 1.42513 1.21581 0.79977 0.76213 0.88403 1.90773 1.56074 1.59826 1.36850 1.19009 0.96786 1.02957 0.92526 1.21571 0.99603 0.96470 0.90665 1.21016 0.93448 0.95506 0.98933 1.18803 0.95009 0.98087 0.88393 1.18061 0.87077 0.98567 0.95354 1.20607 0.95249 0.97219 0.97088 1.43955 1.15730 1.39446 1.31445 1.22455 0.89753 0.77546 0.82203 1.90762 1.28350 1.49600 1.74372 1.22339 0.91272 0.92261 0.98194 0.83421 1.21795 0.99198 0.96617 1.02023 1.59227 1.39991 1.05464 1.14922 1.22707 0.95317 0.97283 0.97225 0.92034 0.94521 0.94679 0.89562 0.93250 0.92096 0.83117 0.80525 0.84661 0.74424 0.90629 0.87864 0.93379 0.96155 0.88664 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.66 8.56 71.98 0.62 -5.04 16 2 C -0.13 -6.41 5.49 30.59 0.17 -6.24 16 3 C 0.23 12.09 2.25 29.85 0.07 12.16 16 4 H 0.01 0.36 7.16 -2.39 -0.02 0.35 16 5 C -0.55 -30.30 8.90 25.60 0.23 -30.07 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.92 -51.78 11.29 21.45 0.24 -51.54 16 9 Si 0.98 41.96 29.54 68.60 2.03 43.99 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 O -0.35 -16.25 9.04 -56.66 -0.51 -16.77 16 14 C 0.49 20.39 6.34 70.23 0.45 20.83 16 15 O -0.54 -25.43 13.53 19.77 0.27 -25.16 16 16 C -0.11 -3.38 5.88 -20.08 -0.12 -3.49 16 17 C -0.06 -1.51 9.60 22.52 0.22 -1.29 16 18 C -0.07 -1.19 9.94 22.35 0.22 -0.97 16 19 C 0.10 1.70 3.99 38.59 0.15 1.85 16 20 C 0.11 2.29 6.17 38.09 0.24 2.52 16 21 C -0.08 -2.12 9.48 22.61 0.21 -1.91 16 22 N -0.66 -13.45 5.49 -302.63 -1.66 -15.11 16 23 C 0.49 10.31 6.37 87.60 0.56 10.87 16 24 O -0.55 -15.17 17.96 -3.07 -0.06 -15.23 16 25 C 0.07 1.03 2.73 44.21 0.12 1.15 16 26 H 0.15 1.61 7.99 -2.39 -0.02 1.59 16 27 C -0.14 -1.85 9.17 71.98 0.66 -1.19 16 28 N -0.48 -6.55 4.61 -700.33 -3.23 -9.78 16 29 C 0.02 0.21 9.34 127.69 1.19 1.40 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.53 6.06 -2.39 -0.01 1.51 16 32 H 0.03 1.62 7.79 -2.39 -0.02 1.60 16 33 H 0.09 4.68 5.95 -2.39 -0.01 4.67 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.15 3.58 7.60 -2.91 -0.02 3.56 16 37 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.14 3.72 7.65 -2.91 -0.02 3.69 16 39 H 0.42 7.88 8.90 -92.71 -0.83 7.05 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 0.81 7.29 -2.39 -0.02 0.79 16 43 H 0.02 0.28 7.59 -2.38 -0.02 0.26 16 44 H 0.09 0.86 8.11 -2.39 -0.02 0.84 16 45 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 Total: -1.00 -69.54 369.20 2.71 -66.83 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.20 Total: 20.80 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.43 Total: 1.96 kcal Atomic # 7 Polarization: -71.78 SS G_CDS: -4.65 Total: -76.43 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -0.30 Total: -57.15 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -69.54 2.71 -66.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.268 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds