Wall clock time and date at job start Tue Mar 31 2020 17:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47468 * 2 1 4 4 H 1.09005 * 109.46839 * 55.00239 * 3 2 1 5 5 C 1.50700 * 109.47479 * 174.99740 * 3 2 1 6 6 H 1.07999 * 119.99415 * 119.99842 * 5 3 2 7 7 C 1.37874 * 120.00167 * 300.00821 * 5 3 2 8 8 N 1.31512 * 119.99637 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46737 * 90.00253 * 9 7 5 11 11 H 1.48492 * 109.47279 * 210.00389 * 9 7 5 12 12 H 1.48501 * 109.47180 * 330.00671 * 9 7 5 13 13 O 1.45194 * 109.47283 * 295.00432 * 3 2 1 14 14 C 1.34766 * 117.00129 * 89.99458 * 13 3 2 15 15 O 1.21514 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.47383 * 120.00017 * 180.02562 * 14 13 3 17 17 C 1.39835 * 120.08991 * 0.02562 * 16 14 13 18 18 C 1.37659 * 120.14958 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.17686 * 0.02562 * 18 17 16 20 20 C 1.39796 * 119.86109 * 359.87844 * 19 18 17 21 21 C 1.38010 * 120.22473 * 0.17683 * 20 19 18 22 22 N 1.40360 * 119.38888 * 180.02562 * 20 19 18 23 23 C 1.35155 * 118.50539 * 18.68596 * 22 20 19 24 24 O 1.21297 * 120.31599 * 180.53090 * 23 22 20 25 25 C 1.50689 * 119.36222 * 0.25746 * 23 22 20 26 26 H 1.08997 * 109.37530 * 205.06957 * 25 23 22 27 27 C 1.52999 * 109.37506 * 85.42089 * 25 23 22 28 28 N 1.39045 * 119.97645 * 179.86179 * 19 18 17 29 29 C 1.46905 * 110.99957 * 19.48623 * 28 19 18 30 30 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47164 * 299.99811 * 1 2 3 32 32 H 1.08993 * 109.47256 * 59.99637 * 1 2 3 33 33 H 1.09001 * 109.47164 * 240.00189 * 2 1 3 34 34 H 1.09006 * 109.47506 * 120.00257 * 2 1 3 35 35 H 0.97009 * 119.99582 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.92364 * 0.04709 * 17 16 14 37 37 H 1.07996 * 119.91336 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.11642 * 179.86524 * 21 20 19 39 39 H 0.97002 * 120.74668 * 198.43741 * 22 20 19 40 40 H 1.08997 * 109.47568 * 59.99616 * 27 25 23 41 41 H 1.08998 * 109.47399 * 180.02562 * 27 25 23 42 42 H 1.09004 * 109.47073 * 299.99983 * 27 25 23 43 43 H 1.08997 * 109.46875 * 177.52208 * 29 28 19 44 44 H 1.09000 * 109.46926 * 297.52223 * 29 28 19 45 45 H 1.09000 * 109.47022 * 57.52048 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8795 1.3357 9 14 3.0964 0.1098 2.5706 10 1 2.8746 -1.3262 2.2643 11 1 3.7941 0.2356 3.8754 12 1 1.7881 0.8090 2.6394 13 8 1.6559 2.0917 -1.2406 14 6 0.4680 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2598 16 6 0.0125 3.4089 -2.4810 17 6 0.8111 3.3955 -3.6288 18 6 0.3870 4.0316 -4.7736 19 6 -0.8378 4.6913 -4.7944 20 6 -1.6402 4.7055 -3.6498 21 6 -1.2199 4.0706 -2.4987 22 7 -2.8742 5.3737 -3.6819 23 6 -3.4274 5.6491 -4.8839 24 8 -4.4882 6.2337 -4.9501 25 6 -2.7108 5.2285 -6.1409 26 1 -3.0164 5.8737 -6.9645 27 6 -3.0749 3.7798 -6.4722 28 7 -1.2607 5.3349 -5.9521 29 6 -0.5386 4.8312 -7.1282 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8771 0.4816 2.1127 36 1 1.7625 2.8847 -3.6172 37 1 1.0071 4.0191 -5.6578 38 1 -1.8403 4.0845 -1.6148 39 1 -3.3216 5.6287 -2.8599 40 1 -4.1515 3.7011 -6.6230 41 1 -2.5570 3.4737 -7.3811 42 1 -2.7753 3.1323 -5.6481 43 1 -0.9195 5.3197 -8.0250 44 1 0.5246 5.0459 -7.0211 45 1 -0.6853 3.7543 -7.2108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:42 Heat of formation + Delta-G solvation = -73.957307 kcal Electronic energy + Delta-G solvation = -28846.117231 eV Core-core repulsion = 24829.193857 eV Total energy + Delta-G solvation = -4016.923374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.92521 -39.95945 -38.92872 -37.40696 -35.98601 -35.43430 -33.62039 -32.10493 -31.86903 -30.19651 -29.51917 -27.93916 -27.40289 -24.72890 -23.50535 -23.06354 -22.54265 -21.62165 -20.24568 -19.14373 -18.76451 -18.09330 -17.11447 -16.56511 -16.39435 -16.16227 -15.93374 -15.63125 -15.36458 -14.99664 -14.59813 -14.52267 -14.44629 -13.80834 -13.55051 -13.35362 -13.30822 -12.98894 -12.77279 -12.53804 -12.48869 -12.39359 -12.04357 -12.00725 -11.80266 -11.52318 -11.36074 -11.27700 -10.93543 -10.78204 -10.53628 -10.28984 -10.11764 -9.98692 -9.65419 -9.56298 -9.11474 -8.80618 -8.68702 -7.93057 -6.26145 -4.28662 0.56173 0.98458 2.00722 2.58149 2.79600 3.14620 3.16003 3.28895 3.30842 3.37942 3.72243 3.78129 4.20192 4.23479 4.37085 4.47601 4.72240 4.82774 4.93704 4.96847 5.01518 5.03930 5.08932 5.15101 5.21835 5.31800 5.46792 5.52943 5.58845 5.77346 5.83628 5.90847 6.00352 6.18072 6.24435 6.27014 6.34422 6.40675 6.53322 6.56694 6.64984 6.70045 6.84548 7.01296 7.31458 7.47363 7.56786 8.17908 8.53356 8.80788 9.30827 10.85763 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002822 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.187366 B = 9918.686884 C =10466.663139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.198 3.802 4 H 0.047 0.953 5 C -0.525 4.525 6 H 0.088 0.912 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.334 6.334 14 C 0.499 3.501 15 O -0.514 6.514 16 C -0.112 4.112 17 C -0.045 4.045 18 C -0.150 4.150 19 C 0.110 3.890 20 C 0.100 3.900 21 C -0.061 4.061 22 N -0.657 5.657 23 C 0.531 3.469 24 O -0.520 6.520 25 C 0.067 3.933 26 H 0.130 0.870 27 C -0.184 4.184 28 N -0.482 5.482 29 C 0.016 3.984 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.270 0.730 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.417 0.583 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.126 5.457 -17.307 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.186 4.186 3 C 0.144 3.856 4 H 0.065 0.935 5 C -0.563 4.563 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.524 5.524 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.250 6.250 14 C 0.344 3.656 15 O -0.406 6.406 16 C -0.115 4.115 17 C -0.065 4.065 18 C -0.171 4.171 19 C 0.009 3.991 20 C 0.003 3.997 21 C -0.082 4.082 22 N -0.303 5.303 23 C 0.318 3.682 24 O -0.394 6.394 25 C -0.042 4.042 26 H 0.147 0.853 27 C -0.243 4.243 28 N -0.196 5.196 29 C -0.129 4.129 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.163 0.837 39 H 0.256 0.744 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.619 6.230 -17.132 23.367 hybrid contribution -0.694 -1.063 1.302 1.818 sum -15.313 5.167 -15.830 22.623 Atomic orbital electron populations 1.21898 0.96987 1.00018 1.01800 1.22368 0.94357 0.99577 1.02266 1.21003 0.96352 0.88051 0.80149 0.93485 1.20777 0.87638 1.39959 1.07925 0.89425 1.24724 0.94937 0.95263 0.97358 1.69834 1.08486 1.44267 1.29811 0.87010 0.81048 0.80137 0.81327 1.19915 1.21681 1.18469 1.86550 1.33620 1.62301 1.42493 1.20820 0.80842 0.76721 0.87247 1.90787 1.55627 1.58878 1.35272 1.19045 0.95850 1.03116 0.93511 1.21461 0.99361 0.95168 0.90508 1.20960 0.95868 1.00185 1.00108 1.18768 0.94867 0.94991 0.90443 1.17178 0.87015 1.00675 0.94795 1.20650 0.95744 0.94910 0.96925 1.43694 1.20033 1.57090 1.09505 1.20558 0.84984 0.77781 0.84882 1.90795 1.22153 1.39713 1.86700 1.22042 0.85900 0.99454 0.96848 0.85251 1.22435 1.03880 0.94445 1.03512 1.58522 1.04683 1.53348 1.03059 1.22671 0.99921 0.99438 0.90876 0.93949 0.92538 0.93553 0.91171 0.91771 0.92032 0.83232 0.83912 0.83710 0.74399 0.90379 0.90045 0.91367 0.89998 0.89377 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.56 37.15 0.32 -2.54 16 2 C -0.15 -3.24 5.15 -26.73 -0.14 -3.38 16 3 C 0.20 4.79 1.84 -27.88 -0.05 4.74 16 4 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 5 C -0.53 -14.57 9.48 -34.44 -0.33 -14.89 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 7 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 8 N -0.89 -26.16 13.96 55.43 0.77 -25.38 16 9 Si 0.88 21.18 24.41 -169.99 -4.15 17.03 16 10 H -0.27 -6.32 6.83 56.52 0.39 -5.93 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 O -0.33 -7.19 9.04 -40.67 -0.37 -7.55 16 14 C 0.50 9.47 6.34 34.45 0.22 9.69 16 15 O -0.51 -10.71 13.52 -19.28 -0.26 -10.97 16 16 C -0.11 -1.64 5.88 -104.96 -0.62 -2.26 16 17 C -0.05 -0.56 9.60 -39.20 -0.38 -0.93 16 18 C -0.15 -1.45 8.95 -39.46 -0.35 -1.80 16 19 C 0.11 1.11 5.07 -83.67 -0.42 0.68 16 20 C 0.10 1.11 6.17 -83.45 -0.51 0.59 16 21 C -0.06 -0.77 9.48 -39.05 -0.37 -1.14 16 22 N -0.66 -6.77 5.49 -9.65 -0.05 -6.82 16 23 C 0.53 5.80 7.16 -10.82 -0.08 5.72 16 24 O -0.52 -7.15 17.96 5.54 0.10 -7.05 16 25 C 0.07 0.54 2.92 -69.02 -0.20 0.34 16 26 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 27 C -0.18 -1.21 8.48 37.16 0.31 -0.89 16 28 N -0.48 -4.00 4.86 -172.74 -0.84 -4.84 16 29 C 0.02 0.08 7.67 60.07 0.46 0.55 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.12 7.79 -51.93 -0.40 0.72 16 32 H 0.05 0.86 6.06 -51.93 -0.31 0.54 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.46 3.22 -51.93 -0.17 1.29 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.15 1.84 7.59 -52.49 -0.40 1.44 16 37 H 0.14 0.99 5.91 -52.49 -0.31 0.68 16 38 H 0.15 1.76 7.65 -52.48 -0.40 1.36 16 39 H 0.42 3.74 8.90 -40.82 -0.36 3.38 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.38 6.46 -51.93 -0.34 0.04 16 42 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 43 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 44 H 0.09 0.41 6.68 -51.93 -0.35 0.06 16 45 H 0.05 0.24 6.57 -51.93 -0.34 -0.10 16 LS Contribution 355.26 15.07 5.35 5.35 Total: -1.00 -32.98 355.26 -7.48 -40.46 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.80 Total: 3.13 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -2.23 Total: -3.36 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.12 Total: -37.04 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.53 Total: -25.57 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.15 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.98 -7.48 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.495 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds