Wall clock time and date at job start Tue Mar 31 2020 17:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47468 * 2 1 4 4 H 1.09005 * 109.46839 * 55.00239 * 3 2 1 5 5 C 1.50700 * 109.47479 * 174.99740 * 3 2 1 6 6 H 1.07999 * 119.99415 * 119.99842 * 5 3 2 7 7 C 1.37874 * 120.00167 * 300.00821 * 5 3 2 8 8 N 1.31512 * 119.99637 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46737 * 90.00253 * 9 7 5 11 11 H 1.48492 * 109.47279 * 210.00389 * 9 7 5 12 12 H 1.48501 * 109.47180 * 330.00671 * 9 7 5 13 13 O 1.45194 * 109.47283 * 295.00432 * 3 2 1 14 14 C 1.34766 * 117.00129 * 89.99458 * 13 3 2 15 15 O 1.21514 * 120.00051 * 359.97438 * 14 13 3 16 16 C 1.47383 * 120.00017 * 180.02562 * 14 13 3 17 17 C 1.39835 * 120.08991 * 0.02562 * 16 14 13 18 18 C 1.37659 * 120.14958 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.17686 * 0.02562 * 18 17 16 20 20 C 1.39796 * 119.86109 * 359.87844 * 19 18 17 21 21 C 1.38010 * 120.22473 * 0.17683 * 20 19 18 22 22 N 1.40360 * 119.38888 * 180.02562 * 20 19 18 23 23 C 1.35155 * 118.50539 * 18.68596 * 22 20 19 24 24 O 1.21297 * 120.31599 * 180.53090 * 23 22 20 25 25 C 1.50689 * 119.36222 * 0.25746 * 23 22 20 26 26 H 1.08997 * 109.37530 * 205.06957 * 25 23 22 27 27 C 1.52999 * 109.37506 * 85.42089 * 25 23 22 28 28 N 1.39045 * 119.97645 * 179.86179 * 19 18 17 29 29 C 1.46905 * 110.99957 * 19.48623 * 28 19 18 30 30 H 1.09004 * 109.47498 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47164 * 299.99811 * 1 2 3 32 32 H 1.08993 * 109.47256 * 59.99637 * 1 2 3 33 33 H 1.09001 * 109.47164 * 240.00189 * 2 1 3 34 34 H 1.09006 * 109.47506 * 120.00257 * 2 1 3 35 35 H 0.97009 * 119.99582 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.92364 * 0.04709 * 17 16 14 37 37 H 1.07996 * 119.91336 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.11642 * 179.86524 * 21 20 19 39 39 H 0.97002 * 120.74668 * 198.43741 * 22 20 19 40 40 H 1.08997 * 109.47568 * 59.99616 * 27 25 23 41 41 H 1.08998 * 109.47399 * 180.02562 * 27 25 23 42 42 H 1.09004 * 109.47073 * 299.99983 * 27 25 23 43 43 H 1.08997 * 109.46875 * 177.52208 * 29 28 19 44 44 H 1.09000 * 109.46926 * 297.52223 * 29 28 19 45 45 H 1.09000 * 109.47022 * 57.52048 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8795 1.3357 9 14 3.0964 0.1098 2.5706 10 1 2.8746 -1.3262 2.2643 11 1 3.7941 0.2356 3.8754 12 1 1.7881 0.8090 2.6394 13 8 1.6559 2.0917 -1.2406 14 6 0.4680 2.7280 -1.2559 15 8 -0.2279 2.7396 -0.2598 16 6 0.0125 3.4089 -2.4810 17 6 0.8111 3.3955 -3.6288 18 6 0.3870 4.0316 -4.7736 19 6 -0.8378 4.6913 -4.7944 20 6 -1.6402 4.7055 -3.6498 21 6 -1.2199 4.0706 -2.4987 22 7 -2.8742 5.3737 -3.6819 23 6 -3.4274 5.6491 -4.8839 24 8 -4.4882 6.2337 -4.9501 25 6 -2.7108 5.2285 -6.1409 26 1 -3.0164 5.8737 -6.9645 27 6 -3.0749 3.7798 -6.4722 28 7 -1.2607 5.3349 -5.9521 29 6 -0.5386 4.8312 -7.1282 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8771 0.4816 2.1127 36 1 1.7625 2.8847 -3.6172 37 1 1.0071 4.0191 -5.6578 38 1 -1.8403 4.0845 -1.6148 39 1 -3.3216 5.6287 -2.8599 40 1 -4.1515 3.7011 -6.6230 41 1 -2.5570 3.4737 -7.3811 42 1 -2.7753 3.1323 -5.6481 43 1 -0.9195 5.3197 -8.0250 44 1 0.5246 5.0459 -7.0211 45 1 -0.6853 3.7543 -7.2108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:41 Heat of formation + Delta-G solvation = -97.093236 kcal Electronic energy + Delta-G solvation = -28847.120480 eV Core-core repulsion = 24829.193857 eV Total energy + Delta-G solvation = -4017.926623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73507 -41.44244 -39.89743 -38.34222 -37.51349 -36.36536 -35.47506 -33.92136 -32.77053 -31.07083 -30.40070 -29.66010 -28.12429 -25.75368 -24.70209 -24.33498 -23.65420 -22.79653 -21.82264 -20.25785 -19.78589 -19.00916 -18.86241 -18.14697 -17.52234 -17.21550 -17.11252 -16.83479 -16.43452 -16.11585 -15.71564 -15.42460 -15.27762 -15.23537 -14.89203 -14.48298 -14.38510 -14.02484 -13.94583 -13.77903 -13.75500 -13.49272 -13.17734 -13.10840 -13.05036 -12.90998 -12.65336 -12.56320 -12.20311 -12.03234 -11.86382 -11.65522 -11.51103 -11.38501 -11.25565 -11.11544 -11.05682 -10.72534 -9.67934 -8.75332 -8.43372 -6.51267 -0.44669 0.08307 1.12959 1.23672 1.31886 1.41064 1.59976 1.68840 2.01353 2.20406 2.42391 2.69151 2.89190 2.98417 3.44698 3.69331 3.75676 3.91012 4.03141 4.09378 4.11028 4.15942 4.19400 4.26091 4.43438 4.48417 4.55240 4.57193 4.64715 4.65896 4.73207 4.93020 4.95092 4.99258 4.99542 5.04458 5.11481 5.26775 5.34066 5.37185 5.39689 5.44393 5.60640 5.66134 5.78806 6.02618 6.16210 6.52987 6.73487 6.89597 7.13579 8.72314 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002822 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.187366 B = 9918.686884 C =10466.663139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.146 4.146 3 C 0.202 3.798 4 H 0.029 0.971 5 C -0.537 4.537 6 H 0.050 0.950 7 C 0.032 3.968 8 N -0.929 5.929 9 Si 0.934 3.066 10 H -0.250 1.250 11 H -0.286 1.286 12 H -0.257 1.257 13 O -0.344 6.344 14 C 0.497 3.503 15 O -0.540 6.540 16 C -0.141 4.141 17 C -0.044 4.044 18 C -0.139 4.139 19 C 0.126 3.874 20 C 0.096 3.904 21 C -0.058 4.058 22 N -0.655 5.655 23 C 0.526 3.474 24 O -0.553 6.553 25 C 0.070 3.930 26 H 0.149 0.851 27 C -0.179 4.179 28 N -0.487 5.487 29 C 0.008 3.992 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.275 0.725 36 H 0.145 0.855 37 H 0.178 0.822 38 H 0.141 0.859 39 H 0.419 0.581 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.053 0.947 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 5.035 -19.626 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.046 0.954 5 C -0.574 4.574 6 H 0.068 0.932 7 C -0.168 4.168 8 N -0.568 5.568 9 Si 0.760 3.240 10 H -0.175 1.175 11 H -0.212 1.212 12 H -0.181 1.181 13 O -0.260 6.260 14 C 0.344 3.656 15 O -0.432 6.432 16 C -0.144 4.144 17 C -0.063 4.063 18 C -0.160 4.160 19 C 0.023 3.977 20 C -0.001 4.001 21 C -0.079 4.079 22 N -0.301 5.301 23 C 0.314 3.686 24 O -0.430 6.430 25 C -0.039 4.039 26 H 0.166 0.834 27 C -0.237 4.237 28 N -0.200 5.200 29 C -0.136 4.136 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.163 0.837 37 H 0.195 0.805 38 H 0.159 0.841 39 H 0.259 0.741 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.118 5.810 -19.489 25.949 hybrid contribution -0.235 -0.752 1.834 1.996 sum -16.353 5.058 -17.655 24.591 Atomic orbital electron populations 1.21806 0.94649 1.01945 1.01381 1.22269 0.96392 0.97436 1.02249 1.20666 0.93984 0.89747 0.80832 0.95359 1.20967 0.89601 1.39648 1.07213 0.93158 1.25509 0.96010 0.95652 0.99590 1.69953 1.10281 1.45558 1.30964 0.86063 0.79348 0.80379 0.78251 1.17521 1.21237 1.18087 1.86528 1.35450 1.63013 1.40999 1.21547 0.79547 0.75975 0.88548 1.90758 1.55969 1.59912 1.36599 1.18815 0.97538 1.05503 0.92541 1.21486 0.98846 0.95357 0.90639 1.21210 0.95914 0.98730 1.00123 1.18990 0.94506 0.93334 0.90841 1.17159 0.87420 1.00755 0.94780 1.20549 0.95013 0.94866 0.97522 1.43736 1.19809 1.56647 1.09925 1.21158 0.84688 0.77013 0.85724 1.90779 1.23682 1.41344 1.87178 1.22135 0.85301 1.00827 0.95625 0.83371 1.22434 1.04398 0.92800 1.04103 1.58512 1.05162 1.52764 1.03583 1.22917 1.00173 1.00504 0.90055 0.90742 0.93580 0.93419 0.90548 0.92339 0.91596 0.83696 0.80472 0.84075 0.74099 0.90197 0.87386 0.92795 0.87791 0.88446 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 8.56 71.98 0.62 -4.56 16 2 C -0.15 -6.30 5.15 30.59 0.16 -6.14 16 3 C 0.20 10.00 1.84 29.85 0.06 10.05 16 4 H 0.03 1.51 6.22 -2.38 -0.01 1.49 16 5 C -0.54 -30.90 9.48 25.60 0.24 -30.66 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 7 C 0.03 1.85 5.45 84.65 0.46 2.31 16 8 N -0.93 -56.24 13.96 21.45 0.30 -55.94 16 9 Si 0.93 43.80 24.41 68.60 1.67 45.48 16 10 H -0.25 -10.78 6.83 99.48 0.68 -10.10 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.26 -11.81 6.53 99.48 0.65 -11.16 16 13 O -0.34 -15.26 9.04 -56.77 -0.51 -15.78 16 14 C 0.50 19.34 6.34 70.23 0.45 19.79 16 15 O -0.54 -23.06 13.52 19.79 0.27 -22.79 16 16 C -0.14 -4.13 5.88 -20.08 -0.12 -4.25 16 17 C -0.04 -1.03 9.60 22.52 0.22 -0.81 16 18 C -0.14 -2.29 8.95 22.35 0.20 -2.09 16 19 C 0.13 2.19 5.07 38.59 0.20 2.39 16 20 C 0.10 2.00 6.17 38.10 0.23 2.23 16 21 C -0.06 -1.45 9.48 22.62 0.21 -1.24 16 22 N -0.66 -12.93 5.49 -302.62 -1.66 -14.59 16 23 C 0.53 10.71 7.16 87.59 0.63 11.34 16 24 O -0.55 -14.78 17.96 -3.08 -0.06 -14.84 16 25 C 0.07 0.92 2.92 44.22 0.13 1.05 16 26 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 27 C -0.18 -1.77 8.48 71.98 0.61 -1.16 16 28 N -0.49 -6.34 4.86 -700.43 -3.40 -9.74 16 29 C 0.01 0.04 7.67 127.69 0.98 1.02 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.78 7.79 -2.39 -0.02 1.76 16 32 H 0.05 1.72 6.06 -2.39 -0.01 1.71 16 33 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.06 2.58 3.22 -2.38 -0.01 2.57 16 35 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 36 H 0.15 3.53 7.59 -2.91 -0.02 3.51 16 37 H 0.18 1.68 5.91 -2.91 -0.02 1.66 16 38 H 0.14 3.53 7.65 -2.91 -0.02 3.51 16 39 H 0.42 7.48 8.90 -92.71 -0.83 6.65 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.11 0.51 6.46 -2.39 -0.02 0.49 16 42 H 0.05 0.71 7.29 -2.38 -0.02 0.70 16 43 H 0.10 0.19 8.10 -2.39 -0.02 0.17 16 44 H 0.10 0.41 6.68 -2.39 -0.02 0.40 16 45 H 0.07 0.25 6.57 -2.39 -0.02 0.24 16 Total: -1.00 -74.41 355.26 2.01 -72.39 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.14 Total: 16.54 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.27 Total: -0.73 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -4.76 Total: -80.27 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.30 Total: -53.41 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.67 Total: 45.48 kcal Total: -74.41 2.01 -72.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.701 kcal (2) G-P(sol) polarization free energy of solvation -74.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds