Wall clock time and date at job start Tue Mar 31 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 H 1.08997 * 109.47103 * 55.00135 * 3 2 1 5 5 C 1.50694 * 109.47136 * 175.00033 * 3 2 1 6 6 H 1.08003 * 120.00156 * 120.00066 * 5 3 2 7 7 C 1.37878 * 120.00345 * 300.00054 * 5 3 2 8 8 N 1.31517 * 119.99364 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00232 * 180.02562 * 7 5 3 10 10 H 1.48510 * 109.47241 * 89.99983 * 9 7 5 11 11 H 1.48497 * 109.47315 * 209.99865 * 9 7 5 12 12 H 1.48497 * 109.47322 * 330.00123 * 9 7 5 13 13 O 1.45199 * 109.47082 * 295.00397 * 3 2 1 14 14 C 1.34758 * 117.00735 * 89.99890 * 13 3 2 15 15 O 1.21520 * 119.99695 * 359.97438 * 14 13 3 16 16 C 1.47387 * 120.00593 * 179.97438 * 14 13 3 17 17 C 1.39832 * 120.08550 * 0.02853 * 16 14 13 18 18 C 1.37658 * 120.14628 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.17655 * 359.97438 * 18 17 16 20 20 C 1.39795 * 119.86115 * 359.88640 * 19 18 17 21 21 C 1.38006 * 120.22924 * 0.17133 * 20 19 18 22 22 N 1.40369 * 119.45675 * 180.25512 * 20 19 18 23 23 C 1.35152 * 118.50766 * 18.17791 * 22 20 19 24 24 O 1.21293 * 120.32155 * 180.74063 * 23 22 20 25 25 C 1.50686 * 119.35868 * 0.76994 * 23 22 20 26 26 H 1.08997 * 109.37805 * 85.15215 * 25 23 22 27 27 C 1.52999 * 109.37134 * 204.79838 * 25 23 22 28 28 N 1.39045 * 119.97316 * 179.86393 * 19 18 17 29 29 C 1.46901 * 110.99835 * 268.85341 * 28 19 18 30 30 H 1.08995 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47135 * 299.99814 * 1 2 3 32 32 H 1.09003 * 109.47420 * 60.00148 * 1 2 3 33 33 H 1.08999 * 109.47221 * 240.00446 * 2 1 3 34 34 H 1.09003 * 109.47420 * 119.99852 * 2 1 3 35 35 H 0.97007 * 119.99586 * 179.97438 * 8 7 5 36 36 H 1.08006 * 119.92666 * 0.03360 * 17 16 14 37 37 H 1.08003 * 119.91492 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.12337 * 179.86094 * 21 20 19 39 39 H 0.97000 * 120.74581 * 198.16520 * 22 20 19 40 40 H 1.09007 * 109.46762 * 180.58668 * 27 25 23 41 41 H 1.08995 * 109.47495 * 300.58388 * 27 25 23 42 42 H 1.08999 * 109.47170 * 60.58945 * 27 25 23 43 43 H 1.09004 * 109.47147 * 56.05509 * 29 28 19 44 44 H 1.09001 * 109.47126 * 176.04668 * 29 28 19 45 45 H 1.08995 * 109.47313 * 296.04771 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8814 1.3817 10 1 6.4416 2.1144 2.0849 11 1 6.4396 -0.3096 2.1548 12 1 6.6135 0.8418 0.0278 13 8 1.6558 2.0917 -1.2406 14 6 0.4680 2.7280 -1.2560 15 8 -0.2280 2.7396 -0.2599 16 6 0.0129 3.4098 -2.4809 17 6 0.8120 3.3971 -3.6283 18 6 0.3884 4.0340 -4.7729 19 6 -0.8369 4.6929 -4.7939 20 6 -1.6402 4.7055 -3.6499 21 6 -1.2204 4.0699 -2.4991 22 7 -2.8771 5.3683 -3.6822 23 6 -3.4270 5.6495 -4.8844 24 8 -4.4883 6.2330 -4.9509 25 6 -2.7092 5.2305 -6.1413 26 1 -2.9679 4.1986 -6.3786 27 6 -3.1379 6.1372 -7.2967 28 7 -1.2593 5.3372 -5.9514 29 6 -0.8295 6.7419 -5.9588 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0610 2.9499 36 1 1.7636 2.8864 -3.6166 37 1 1.0084 4.0215 -5.6571 38 1 -1.8413 4.0826 -1.6156 39 1 -3.3272 5.6186 -2.8603 40 1 -2.6274 5.8288 -8.2092 41 1 -4.2157 6.0591 -7.4394 42 1 -2.8759 7.1695 -7.0650 43 1 0.2529 6.7913 -5.8391 44 1 -1.1117 7.2033 -6.9051 45 1 -1.3105 7.2734 -5.1377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:47 Heat of formation + Delta-G solvation = -83.064660 kcal Electronic energy + Delta-G solvation = -28606.044659 eV Core-core repulsion = 24588.726360 eV Total energy + Delta-G solvation = -4017.318299 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87737 -39.84388 -38.74612 -37.15711 -35.79954 -35.34758 -33.53743 -32.04942 -31.36953 -30.26718 -29.35388 -27.58181 -27.07890 -24.21889 -23.59924 -23.18323 -22.81041 -21.26823 -19.88775 -18.99751 -18.50454 -18.05546 -17.13895 -16.80358 -16.44123 -16.07296 -15.74852 -15.37531 -15.11189 -14.82270 -14.66242 -14.48748 -14.05473 -13.65196 -13.47882 -13.11442 -12.95432 -12.85337 -12.57246 -12.42745 -12.21175 -12.11598 -11.74363 -11.59483 -11.50722 -11.33255 -11.23852 -10.99138 -10.95509 -10.83649 -10.70560 -10.31912 -9.88038 -9.74171 -9.46265 -9.43088 -8.85447 -8.80181 -8.49549 -8.25157 -6.22247 -4.29519 0.53939 1.01512 2.05804 2.52917 2.86467 3.20716 3.22293 3.28127 3.31311 3.53495 3.78221 3.82377 4.29531 4.34396 4.47565 4.68065 4.83887 4.97097 5.05576 5.09944 5.10750 5.12578 5.26265 5.28041 5.43537 5.48449 5.57664 5.70695 5.80669 6.00555 6.14658 6.19972 6.25381 6.29455 6.31136 6.41954 6.44349 6.58599 6.82836 6.91952 6.92398 7.12538 7.18284 7.55666 7.57112 7.69104 7.87962 8.10659 8.54333 8.82434 9.35745 10.84544 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002620 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.609541 B =10683.013370 C =11355.472889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.495 3.505 15 O -0.510 6.510 16 C -0.084 4.084 17 C -0.070 4.070 18 C -0.084 4.084 19 C 0.076 3.924 20 C 0.106 3.894 21 C -0.081 4.081 22 N -0.663 5.663 23 C 0.491 3.509 24 O -0.519 6.519 25 C 0.067 3.933 26 H 0.122 0.878 27 C -0.138 4.138 28 N -0.483 5.483 29 C 0.018 3.982 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.267 0.733 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.414 0.586 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 9.381 -17.209 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.195 1.195 13 O -0.263 6.263 14 C 0.339 3.661 15 O -0.401 6.401 16 C -0.086 4.086 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.021 4.021 20 C 0.009 3.991 21 C -0.102 4.102 22 N -0.310 5.310 23 C 0.277 3.723 24 O -0.392 6.392 25 C -0.044 4.044 26 H 0.139 0.861 27 C -0.196 4.196 28 N -0.202 5.202 29 C -0.128 4.128 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.253 0.747 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.253 9.369 -17.353 21.784 hybrid contribution 0.243 0.262 1.539 1.580 sum -9.010 9.631 -15.814 20.592 Atomic orbital electron populations 1.21866 0.98388 0.99087 1.00724 1.22027 0.92620 0.99270 1.03462 1.20731 0.95090 0.88774 0.78396 0.93425 1.21022 0.89535 1.39078 1.06319 0.91241 1.24886 0.99263 0.94727 0.95065 1.69892 1.35425 1.37743 1.09453 0.86280 0.83824 0.77704 0.78378 1.20422 1.20955 1.19548 1.86533 1.33272 1.62243 1.44292 1.20755 0.81264 0.77038 0.87031 1.90799 1.55527 1.58599 1.35183 1.19284 0.95037 1.00639 0.93636 1.21535 1.00006 0.96632 0.90770 1.20796 0.94530 0.96196 0.98786 1.18601 0.95379 1.00676 0.87481 1.18107 0.87392 0.98568 0.95067 1.20729 0.96110 0.96003 0.97350 1.43943 1.20004 1.57290 1.09729 1.21970 0.85713 0.78581 0.86074 1.90759 1.21831 1.39821 1.86814 1.22035 0.85732 1.03763 0.92824 0.86061 1.21828 1.02798 0.98745 0.96184 1.59121 1.11457 1.15389 1.34257 1.22654 1.02156 0.85865 1.02113 0.94759 0.92827 0.94958 0.93850 0.87281 0.92348 0.83104 0.83816 0.83856 0.74703 0.90217 0.90356 0.91590 0.89908 0.89514 0.94936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.56 37.16 0.32 -2.75 16 2 C -0.14 -3.27 5.49 -26.73 -0.15 -3.42 16 3 C 0.22 5.69 2.25 -27.88 -0.06 5.63 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.06 8.90 -34.44 -0.31 -14.37 16 6 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.49 11.29 55.43 0.63 -23.86 16 9 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 O -0.35 -7.78 9.04 -40.65 -0.37 -8.14 16 14 C 0.50 9.89 6.34 34.45 0.22 10.11 16 15 O -0.51 -11.32 13.52 -19.28 -0.26 -11.58 16 16 C -0.08 -1.28 5.88 -104.96 -0.62 -1.89 16 17 C -0.07 -0.89 9.60 -39.20 -0.38 -1.26 16 18 C -0.08 -0.85 9.94 -39.46 -0.39 -1.25 16 19 C 0.08 0.80 4.85 -83.67 -0.41 0.39 16 20 C 0.11 1.21 6.49 -83.45 -0.54 0.67 16 21 C -0.08 -1.07 9.48 -39.05 -0.37 -1.44 16 22 N -0.66 -7.09 5.49 -9.66 -0.05 -7.14 16 23 C 0.49 5.47 6.89 -10.82 -0.07 5.39 16 24 O -0.52 -7.13 16.95 5.55 0.09 -7.04 16 25 C 0.07 0.59 3.06 -69.03 -0.21 0.38 16 26 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 27 C -0.14 -0.94 8.00 37.16 0.30 -0.65 16 28 N -0.48 -4.25 4.76 -172.75 -0.82 -5.07 16 29 C 0.02 0.13 8.60 60.07 0.52 0.65 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 1.20 7.79 -51.92 -0.40 0.80 16 32 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.15 1.89 7.60 -52.48 -0.40 1.49 16 37 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 39 H 0.41 3.96 8.90 -40.82 -0.36 3.60 16 40 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.08 0.57 7.86 -51.93 -0.41 0.16 16 42 H 0.07 0.45 6.28 -51.93 -0.33 0.12 16 43 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.09 0.50 6.10 -51.93 -0.32 0.18 16 45 H 0.03 0.28 7.62 -51.93 -0.40 -0.12 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -30.87 365.37 -8.64 -39.50 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.09 Total: 4.59 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.25 Total: -2.22 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.25 Total: -36.08 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.53 Total: -26.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.87 -8.64 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.562 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds