Wall clock time and date at job start Tue Mar 31 2020 17:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47041 * 2 1 4 4 H 1.08997 * 109.47103 * 55.00135 * 3 2 1 5 5 C 1.50694 * 109.47136 * 175.00033 * 3 2 1 6 6 H 1.08003 * 120.00156 * 120.00066 * 5 3 2 7 7 C 1.37878 * 120.00345 * 300.00054 * 5 3 2 8 8 N 1.31517 * 119.99364 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00232 * 180.02562 * 7 5 3 10 10 H 1.48510 * 109.47241 * 89.99983 * 9 7 5 11 11 H 1.48497 * 109.47315 * 209.99865 * 9 7 5 12 12 H 1.48497 * 109.47322 * 330.00123 * 9 7 5 13 13 O 1.45199 * 109.47082 * 295.00397 * 3 2 1 14 14 C 1.34758 * 117.00735 * 89.99890 * 13 3 2 15 15 O 1.21520 * 119.99695 * 359.97438 * 14 13 3 16 16 C 1.47387 * 120.00593 * 179.97438 * 14 13 3 17 17 C 1.39832 * 120.08550 * 0.02853 * 16 14 13 18 18 C 1.37658 * 120.14628 * 180.02562 * 17 16 14 19 19 C 1.39138 * 120.17655 * 359.97438 * 18 17 16 20 20 C 1.39795 * 119.86115 * 359.88640 * 19 18 17 21 21 C 1.38006 * 120.22924 * 0.17133 * 20 19 18 22 22 N 1.40369 * 119.45675 * 180.25512 * 20 19 18 23 23 C 1.35152 * 118.50766 * 18.17791 * 22 20 19 24 24 O 1.21293 * 120.32155 * 180.74063 * 23 22 20 25 25 C 1.50686 * 119.35868 * 0.76994 * 23 22 20 26 26 H 1.08997 * 109.37805 * 85.15215 * 25 23 22 27 27 C 1.52999 * 109.37134 * 204.79838 * 25 23 22 28 28 N 1.39045 * 119.97316 * 179.86393 * 19 18 17 29 29 C 1.46901 * 110.99835 * 268.85341 * 28 19 18 30 30 H 1.08995 * 109.47227 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47135 * 299.99814 * 1 2 3 32 32 H 1.09003 * 109.47420 * 60.00148 * 1 2 3 33 33 H 1.08999 * 109.47221 * 240.00446 * 2 1 3 34 34 H 1.09003 * 109.47420 * 119.99852 * 2 1 3 35 35 H 0.97007 * 119.99586 * 179.97438 * 8 7 5 36 36 H 1.08006 * 119.92666 * 0.03360 * 17 16 14 37 37 H 1.08003 * 119.91492 * 180.02562 * 18 17 16 38 38 H 1.07996 * 120.12337 * 179.86094 * 21 20 19 39 39 H 0.97000 * 120.74581 * 198.16520 * 22 20 19 40 40 H 1.09007 * 109.46762 * 180.58668 * 27 25 23 41 41 H 1.08995 * 109.47495 * 300.58388 * 27 25 23 42 42 H 1.08999 * 109.47170 * 60.58945 * 27 25 23 43 43 H 1.09004 * 109.47147 * 56.05509 * 29 28 19 44 44 H 1.09001 * 109.47126 * 176.04668 * 29 28 19 45 45 H 1.08995 * 109.47313 * 296.04771 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0049 0.8814 1.3817 10 1 6.4416 2.1144 2.0849 11 1 6.4396 -0.3096 2.1548 12 1 6.6135 0.8418 0.0278 13 8 1.6558 2.0917 -1.2406 14 6 0.4680 2.7280 -1.2560 15 8 -0.2280 2.7396 -0.2599 16 6 0.0129 3.4098 -2.4809 17 6 0.8120 3.3971 -3.6283 18 6 0.3884 4.0340 -4.7729 19 6 -0.8369 4.6929 -4.7939 20 6 -1.6402 4.7055 -3.6499 21 6 -1.2204 4.0699 -2.4991 22 7 -2.8771 5.3683 -3.6822 23 6 -3.4270 5.6495 -4.8844 24 8 -4.4883 6.2330 -4.9509 25 6 -2.7092 5.2305 -6.1413 26 1 -2.9679 4.1986 -6.3786 27 6 -3.1379 6.1372 -7.2967 28 7 -1.2593 5.3372 -5.9514 29 6 -0.8295 6.7419 -5.9588 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8293 -0.0610 2.9499 36 1 1.7636 2.8864 -3.6166 37 1 1.0084 4.0215 -5.6571 38 1 -1.8413 4.0826 -1.6156 39 1 -3.3272 5.6186 -2.8603 40 1 -2.6274 5.8288 -8.2092 41 1 -4.2157 6.0591 -7.4394 42 1 -2.8759 7.1695 -7.0650 43 1 0.2529 6.7913 -5.8391 44 1 -1.1117 7.2033 -6.9051 45 1 -1.3105 7.2734 -5.1377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787086808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:46 Heat of formation + Delta-G solvation = -102.304052 kcal Electronic energy + Delta-G solvation = -28606.878941 eV Core-core repulsion = 24588.726360 eV Total energy + Delta-G solvation = -4018.152581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.75070 -41.38705 -39.82414 -38.13567 -37.43917 -36.32357 -35.46035 -33.39082 -32.80804 -31.18418 -30.31780 -29.24156 -28.06756 -25.57494 -24.75031 -24.35271 -23.93837 -22.59825 -21.60177 -20.14027 -19.53489 -19.01516 -18.68086 -18.12341 -17.72121 -17.24174 -17.10246 -16.89954 -16.47160 -15.92649 -15.69481 -15.58596 -14.99699 -14.96066 -14.74551 -14.39683 -14.24123 -14.12123 -13.69009 -13.40107 -13.31633 -13.18274 -13.11018 -12.98924 -12.79901 -12.79559 -12.67368 -12.53828 -12.24723 -12.11781 -11.93695 -11.75137 -11.71111 -11.49286 -11.33695 -10.80791 -10.52383 -10.37768 -9.69915 -9.18339 -8.25659 -6.42093 -0.53900 0.05349 1.14751 1.43865 1.45552 1.55044 1.58000 1.65244 2.00004 2.41298 2.47811 2.63344 2.98066 3.04612 3.55119 3.70903 3.79729 4.01348 4.03976 4.06688 4.25777 4.36471 4.38133 4.40173 4.42521 4.53616 4.66045 4.76674 4.78364 4.84629 4.88032 4.93034 5.01188 5.09086 5.20256 5.21713 5.24214 5.32983 5.38059 5.50355 5.53124 5.55573 5.68059 5.72584 5.97065 6.06288 6.11608 6.62327 6.68383 6.95473 7.28949 8.81208 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.002620 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.609541 B =10683.013370 C =11355.472889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.260 1.260 13 O -0.351 6.351 14 C 0.492 3.508 15 O -0.542 6.542 16 C -0.110 4.110 17 C -0.064 4.064 18 C -0.067 4.067 19 C 0.090 3.910 20 C 0.107 3.893 21 C -0.080 4.080 22 N -0.662 5.662 23 C 0.489 3.511 24 O -0.548 6.548 25 C 0.067 3.933 26 H 0.132 0.868 27 C -0.133 4.133 28 N -0.474 5.474 29 C 0.014 3.986 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.270 0.730 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.136 0.864 39 H 0.416 0.584 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 9.957 -20.250 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.173 3.827 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.184 1.184 13 O -0.267 6.267 14 C 0.338 3.662 15 O -0.435 6.435 16 C -0.112 4.112 17 C -0.084 4.084 18 C -0.087 4.087 19 C -0.008 4.008 20 C 0.009 3.991 21 C -0.102 4.102 22 N -0.308 5.308 23 C 0.276 3.724 24 O -0.423 6.423 25 C -0.044 4.044 26 H 0.149 0.851 27 C -0.190 4.190 28 N -0.193 5.193 29 C -0.131 4.131 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.154 0.846 39 H 0.256 0.744 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.416 9.956 -20.415 24.222 hybrid contribution -0.123 0.177 2.413 2.423 sum -8.539 10.133 -18.002 22.353 Atomic orbital electron populations 1.21717 0.96494 1.00554 0.99991 1.21871 0.94264 0.98110 1.02497 1.20409 0.94646 0.89234 0.78420 0.97599 1.21325 0.90333 1.39790 1.06918 0.91196 1.25800 1.04154 0.93945 0.94427 1.70023 1.37432 1.38040 1.09881 0.85219 0.77805 0.77834 0.78796 1.19996 1.20292 1.18404 1.86507 1.34882 1.62833 1.42513 1.21579 0.79984 0.76250 0.88373 1.90774 1.56048 1.59817 1.36853 1.19017 0.96722 1.02892 0.92535 1.21575 0.99586 0.96615 0.90600 1.21019 0.94425 0.94495 0.98727 1.18844 0.94945 0.99510 0.87493 1.18085 0.87782 0.98348 0.94837 1.20614 0.95452 0.96165 0.97954 1.43996 1.19777 1.56886 1.10160 1.22508 0.85380 0.77813 0.86670 1.90748 1.23189 1.41230 1.87164 1.22221 0.85299 1.04798 0.92100 0.85067 1.21835 1.02723 0.98366 0.96111 1.59245 1.11381 1.16137 1.32565 1.22792 1.02759 0.84648 1.02892 0.92046 0.94672 0.94540 0.93239 0.89563 0.92108 0.83064 0.80480 0.84617 0.74450 0.88008 0.90869 0.91479 0.88825 0.87251 0.96265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 8.56 71.98 0.62 -5.08 16 2 C -0.13 -6.42 5.49 30.60 0.17 -6.25 16 3 C 0.23 12.06 2.25 29.85 0.07 12.13 16 4 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 5 C -0.55 -30.15 8.90 25.60 0.23 -29.92 16 6 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.92 -51.81 11.29 21.45 0.24 -51.57 16 9 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 13 O -0.35 -16.25 9.04 -56.69 -0.51 -16.77 16 14 C 0.49 20.42 6.34 70.23 0.45 20.86 16 15 O -0.54 -25.44 13.52 19.77 0.27 -25.17 16 16 C -0.11 -3.36 5.88 -20.08 -0.12 -3.47 16 17 C -0.06 -1.53 9.60 22.52 0.22 -1.32 16 18 C -0.07 -1.16 9.94 22.35 0.22 -0.94 16 19 C 0.09 1.64 4.85 38.59 0.19 1.83 16 20 C 0.11 2.31 6.49 38.09 0.25 2.56 16 21 C -0.08 -2.14 9.48 22.62 0.21 -1.92 16 22 N -0.66 -13.58 5.49 -302.63 -1.66 -15.24 16 23 C 0.49 10.19 6.89 87.59 0.60 10.79 16 24 O -0.55 -14.60 16.95 -3.07 -0.05 -14.65 16 25 C 0.07 0.98 3.06 44.22 0.14 1.12 16 26 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 27 C -0.13 -1.41 8.00 71.98 0.58 -0.83 16 28 N -0.47 -6.68 4.76 -700.46 -3.34 -10.01 16 29 C 0.01 0.16 8.60 127.69 1.10 1.26 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.03 1.63 7.79 -2.38 -0.02 1.61 16 32 H 0.04 1.53 6.06 -2.39 -0.01 1.52 16 33 H 0.05 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.09 4.69 5.95 -2.39 -0.01 4.68 16 35 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 36 H 0.15 3.60 7.60 -2.91 -0.02 3.58 16 37 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 38 H 0.14 3.74 7.65 -2.91 -0.02 3.72 16 39 H 0.42 7.93 8.90 -92.71 -0.83 7.10 16 40 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.07 0.89 7.86 -2.39 -0.02 0.87 16 42 H 0.07 0.71 6.28 -2.39 -0.01 0.69 16 43 H 0.09 0.91 8.12 -2.39 -0.02 0.89 16 44 H 0.11 0.80 6.10 -2.39 -0.01 0.79 16 45 H 0.02 0.28 7.62 -2.39 -0.02 0.26 16 Total: -1.00 -69.13 365.37 2.53 -66.60 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.21 Total: 20.65 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 5.35 Total: 2.15 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -4.76 Total: -76.82 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -0.30 Total: -56.59 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.13 2.53 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.704 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds