Wall clock time and date at job start Tue Mar 31 2020 17:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46987 * 2 1 4 4 H 1.09002 * 109.46554 * 304.99904 * 3 2 1 5 5 C 1.50695 * 109.47072 * 185.00095 * 3 2 1 6 6 H 1.07996 * 120.00130 * 239.99371 * 5 3 2 7 7 C 1.37878 * 120.00217 * 59.99932 * 5 3 2 8 8 N 1.31512 * 120.00363 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00266 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47041 * 89.99490 * 9 7 5 11 11 H 1.48498 * 109.47498 * 210.00031 * 9 7 5 12 12 H 1.48502 * 109.47012 * 330.00401 * 9 7 5 13 13 O 1.45199 * 109.47088 * 64.99714 * 3 2 1 14 14 C 1.34764 * 117.00062 * 269.99781 * 13 3 2 15 15 O 1.21515 * 119.99708 * 0.02562 * 14 13 3 16 16 C 1.47387 * 119.99845 * 179.97438 * 14 13 3 17 17 C 1.39833 * 120.08669 * 0.03169 * 16 14 13 18 18 C 1.37668 * 120.14285 * 180.02562 * 17 16 14 19 19 C 1.39128 * 120.17751 * 359.97438 * 18 17 16 20 20 C 1.39798 * 119.86434 * 359.87323 * 19 18 17 21 21 C 1.38006 * 120.22343 * 0.19734 * 20 19 18 22 22 N 1.40365 * 119.45630 * 180.41316 * 20 19 18 23 23 C 1.35143 * 118.51799 * 18.08025 * 22 20 19 24 24 O 1.21298 * 120.31125 * 180.72387 * 23 22 20 25 25 C 1.50682 * 119.37316 * 0.76237 * 23 22 20 26 26 H 1.09000 * 109.36897 * 85.19805 * 25 23 22 27 27 C 1.52996 * 109.37530 * 204.84566 * 25 23 22 28 28 N 1.39045 * 119.97591 * 179.85289 * 19 18 17 29 29 C 1.46903 * 110.99795 * 268.74304 * 28 19 18 30 30 H 1.09002 * 109.47355 * 300.00046 * 1 2 3 31 31 H 1.08997 * 109.47323 * 60.00516 * 1 2 3 32 32 H 1.09005 * 109.46769 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47355 * 239.99954 * 2 1 3 34 34 H 1.08997 * 109.47323 * 119.99484 * 2 1 3 35 35 H 0.96990 * 120.00711 * 179.97438 * 8 7 5 36 36 H 1.07997 * 119.92855 * 0.03925 * 17 16 14 37 37 H 1.07994 * 119.90689 * 180.02562 * 18 17 16 38 38 H 1.07998 * 120.11628 * 179.85295 * 21 20 19 39 39 H 0.97007 * 120.73678 * 198.10523 * 22 20 19 40 40 H 1.08995 * 109.46952 * 180.59005 * 27 25 23 41 41 H 1.08997 * 109.47098 * 300.59145 * 27 25 23 42 42 H 1.08996 * 109.47069 * 60.59090 * 27 25 23 43 43 H 1.09003 * 109.47150 * 56.05520 * 29 28 19 44 44 H 1.09001 * 109.47048 * 176.04686 * 29 28 19 45 45 H 1.08995 * 109.47819 * 296.05051 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0048 0.8814 -1.3819 10 1 6.5548 -0.3500 -0.7601 11 1 6.3829 0.9225 -2.8173 12 1 6.5568 2.0740 -0.6902 13 8 1.6557 2.0917 1.2407 14 6 0.4679 2.7280 1.2559 15 8 -0.2280 2.7396 0.2598 16 6 0.0123 3.4089 2.4811 17 6 0.8115 3.3963 3.6285 18 6 0.3868 4.0315 4.7738 19 6 -0.8389 4.6893 4.7952 20 6 -1.6396 4.7070 3.6493 21 6 -1.2199 4.0709 2.4987 22 7 -2.8707 5.3806 3.6777 23 6 -3.0867 6.2890 4.6548 24 8 -4.1438 6.8805 4.7179 25 6 -2.0016 6.5607 5.6644 26 1 -1.3143 7.3063 5.2646 27 6 -2.6299 7.0927 6.9540 28 7 -1.2651 5.3268 5.9550 29 6 -2.0649 4.4208 6.7902 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.8293 -0.0611 -2.9498 36 1 1.7639 2.8874 3.6162 37 1 1.0073 4.0197 5.6576 38 1 -1.8409 4.0836 1.6152 39 1 -3.5513 5.1979 3.0112 40 1 -1.8454 7.2997 7.6818 41 1 -3.1779 8.0102 6.7396 42 1 -3.3140 6.3472 7.3593 43 1 -1.4863 3.5234 7.0098 44 1 -2.3262 4.9216 7.7224 45 1 -2.9754 4.1449 6.2584 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787086810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:51 Heat of formation + Delta-G solvation = -83.029499 kcal Electronic energy + Delta-G solvation = -28606.053727 eV Core-core repulsion = 24588.736953 eV Total energy + Delta-G solvation = -4017.316774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -41.87771 -39.84430 -38.74566 -37.15754 -35.80030 -35.34738 -33.53806 -32.04930 -31.37292 -30.26796 -29.35507 -27.58296 -27.08035 -24.21886 -23.60024 -23.18409 -22.81188 -21.26957 -19.88967 -18.99753 -18.50452 -18.05498 -17.13771 -16.81283 -16.43876 -16.06168 -15.73651 -15.38187 -15.14892 -14.78685 -14.67812 -14.48718 -14.05532 -13.64568 -13.44944 -13.18538 -12.94814 -12.84324 -12.52810 -12.43681 -12.27995 -12.01569 -11.82712 -11.58583 -11.50311 -11.32411 -11.22783 -11.02159 -10.94762 -10.83957 -10.68358 -10.32099 -9.88743 -9.74532 -9.46322 -9.42374 -8.86049 -8.80300 -8.49346 -8.25189 -6.22051 -4.29385 0.53919 1.01517 2.05825 2.52953 2.86517 3.21122 3.22432 3.28258 3.31390 3.53457 3.78238 3.82540 4.29709 4.34537 4.47543 4.68345 4.83676 4.96617 5.05594 5.10000 5.10598 5.12617 5.26315 5.28076 5.43361 5.48335 5.57623 5.70739 5.80668 6.00482 6.14624 6.19144 6.24823 6.29252 6.31112 6.41439 6.44268 6.58587 6.82422 6.91390 6.92347 7.12124 7.17925 7.55710 7.57176 7.68958 7.87973 8.10650 8.54368 8.82579 9.35929 10.84742 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.002602 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.390938 B =10759.205975 C =11249.319642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.495 3.505 15 O -0.510 6.510 16 C -0.084 4.084 17 C -0.070 4.070 18 C -0.083 4.083 19 C 0.076 3.924 20 C 0.106 3.894 21 C -0.081 4.081 22 N -0.663 5.663 23 C 0.491 3.509 24 O -0.519 6.519 25 C 0.067 3.933 26 H 0.122 0.878 27 C -0.138 4.138 28 N -0.483 5.483 29 C 0.018 3.982 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.414 0.586 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.285 8.377 17.567 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.263 6.263 14 C 0.339 3.661 15 O -0.401 6.401 16 C -0.086 4.086 17 C -0.089 4.089 18 C -0.103 4.103 19 C -0.021 4.021 20 C 0.009 3.991 21 C -0.102 4.102 22 N -0.310 5.310 23 C 0.277 3.723 24 O -0.392 6.392 25 C -0.044 4.044 26 H 0.140 0.860 27 C -0.195 4.195 28 N -0.202 5.202 29 C -0.128 4.128 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.253 0.747 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.561 8.810 17.550 21.841 hybrid contribution -0.122 -0.444 -1.282 1.362 sum -9.683 8.366 16.268 20.697 Atomic orbital electron populations 1.21865 0.98405 0.99064 1.00719 1.22029 0.92609 0.99284 1.03461 1.20734 0.95098 0.88754 0.78411 0.93409 1.21023 0.89532 1.39074 1.06322 0.91230 1.24883 0.99262 0.94741 0.95041 1.69880 1.35435 1.37730 1.09489 0.86281 0.83840 0.78699 0.77373 1.20340 1.20995 1.19585 1.86535 1.33285 1.62236 1.44285 1.20754 0.81270 0.77014 0.87046 1.90797 1.55545 1.58582 1.35177 1.19284 0.95109 1.00582 0.93617 1.21536 1.00041 0.96524 0.90845 1.20795 0.93528 0.96975 0.98999 1.18599 0.95458 0.99909 0.88180 1.18110 0.86802 0.98693 0.95527 1.20727 0.95922 0.97007 0.96539 1.43940 1.16112 1.39573 1.31336 1.21968 0.89881 0.78455 0.82026 1.90760 1.26928 1.48280 1.73261 1.22035 0.92926 0.93654 0.95745 0.86039 1.21826 1.01057 1.02195 0.94470 1.59120 1.39811 1.05296 1.15997 1.22652 0.96074 0.96671 0.97378 0.94982 0.92810 0.94776 0.87270 0.93872 0.92342 0.83105 0.83816 0.83857 0.74710 0.90213 0.90351 0.91601 0.89932 0.89515 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.15 0.32 -2.73 16 2 C -0.14 -3.26 5.49 -26.73 -0.15 -3.41 16 3 C 0.22 5.69 2.25 -27.88 -0.06 5.62 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.07 8.90 -34.44 -0.31 -14.38 16 6 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.50 11.29 55.43 0.63 -23.87 16 9 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 O -0.35 -7.78 9.04 -40.67 -0.37 -8.14 16 14 C 0.50 9.89 6.34 34.45 0.22 10.11 16 15 O -0.51 -11.32 13.53 -19.28 -0.26 -11.58 16 16 C -0.08 -1.28 5.88 -104.96 -0.62 -1.89 16 17 C -0.07 -0.89 9.60 -39.19 -0.38 -1.26 16 18 C -0.08 -0.85 9.94 -39.46 -0.39 -1.25 16 19 C 0.08 0.80 4.85 -83.68 -0.41 0.39 16 20 C 0.11 1.21 6.49 -83.45 -0.54 0.67 16 21 C -0.08 -1.07 9.48 -39.05 -0.37 -1.44 16 22 N -0.66 -7.09 5.49 -9.66 -0.05 -7.14 16 23 C 0.49 5.48 6.89 -10.83 -0.07 5.41 16 24 O -0.52 -7.14 16.95 5.54 0.09 -7.05 16 25 C 0.07 0.59 3.06 -69.03 -0.21 0.38 16 26 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 27 C -0.14 -0.95 8.00 37.16 0.30 -0.65 16 28 N -0.48 -4.25 4.76 -172.75 -0.82 -5.08 16 29 C 0.02 0.13 8.60 60.07 0.52 0.65 16 30 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 31 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.11 2.86 5.95 -51.93 -0.31 2.55 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 36 H 0.15 1.89 7.59 -52.49 -0.40 1.49 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 39 H 0.41 3.95 8.90 -40.82 -0.36 3.59 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 42 H 0.07 0.45 6.28 -51.93 -0.33 0.12 16 43 H 0.08 0.56 8.12 -51.93 -0.42 0.13 16 44 H 0.09 0.49 6.10 -51.93 -0.32 0.17 16 45 H 0.03 0.28 7.62 -51.93 -0.40 -0.12 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -30.88 365.37 -8.64 -39.52 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.09 Total: 4.54 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.25 Total: -2.19 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.25 Total: -36.09 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.53 Total: -26.77 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.88 -8.64 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787086810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.511 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds