Wall clock time and date at job start Tue Mar 31 2020 17:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.53001 * 109.47388 * 239.99591 * 2 1 3 5 5 O 1.45202 * 109.46863 * 60.00236 * 4 2 1 6 6 C 1.34704 * 116.99877 * 180.02562 * 5 4 2 7 7 O 1.21463 * 120.00118 * 359.97438 * 6 5 4 8 8 C 1.47764 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.39967 * 120.03435 * 359.71878 * 8 6 5 10 10 C 1.38313 * 120.35939 * 179.73939 * 9 8 6 11 11 C 1.37763 * 120.41402 * 0.56458 * 10 9 8 12 12 C 1.40751 * 120.05265 * 359.69671 * 11 10 9 13 13 C 1.41435 * 120.17760 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99845 * 150.17221 * 13 12 11 15 15 C 1.39935 * 119.99973 * 330.17774 * 13 12 11 16 16 N 1.30830 * 119.99991 * 161.73248 * 15 13 12 17 17 Si 1.86800 * 120.00133 * 341.72661 * 15 13 12 18 18 H 1.48500 * 109.47109 * 95.41317 * 17 15 13 19 19 H 1.48499 * 109.47265 * 215.41533 * 17 15 13 20 20 H 1.48507 * 109.46644 * 335.41685 * 17 15 13 21 21 C 1.39058 * 120.03231 * 179.97438 * 8 6 5 22 22 N 1.46503 * 109.47089 * 119.99803 * 2 1 3 23 23 C 1.47059 * 125.40681 * 299.71953 * 22 2 1 24 24 C 1.54102 * 103.85981 * 180.26279 * 23 22 2 25 25 N 1.47056 * 103.86238 * 359.97438 * 24 23 22 26 26 C 1.33945 * 109.18205 * 0.02562 * 25 24 23 27 27 O 1.21587 * 123.04303 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.47223 * 300.00324 * 1 2 3 29 29 H 1.09001 * 109.47101 * 60.00415 * 1 2 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46693 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46766 * 299.99790 * 3 2 1 33 33 H 1.08995 * 109.47309 * 59.99729 * 3 2 1 34 34 H 1.08999 * 109.47133 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47358 * 300.00276 * 4 2 1 36 36 H 1.08004 * 119.81683 * 0.02562 * 9 8 6 37 37 H 1.07996 * 119.79398 * 180.27750 * 10 9 8 38 38 H 1.08004 * 119.97285 * 179.71318 * 11 10 9 39 39 H 0.96994 * 120.00070 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.20353 * 359.95424 * 21 8 6 41 41 H 1.08999 * 110.55158 * 298.85660 * 23 22 2 42 42 H 1.09000 * 110.54966 * 61.67242 * 23 22 2 43 43 H 1.09007 * 110.55068 * 241.40932 * 24 23 22 44 44 H 1.08995 * 110.67295 * 118.65360 * 24 23 22 45 45 H 0.97008 * 125.40839 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5561 -0.0369 -2.4348 6 6 1.9176 -0.5491 -3.6270 7 8 2.6183 -1.5400 -3.6750 8 6 1.4618 0.0946 -4.8765 9 6 0.6494 1.2331 -4.8221 10 6 0.2233 1.8442 -5.9875 11 6 0.5836 1.3330 -7.2150 12 6 1.3954 0.1857 -7.2900 13 6 1.7674 -0.3411 -8.5488 14 1 2.7065 -0.8628 -8.6598 15 6 0.9186 -0.1861 -9.6506 16 7 1.3860 -0.3388 -10.8630 17 14 -0.8817 0.2387 -9.3902 18 1 -1.0648 1.7082 -9.5022 19 1 -1.7052 -0.4427 -10.4211 20 1 -1.3063 -0.2116 -8.0403 21 6 1.8350 -0.4333 -6.1077 22 7 2.0183 -0.6906 1.1962 23 6 1.7421 -0.2897 2.5839 24 6 2.4900 -1.3403 3.4275 25 7 3.1076 -2.2219 2.4255 26 6 2.7917 -1.7842 1.1997 27 8 3.1718 -2.3306 0.1822 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2492 36 1 0.3576 1.6394 -3.8649 37 1 -0.3996 2.7248 -5.9349 38 1 0.2430 1.8131 -8.1205 39 1 0.7976 -0.2318 -11.6266 40 1 2.4589 -1.3136 -6.1547 41 1 2.1349 0.7080 2.7794 42 1 0.6718 -0.3273 2.7872 43 1 1.7911 -1.8996 4.0496 44 1 3.2541 -0.8662 4.0434 45 1 3.6573 -2.9969 2.6213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788133101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:12 Heat of formation + Delta-G solvation = -75.158751 kcal Electronic energy + Delta-G solvation = -28407.596799 eV Core-core repulsion = 24390.621327 eV Total energy + Delta-G solvation = -4016.975473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.50866 -39.84388 -37.78325 -36.94693 -36.60169 -35.29341 -33.68179 -31.71461 -30.74245 -30.08292 -29.13613 -27.53027 -27.02433 -25.23852 -23.80121 -22.83535 -22.42069 -20.71027 -20.21857 -19.33714 -18.00930 -17.66055 -16.91219 -16.69175 -16.36848 -15.92786 -15.87634 -15.07480 -14.90791 -14.65182 -14.36196 -14.33857 -13.91770 -13.71851 -13.70685 -13.11434 -13.10615 -12.77181 -12.73731 -12.42153 -12.38347 -12.20713 -12.08381 -11.97010 -11.60921 -11.46638 -11.26633 -11.05787 -10.79277 -10.55961 -10.27066 -10.05615 -9.92059 -9.81014 -9.64016 -9.50372 -9.23047 -8.88980 -7.93364 -7.77090 -6.99708 -4.54787 1.76345 2.09822 2.51873 2.92740 3.05748 3.14566 3.18414 3.25498 3.44345 3.64110 3.93540 3.98220 4.35962 4.41530 4.46253 4.70367 4.78511 4.85173 4.95594 5.24818 5.25644 5.29926 5.39871 5.46991 5.55025 5.58276 5.65029 5.78590 5.89478 5.93596 6.03565 6.09373 6.16657 6.35061 6.51473 6.64476 6.67293 6.80542 6.86643 6.98446 7.20038 7.22886 7.42528 7.50045 7.73429 7.90504 8.28092 8.35581 8.43818 8.51956 8.71035 10.02561 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.002487 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.016280 B =11257.240701 C =11818.637970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.205 3.795 3 C -0.157 4.157 4 C 0.080 3.920 5 O -0.358 6.358 6 C 0.512 3.488 7 O -0.510 6.510 8 C -0.093 4.093 9 C -0.192 4.192 10 C -0.089 4.089 11 C -0.214 4.214 12 C 0.079 3.921 13 C -0.443 4.443 14 H 0.094 0.906 15 C 0.083 3.917 16 N -0.804 5.804 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.243 1.243 21 C -0.134 4.134 22 N -0.625 5.625 23 C 0.095 3.905 24 C 0.094 3.906 25 N -0.744 5.744 26 C 0.693 3.307 27 O -0.573 6.573 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 3.607 27.532 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.121 3.879 3 C -0.215 4.215 4 C 0.005 3.995 5 O -0.275 6.275 6 C 0.358 3.642 7 O -0.399 6.399 8 C -0.094 4.094 9 C -0.212 4.212 10 C -0.108 4.108 11 C -0.233 4.233 12 C 0.076 3.924 13 C -0.471 4.471 14 H 0.112 0.888 15 C -0.136 4.136 16 N -0.427 5.427 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.216 1.216 20 H -0.166 1.166 21 C -0.153 4.153 22 N -0.365 5.365 23 C -0.029 4.029 24 C -0.032 4.032 25 N -0.407 5.407 26 C 0.393 3.607 27 O -0.449 6.449 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.769 3.078 26.576 26.896 hybrid contribution -0.430 -0.228 0.341 0.594 sum -3.200 2.850 26.916 27.255 Atomic orbital electron populations 1.22180 0.93183 1.02893 1.03208 1.20093 0.94364 0.91768 0.81664 1.22184 1.01777 0.94294 1.03221 1.23154 1.00148 0.95364 0.80799 1.86419 1.70445 1.55931 1.14744 1.21716 0.77106 0.81847 0.83570 1.90804 1.35872 1.25540 1.87707 1.18778 1.03447 0.98330 0.88832 1.20584 1.04693 0.98467 0.97406 1.20575 0.99032 0.98547 0.92611 1.21250 1.06854 0.98769 0.96460 1.17643 0.91003 0.90798 0.92916 1.19489 1.05964 1.31126 0.90557 0.88799 1.26158 1.01786 0.91444 0.94211 1.69689 1.38216 1.35404 0.99433 0.86334 0.81327 0.78868 0.79929 1.19482 1.21609 1.16618 1.21301 1.03903 1.00120 0.90010 1.47274 1.53904 1.29308 1.06040 1.22317 1.01125 0.98878 0.80544 1.22331 0.97322 0.91499 0.92022 1.45138 1.56908 1.33036 1.05584 1.16068 0.79400 0.80998 0.84232 1.91070 1.59763 1.61504 1.32608 0.92159 0.89652 0.92138 0.92136 0.89639 0.92155 0.89995 0.89955 0.87286 0.87995 0.87720 0.90309 0.86488 0.89879 0.89874 0.90034 0.90007 0.72937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.41 37.16 0.31 -1.23 16 2 C 0.20 2.36 1.06 -131.82 -0.14 2.22 16 3 C -0.16 -1.54 8.39 37.16 0.31 -1.23 16 4 C 0.08 1.30 2.86 37.16 0.11 1.41 16 5 O -0.36 -6.38 8.12 -40.50 -0.33 -6.71 16 6 C 0.51 11.01 7.90 34.62 0.27 11.28 16 7 O -0.51 -12.36 16.12 -19.24 -0.31 -12.67 16 8 C -0.09 -2.08 5.87 -105.05 -0.62 -2.69 16 9 C -0.19 -3.90 9.62 -38.91 -0.37 -4.27 16 10 C -0.09 -1.85 10.01 -39.73 -0.40 -2.25 16 11 C -0.21 -5.01 7.17 -38.81 -0.28 -5.29 16 12 C 0.08 2.02 5.10 -106.87 -0.55 1.47 16 13 C -0.44 -12.00 9.57 -37.73 -0.36 -12.36 16 14 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 15 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 16 N -0.80 -21.28 13.93 55.55 0.77 -20.50 16 17 Si 0.91 20.38 24.52 -169.99 -4.17 16.21 16 18 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 19 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.24 -5.58 6.87 56.52 0.39 -5.19 16 21 C -0.13 -3.29 9.34 -38.42 -0.36 -3.65 16 22 N -0.62 -6.35 2.76 -163.87 -0.45 -6.80 16 23 C 0.09 0.50 6.87 -3.16 -0.02 0.48 16 24 C 0.09 0.39 8.06 -3.16 -0.03 0.36 16 25 N -0.74 -5.99 6.37 -64.70 -0.41 -6.40 16 26 C 0.69 8.74 8.47 -88.40 -0.75 7.99 16 27 O -0.57 -10.14 13.92 5.29 0.07 -10.07 16 28 H 0.06 0.43 7.72 -51.93 -0.40 0.03 16 29 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.90 7.68 -51.93 -0.40 0.51 16 33 H 0.06 0.43 7.69 -51.93 -0.40 0.03 16 34 H 0.08 1.52 7.08 -51.93 -0.37 1.15 16 35 H 0.08 1.53 7.07 -51.93 -0.37 1.16 16 36 H 0.11 1.91 7.59 -52.48 -0.40 1.51 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.11 2.41 4.72 -52.48 -0.25 2.16 16 39 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 40 H 0.12 2.91 7.64 -52.49 -0.40 2.51 16 41 H 0.08 0.32 7.82 -51.93 -0.41 -0.09 16 42 H 0.08 0.32 7.86 -51.93 -0.41 -0.09 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.43 2.82 8.96 -40.82 -0.37 2.46 16 LS Contribution 366.99 15.07 5.53 5.53 Total: -1.00 -33.06 366.99 -8.52 -41.58 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.27 Total: 5.51 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -2.96 Total: -5.67 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: -0.09 Total: -33.71 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.57 Total: -29.45 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.17 Total: 16.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.06 -8.52 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788133101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.578 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds