Wall clock time and date at job start Tue Mar 31 2020 17:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.53001 * 109.47388 * 239.99591 * 2 1 3 5 5 O 1.45202 * 109.46863 * 60.00236 * 4 2 1 6 6 C 1.34704 * 116.99877 * 180.02562 * 5 4 2 7 7 O 1.21463 * 120.00118 * 359.97438 * 6 5 4 8 8 C 1.47764 * 119.99942 * 179.97438 * 6 5 4 9 9 C 1.39967 * 120.03435 * 359.71878 * 8 6 5 10 10 C 1.38313 * 120.35939 * 179.73939 * 9 8 6 11 11 C 1.37763 * 120.41402 * 0.56458 * 10 9 8 12 12 C 1.40751 * 120.05265 * 359.69671 * 11 10 9 13 13 C 1.41435 * 120.17760 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99845 * 150.17221 * 13 12 11 15 15 C 1.39935 * 119.99973 * 330.17774 * 13 12 11 16 16 N 1.30830 * 119.99991 * 161.73248 * 15 13 12 17 17 Si 1.86800 * 120.00133 * 341.72661 * 15 13 12 18 18 H 1.48500 * 109.47109 * 95.41317 * 17 15 13 19 19 H 1.48499 * 109.47265 * 215.41533 * 17 15 13 20 20 H 1.48507 * 109.46644 * 335.41685 * 17 15 13 21 21 C 1.39058 * 120.03231 * 179.97438 * 8 6 5 22 22 N 1.46503 * 109.47089 * 119.99803 * 2 1 3 23 23 C 1.47059 * 125.40681 * 299.71953 * 22 2 1 24 24 C 1.54102 * 103.85981 * 180.26279 * 23 22 2 25 25 N 1.47056 * 103.86238 * 359.97438 * 24 23 22 26 26 C 1.33945 * 109.18205 * 0.02562 * 25 24 23 27 27 O 1.21587 * 123.04303 * 180.02562 * 26 25 24 28 28 H 1.08995 * 109.47223 * 300.00324 * 1 2 3 29 29 H 1.09001 * 109.47101 * 60.00415 * 1 2 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46693 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46766 * 299.99790 * 3 2 1 33 33 H 1.08995 * 109.47309 * 59.99729 * 3 2 1 34 34 H 1.08999 * 109.47133 * 179.97438 * 4 2 1 35 35 H 1.08998 * 109.47358 * 300.00276 * 4 2 1 36 36 H 1.08004 * 119.81683 * 0.02562 * 9 8 6 37 37 H 1.07996 * 119.79398 * 180.27750 * 10 9 8 38 38 H 1.08004 * 119.97285 * 179.71318 * 11 10 9 39 39 H 0.96994 * 120.00070 * 179.97438 * 16 15 13 40 40 H 1.08000 * 120.20353 * 359.95424 * 21 8 6 41 41 H 1.08999 * 110.55158 * 298.85660 * 23 22 2 42 42 H 1.09000 * 110.54966 * 61.67242 * 23 22 2 43 43 H 1.09007 * 110.55068 * 241.40932 * 24 23 22 44 44 H 1.08995 * 110.67295 * 118.65360 * 24 23 22 45 45 H 0.97008 * 125.40839 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5561 -0.0369 -2.4348 6 6 1.9176 -0.5491 -3.6270 7 8 2.6183 -1.5400 -3.6750 8 6 1.4618 0.0946 -4.8765 9 6 0.6494 1.2331 -4.8221 10 6 0.2233 1.8442 -5.9875 11 6 0.5836 1.3330 -7.2150 12 6 1.3954 0.1857 -7.2900 13 6 1.7674 -0.3411 -8.5488 14 1 2.7065 -0.8628 -8.6598 15 6 0.9186 -0.1861 -9.6506 16 7 1.3860 -0.3388 -10.8630 17 14 -0.8817 0.2387 -9.3902 18 1 -1.0648 1.7082 -9.5022 19 1 -1.7052 -0.4427 -10.4211 20 1 -1.3063 -0.2116 -8.0403 21 6 1.8350 -0.4333 -6.1077 22 7 2.0183 -0.6906 1.1962 23 6 1.7421 -0.2897 2.5839 24 6 2.4900 -1.3403 3.4275 25 7 3.1076 -2.2219 2.4255 26 6 2.7917 -1.7842 1.1997 27 8 3.1718 -2.3306 0.1822 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -1.7490 -1.2492 36 1 0.3576 1.6394 -3.8649 37 1 -0.3996 2.7248 -5.9349 38 1 0.2430 1.8131 -8.1205 39 1 0.7976 -0.2318 -11.6266 40 1 2.4589 -1.3136 -6.1547 41 1 2.1349 0.7080 2.7794 42 1 0.6718 -0.3273 2.7872 43 1 1.7911 -1.8996 4.0496 44 1 3.2541 -0.8662 4.0434 45 1 3.6573 -2.9969 2.6213 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788133101.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:11 Heat of formation + Delta-G solvation = -97.848080 kcal Electronic energy + Delta-G solvation = -28408.580683 eV Core-core repulsion = 24390.621327 eV Total energy + Delta-G solvation = -4017.959356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.33842 -41.47269 -39.49546 -38.25389 -37.56549 -36.61514 -35.59552 -32.75577 -32.34296 -31.87711 -29.71630 -28.31075 -28.29104 -27.10603 -25.24295 -23.68042 -23.26918 -22.53521 -21.92935 -20.27293 -19.69962 -18.56676 -18.27139 -17.98413 -17.71297 -17.32373 -17.28144 -16.50651 -16.43060 -15.76462 -15.46963 -15.34479 -15.32803 -14.82766 -14.67598 -14.61097 -14.58503 -14.06408 -13.96119 -13.81535 -13.40598 -13.24874 -13.19489 -12.90870 -12.85312 -12.73930 -12.71504 -12.35900 -12.28927 -12.24684 -11.82615 -11.77741 -11.66026 -11.49132 -11.06297 -11.00967 -10.34681 -9.74166 -9.65003 -9.51652 -8.92565 -6.57594 -0.06490 0.70854 1.17568 1.25874 1.42306 1.47736 1.64705 1.83325 2.03089 2.11735 2.58136 3.03302 3.31869 3.38474 3.59337 3.67298 3.86569 3.89624 4.19899 4.23513 4.38888 4.41682 4.43332 4.45414 4.57417 4.59456 4.74255 4.75842 4.83191 4.85793 4.88944 4.89316 4.98900 5.00971 5.09894 5.20660 5.30996 5.32406 5.36000 5.62200 5.66914 5.68934 5.80091 6.07751 6.16219 6.26143 6.49000 6.60197 6.69377 6.72765 7.51141 8.16479 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028419 B = 0.002487 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.016280 B =11257.240701 C =11818.637970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.208 3.792 3 C -0.151 4.151 4 C 0.086 3.914 5 O -0.337 6.337 6 C 0.514 3.486 7 O -0.548 6.548 8 C -0.101 4.101 9 C -0.159 4.159 10 C -0.083 4.083 11 C -0.212 4.212 12 C 0.064 3.936 13 C -0.488 4.488 14 H 0.050 0.950 15 C 0.045 3.955 16 N -0.847 5.847 17 Si 0.966 3.034 18 H -0.241 1.241 19 H -0.277 1.277 20 H -0.251 1.251 21 C -0.163 4.163 22 N -0.626 5.626 23 C 0.088 3.912 24 C 0.093 3.907 25 N -0.737 5.737 26 C 0.676 3.324 27 O -0.640 6.640 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.113 0.887 39 H 0.296 0.704 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 7.337 31.858 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.124 3.876 3 C -0.209 4.209 4 C 0.012 3.988 5 O -0.252 6.252 6 C 0.361 3.639 7 O -0.440 6.440 8 C -0.102 4.102 9 C -0.178 4.178 10 C -0.101 4.101 11 C -0.231 4.231 12 C 0.062 3.938 13 C -0.517 4.517 14 H 0.068 0.932 15 C -0.170 4.170 16 N -0.473 5.473 17 Si 0.787 3.213 18 H -0.165 1.165 19 H -0.203 1.203 20 H -0.174 1.174 21 C -0.183 4.183 22 N -0.365 5.365 23 C -0.033 4.033 24 C -0.031 4.031 25 N -0.398 5.398 26 C 0.376 3.624 27 O -0.523 6.523 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -6.243 6.854 30.990 32.348 hybrid contribution 0.718 -1.371 -0.700 1.699 sum -5.526 5.482 30.291 31.275 Atomic orbital electron populations 1.22162 0.91259 1.02568 1.04924 1.20097 0.95650 0.92111 0.79748 1.22166 1.00950 0.92871 1.04935 1.23202 0.98502 0.94906 0.82231 1.86388 1.69585 1.55156 1.14110 1.21692 0.76379 0.81206 0.84589 1.90797 1.37556 1.27267 1.88336 1.18936 1.03838 0.99301 0.88172 1.21139 1.01121 0.95970 0.99530 1.21109 0.98440 0.99557 0.90968 1.21500 1.05595 0.97602 0.98411 1.17711 0.92120 0.91859 0.92111 1.19427 1.05745 1.33838 0.92725 0.93208 1.26927 1.05511 0.91090 0.93457 1.69718 1.39931 1.37368 1.00287 0.85496 0.76016 0.80243 0.79534 1.16541 1.20346 1.17421 1.21199 1.05286 1.00394 0.91385 1.47312 1.53090 1.28472 1.07671 1.22777 1.03000 1.00276 0.77277 1.22695 0.98301 0.90898 0.91199 1.45175 1.56249 1.33327 1.05085 1.16511 0.79700 0.81544 0.84601 1.91024 1.62341 1.63617 1.35297 0.88257 0.90073 0.93519 0.93508 0.90067 0.88250 0.92981 0.92944 0.82971 0.82725 0.86916 0.89330 0.89086 0.87523 0.87514 0.87519 0.87489 0.72460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.41 71.98 0.61 -1.86 16 2 C 0.21 4.40 1.06 3.60 0.00 4.40 16 3 C -0.15 -2.46 8.39 71.98 0.60 -1.86 16 4 C 0.09 2.90 2.86 71.98 0.21 3.10 16 5 O -0.34 -11.82 8.12 -56.13 -0.46 -12.28 16 6 C 0.51 22.66 7.90 70.34 0.56 23.21 16 7 O -0.55 -28.36 16.12 19.96 0.32 -28.04 16 8 C -0.10 -4.52 5.87 -20.14 -0.12 -4.64 16 9 C -0.16 -5.81 9.62 22.71 0.22 -5.59 16 10 C -0.08 -3.03 10.01 22.18 0.22 -2.80 16 11 C -0.21 -9.49 7.17 22.77 0.16 -9.33 16 12 C 0.06 3.38 5.10 -21.32 -0.11 3.27 16 13 C -0.49 -28.36 9.57 23.47 0.22 -28.13 16 14 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 15 C 0.04 2.42 5.40 85.25 0.46 2.88 16 16 N -0.85 -46.96 13.93 21.82 0.30 -46.66 16 17 Si 0.97 41.41 24.52 68.60 1.68 43.09 16 18 H -0.24 -9.23 6.71 99.48 0.67 -8.56 16 19 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.25 -10.95 6.87 99.48 0.68 -10.26 16 21 C -0.16 -8.42 9.34 23.02 0.21 -8.21 16 22 N -0.63 -11.48 2.76 -791.10 -2.19 -13.67 16 23 C 0.09 0.53 6.87 86.65 0.59 1.13 16 24 C 0.09 0.40 8.06 86.65 0.70 1.10 16 25 N -0.74 -10.90 6.37 -477.34 -3.04 -13.94 16 26 C 0.68 17.12 8.47 179.57 1.52 18.64 16 27 O -0.64 -24.40 13.92 -3.99 -0.06 -24.45 16 28 H 0.10 0.87 7.72 -2.39 -0.02 0.85 16 29 H 0.08 1.41 7.68 -2.39 -0.02 1.40 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.41 7.68 -2.39 -0.02 1.39 16 33 H 0.10 0.86 7.69 -2.39 -0.02 0.85 16 34 H 0.05 2.07 7.08 -2.39 -0.02 2.05 16 35 H 0.05 2.09 7.07 -2.39 -0.02 2.07 16 36 H 0.15 4.35 7.59 -2.91 -0.02 4.33 16 37 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.11 4.87 4.72 -2.91 -0.01 4.86 16 39 H 0.30 14.58 8.30 -92.71 -0.77 13.82 16 40 H 0.09 5.04 7.64 -2.91 -0.02 5.02 16 41 H 0.11 0.20 7.82 -2.39 -0.02 0.18 16 42 H 0.11 0.20 7.86 -2.39 -0.02 0.18 16 43 H 0.11 0.00 8.14 -2.38 -0.02 -0.02 16 44 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.43 5.46 8.96 -92.70 -0.83 4.63 16 Total: -1.00 -82.15 366.99 2.76 -79.39 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.13 Total: 21.25 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 6.07 Total: -4.68 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -4.93 Total: -74.27 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -0.19 Total: -64.77 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.68 Total: 43.09 kcal Total: -82.15 2.76 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788133101.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.462 kcal (2) G-P(sol) polarization free energy of solvation -82.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds