Wall clock time and date at job start Tue Mar 31 2020 16:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47258 * 2 1 4 4 C 1.53006 * 109.46492 * 119.99995 * 2 1 3 5 5 N 1.46502 * 109.46720 * 174.74718 * 4 2 1 6 6 C 1.46499 * 120.00048 * 275.56912 * 5 4 2 7 7 C 1.50702 * 109.46845 * 278.89895 * 6 5 4 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99983 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99745 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46914 * 89.99545 * 11 9 7 13 13 H 1.48488 * 109.47382 * 209.99976 * 11 9 7 14 14 H 1.48506 * 109.46838 * 329.99955 * 11 9 7 15 15 C 1.34779 * 119.99879 * 95.57040 * 5 4 2 16 16 O 1.21579 * 119.99938 * 6.15208 * 15 5 4 17 17 C 1.47613 * 119.99653 * 186.14471 * 15 5 4 18 18 C 1.39722 * 120.06008 * 329.79301 * 17 15 5 19 19 C 1.37836 * 120.11519 * 180.02562 * 18 17 15 20 20 C 1.38702 * 120.07137 * 359.97438 * 19 18 17 21 21 C 1.39674 * 120.10309 * 0.02738 * 20 19 18 22 22 C 1.38094 * 120.12026 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.24596 * 179.97438 * 21 20 19 24 24 C 1.35086 * 118.96550 * 15.79527 * 23 21 20 25 25 O 1.21287 * 120.14131 * 181.36803 * 24 23 21 26 26 C 1.50747 * 119.72653 * 1.16446 * 24 23 21 27 27 O 1.35848 * 120.50649 * 180.09238 * 20 19 18 28 28 H 1.08992 * 109.47001 * 300.00694 * 1 2 3 29 29 H 1.09006 * 109.46487 * 60.00322 * 1 2 3 30 30 H 1.08992 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47299 * 239.99162 * 2 1 3 32 32 H 1.08996 * 109.47390 * 65.95508 * 3 2 1 33 33 H 1.09008 * 109.47273 * 185.95293 * 3 2 1 34 34 H 1.09000 * 109.47145 * 305.94635 * 3 2 1 35 35 H 1.09000 * 109.47391 * 54.74525 * 4 2 1 36 36 H 1.09002 * 109.46901 * 294.74137 * 4 2 1 37 37 H 1.08995 * 109.47351 * 38.89458 * 6 5 4 38 38 H 1.08999 * 109.47286 * 158.89965 * 6 5 4 39 39 H 0.97001 * 119.99786 * 180.02562 * 10 9 7 40 40 H 1.08007 * 119.94101 * 359.97438 * 18 17 15 41 41 H 1.07999 * 119.96670 * 179.97438 * 19 18 17 42 42 H 1.07996 * 120.15270 * 180.02562 * 22 21 20 43 43 H 0.97004 * 120.51976 * 195.52273 * 23 21 20 44 44 H 1.09001 * 109.53639 * 208.86225 * 26 24 23 45 45 H 1.08996 * 109.21479 * 89.00980 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4995 -0.8318 1.1878 6 6 4.1201 -1.9370 0.4533 7 6 4.1238 -3.1734 1.3149 8 1 3.7061 -3.1392 2.3103 9 6 4.6615 -4.3480 0.8329 10 7 5.1706 -4.3895 -0.3790 11 14 4.6668 -5.8804 1.9012 12 1 3.4169 -6.6485 1.6710 13 1 5.8377 -6.7238 1.5511 14 1 4.7498 -5.4869 3.3307 15 6 4.2712 0.0833 1.8071 16 8 3.7603 0.9348 2.5086 17 6 5.7368 0.0515 1.6337 18 6 6.3887 -1.1635 1.4084 19 6 7.7572 -1.1946 1.2468 20 6 8.4910 -0.0191 1.3070 21 6 7.8455 1.1990 1.5319 22 6 6.4747 1.2371 1.6947 23 7 8.6052 2.3767 1.5899 24 6 9.8702 2.3632 1.1161 25 8 10.5545 3.3627 1.1783 26 6 10.4294 1.0994 0.5140 27 8 9.8399 -0.0392 1.1471 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.7664 1.9246 0.9384 33 1 3.1249 1.4443 -0.1066 34 1 1.5924 1.9861 -0.8320 35 1 1.6017 -1.7182 1.2976 36 1 1.7554 -0.1559 2.1368 37 1 3.5541 -2.1309 -0.4578 38 1 5.1451 -1.6713 0.1947 39 1 5.5485 -5.2159 -0.7182 40 1 5.8194 -2.0802 1.3616 41 1 8.2588 -2.1352 1.0732 42 1 5.9750 2.1786 1.8682 43 1 8.2267 3.1892 1.9608 44 1 11.5098 1.0749 0.6564 45 1 10.2034 1.0795 -0.5521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792521519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:32 Heat of formation + Delta-G solvation = -63.492757 kcal Electronic energy + Delta-G solvation = -29243.471988 eV Core-core repulsion = 25227.002390 eV Total energy + Delta-G solvation = -4016.469597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.40399 -39.79267 -38.58334 -37.17637 -35.98460 -35.29459 -34.15798 -32.49321 -30.61334 -29.80684 -28.12776 -27.56720 -26.84775 -25.83740 -23.86170 -22.98824 -22.66121 -20.78084 -19.63892 -19.03678 -18.42938 -17.83192 -17.17293 -16.71225 -16.12228 -15.91876 -15.68047 -15.07852 -14.75124 -14.70942 -14.47356 -14.36662 -13.94535 -13.86558 -13.68500 -13.29563 -12.94896 -12.86991 -12.57839 -12.48230 -12.24273 -11.96220 -11.54016 -11.43571 -11.38051 -11.10172 -11.02142 -10.89972 -10.76895 -10.62099 -10.42876 -10.22394 -10.18470 -9.94480 -9.70868 -9.18982 -8.75614 -8.49507 -7.81617 -7.73671 -6.37759 -4.48070 1.05132 1.35482 2.23923 2.68412 3.13539 3.20500 3.22377 3.26133 3.36792 3.76394 3.94839 4.09297 4.22437 4.72870 4.79912 4.92580 4.98552 5.09037 5.22419 5.27058 5.41282 5.46074 5.46653 5.80099 5.85790 5.91962 5.94381 5.98718 6.08262 6.11906 6.24491 6.30629 6.36603 6.36854 6.49797 6.56935 6.63065 6.72987 6.76258 6.79345 7.07120 7.07709 7.34350 7.41647 7.57956 7.68529 7.82753 8.22234 8.61585 8.87689 9.21044 10.66233 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004578 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.036648 B = 6114.327994 C = 8440.468211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.206 3.794 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.879 5.879 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.560 3.440 16 O -0.567 6.567 17 C -0.126 4.126 18 C -0.078 4.078 19 C -0.120 4.120 20 C 0.094 3.906 21 C 0.058 3.942 22 C -0.069 4.069 23 N -0.654 5.654 24 C 0.491 3.509 25 O -0.525 6.525 26 C 0.050 3.950 27 O -0.302 6.302 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.270 0.730 40 H 0.213 0.787 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.414 0.586 44 H 0.143 0.857 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 6.819 -1.126 7.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.194 4.194 4 C 0.000 4.000 5 N -0.312 5.312 6 C 0.087 3.913 7 C -0.585 4.585 8 H 0.085 0.915 9 C -0.135 4.135 10 N -0.516 5.516 11 Si 0.723 3.277 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.195 1.195 15 C 0.349 3.651 16 O -0.448 6.448 17 C -0.129 4.129 18 C -0.096 4.096 19 C -0.139 4.139 20 C 0.048 3.952 21 C -0.036 4.036 22 C -0.090 4.090 23 N -0.301 5.301 24 C 0.278 3.722 25 O -0.401 6.401 26 C -0.028 4.028 27 O -0.216 6.216 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.228 0.772 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.253 0.747 44 H 0.161 0.839 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.474 7.384 -0.915 7.841 hybrid contribution -0.166 -0.384 0.455 0.618 sum 2.308 7.000 -0.460 7.385 Atomic orbital electron populations 1.21744 0.95161 1.01651 1.01359 1.21494 0.95371 0.96744 0.99598 1.21751 1.00845 0.95762 1.01090 1.21412 0.80365 1.00813 0.97419 1.48010 1.05841 1.26401 1.50991 1.20319 0.95719 0.83072 0.92197 1.21468 1.40849 0.94380 1.01836 0.91510 1.24991 0.94499 0.98914 0.95078 1.69925 1.37753 1.28204 1.15682 0.86506 0.77972 0.82378 0.80882 1.20336 1.20801 1.19454 1.18020 0.86094 0.81249 0.79762 1.90682 1.75011 1.38974 1.40179 1.19807 0.94062 0.93484 1.05577 1.23451 0.93938 1.01774 0.90393 1.20670 0.93336 0.96412 1.03437 1.18963 0.82076 0.92796 1.01410 1.17722 0.91647 0.85129 1.09094 1.20536 0.90096 0.98956 0.99427 1.43649 1.13560 1.12451 1.60489 1.21542 0.81366 0.91161 0.78140 1.90786 1.57982 1.35685 1.55608 1.23149 1.00269 0.81142 0.98250 1.86220 1.18117 1.40785 1.76457 0.92826 0.92965 0.92566 0.90937 0.92457 0.93189 0.93710 0.90293 0.90536 0.94721 0.91558 0.92054 0.77154 0.83905 0.84645 0.74675 0.83936 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.11 -1.69 3.12 -90.62 -0.28 -1.97 16 3 C -0.14 -2.05 8.22 37.15 0.31 -1.75 16 4 C 0.12 2.14 4.97 -4.04 -0.02 2.12 16 5 N -0.58 -11.39 2.28 -176.26 -0.40 -11.79 16 6 C 0.21 4.40 4.67 -5.19 -0.02 4.38 16 7 C -0.55 -12.68 7.48 -34.44 -0.26 -12.94 16 8 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.66 5.34 -17.82 -0.10 1.57 16 10 N -0.88 -21.52 13.29 55.43 0.74 -20.79 16 11 Si 0.90 18.76 29.54 -169.99 -5.02 13.74 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 15 C 0.56 11.09 6.11 -12.43 -0.08 11.02 16 16 O -0.57 -12.00 15.68 5.30 0.08 -11.92 16 17 C -0.13 -2.29 5.58 -104.94 -0.59 -2.87 16 18 C -0.08 -1.44 7.45 -39.17 -0.29 -1.73 16 19 C -0.12 -1.96 9.98 -39.56 -0.39 -2.36 16 20 C 0.09 1.44 6.45 -38.87 -0.25 1.18 16 21 C 0.06 0.86 6.54 -83.51 -0.55 0.31 16 22 C -0.07 -1.09 9.49 -39.06 -0.37 -1.46 16 23 N -0.65 -8.49 5.47 -9.68 -0.05 -8.54 16 24 C 0.49 6.49 7.94 -10.82 -0.09 6.41 16 25 O -0.52 -8.19 17.95 5.55 0.10 -8.09 16 26 C 0.05 0.54 7.16 36.03 0.26 0.80 16 27 O -0.30 -4.14 10.44 -19.26 -0.20 -4.34 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.83 7.05 -51.92 -0.37 0.46 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 36 H 0.08 1.36 7.20 -51.93 -0.37 0.98 16 37 H 0.03 0.79 7.97 -51.93 -0.41 0.38 16 38 H 0.07 1.44 4.04 -52.01 -0.21 1.23 16 39 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 40 H 0.21 4.40 3.09 -52.48 -0.16 4.24 16 41 H 0.14 2.20 8.06 -52.49 -0.42 1.77 16 42 H 0.14 1.98 7.93 -52.49 -0.42 1.57 16 43 H 0.41 4.66 8.89 -40.82 -0.36 4.30 16 44 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -27.20 369.08 -7.64 -34.84 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.07 Total: 10.02 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.38 Total: 1.31 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.28 Total: -41.12 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.02 Total: -24.35 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.20 -7.64 -34.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792521519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.651 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds