Wall clock time and date at job start Tue Mar 31 2020 16:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47258 * 2 1 4 4 C 1.53006 * 109.46492 * 119.99995 * 2 1 3 5 5 N 1.46502 * 109.46720 * 174.74718 * 4 2 1 6 6 C 1.46499 * 120.00048 * 275.56912 * 5 4 2 7 7 C 1.50702 * 109.46845 * 278.89895 * 6 5 4 8 8 H 1.08001 * 120.00149 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99983 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99745 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00306 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46914 * 89.99545 * 11 9 7 13 13 H 1.48488 * 109.47382 * 209.99976 * 11 9 7 14 14 H 1.48506 * 109.46838 * 329.99955 * 11 9 7 15 15 C 1.34779 * 119.99879 * 95.57040 * 5 4 2 16 16 O 1.21579 * 119.99938 * 6.15208 * 15 5 4 17 17 C 1.47613 * 119.99653 * 186.14471 * 15 5 4 18 18 C 1.39722 * 120.06008 * 329.79301 * 17 15 5 19 19 C 1.37836 * 120.11519 * 180.02562 * 18 17 15 20 20 C 1.38702 * 120.07137 * 359.97438 * 19 18 17 21 21 C 1.39674 * 120.10309 * 0.02738 * 20 19 18 22 22 C 1.38094 * 120.12026 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.24596 * 179.97438 * 21 20 19 24 24 C 1.35086 * 118.96550 * 15.79527 * 23 21 20 25 25 O 1.21287 * 120.14131 * 181.36803 * 24 23 21 26 26 C 1.50747 * 119.72653 * 1.16446 * 24 23 21 27 27 O 1.35848 * 120.50649 * 180.09238 * 20 19 18 28 28 H 1.08992 * 109.47001 * 300.00694 * 1 2 3 29 29 H 1.09006 * 109.46487 * 60.00322 * 1 2 3 30 30 H 1.08992 * 109.47268 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47299 * 239.99162 * 2 1 3 32 32 H 1.08996 * 109.47390 * 65.95508 * 3 2 1 33 33 H 1.09008 * 109.47273 * 185.95293 * 3 2 1 34 34 H 1.09000 * 109.47145 * 305.94635 * 3 2 1 35 35 H 1.09000 * 109.47391 * 54.74525 * 4 2 1 36 36 H 1.09002 * 109.46901 * 294.74137 * 4 2 1 37 37 H 1.08995 * 109.47351 * 38.89458 * 6 5 4 38 38 H 1.08999 * 109.47286 * 158.89965 * 6 5 4 39 39 H 0.97001 * 119.99786 * 180.02562 * 10 9 7 40 40 H 1.08007 * 119.94101 * 359.97438 * 18 17 15 41 41 H 1.07999 * 119.96670 * 179.97438 * 19 18 17 42 42 H 1.07996 * 120.15270 * 180.02562 * 22 21 20 43 43 H 0.97004 * 120.51976 * 195.52273 * 23 21 20 44 44 H 1.09001 * 109.53639 * 208.86225 * 26 24 23 45 45 H 1.08996 * 109.21479 * 89.00980 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4995 -0.8318 1.1878 6 6 4.1201 -1.9370 0.4533 7 6 4.1238 -3.1734 1.3149 8 1 3.7061 -3.1392 2.3103 9 6 4.6615 -4.3480 0.8329 10 7 5.1706 -4.3895 -0.3790 11 14 4.6668 -5.8804 1.9012 12 1 3.4169 -6.6485 1.6710 13 1 5.8377 -6.7238 1.5511 14 1 4.7498 -5.4869 3.3307 15 6 4.2712 0.0833 1.8071 16 8 3.7603 0.9348 2.5086 17 6 5.7368 0.0515 1.6337 18 6 6.3887 -1.1635 1.4084 19 6 7.7572 -1.1946 1.2468 20 6 8.4910 -0.0191 1.3070 21 6 7.8455 1.1990 1.5319 22 6 6.4747 1.2371 1.6947 23 7 8.6052 2.3767 1.5899 24 6 9.8702 2.3632 1.1161 25 8 10.5545 3.3627 1.1783 26 6 10.4294 1.0994 0.5140 27 8 9.8399 -0.0392 1.1471 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.7664 1.9246 0.9384 33 1 3.1249 1.4443 -0.1066 34 1 1.5924 1.9861 -0.8320 35 1 1.6017 -1.7182 1.2976 36 1 1.7554 -0.1559 2.1368 37 1 3.5541 -2.1309 -0.4578 38 1 5.1451 -1.6713 0.1947 39 1 5.5485 -5.2159 -0.7182 40 1 5.8194 -2.0802 1.3616 41 1 8.2588 -2.1352 1.0732 42 1 5.9750 2.1786 1.8682 43 1 8.2267 3.1892 1.9608 44 1 11.5098 1.0749 0.6564 45 1 10.2034 1.0795 -0.5521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792521519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:31 Heat of formation + Delta-G solvation = -78.907290 kcal Electronic energy + Delta-G solvation = -29244.140412 eV Core-core repulsion = 25227.002390 eV Total energy + Delta-G solvation = -4017.138021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56184 -41.23830 -39.78151 -38.39352 -37.47497 -36.54139 -35.58546 -34.18373 -31.87086 -31.06328 -29.44135 -29.00933 -28.00641 -27.16804 -25.32376 -24.51812 -23.93889 -22.03483 -20.88021 -20.31166 -19.67295 -19.10911 -18.50291 -18.29960 -17.43183 -17.24216 -17.08444 -16.36412 -16.32076 -16.00398 -15.72693 -15.58172 -15.22757 -15.19206 -14.93370 -14.60057 -14.37002 -14.21396 -13.98792 -13.83850 -13.64568 -13.10449 -12.96399 -12.80205 -12.69305 -12.55054 -12.43578 -12.25458 -12.10832 -12.03632 -11.82653 -11.62626 -11.51927 -11.42450 -11.16122 -10.79774 -10.50917 -9.79556 -9.38312 -9.01332 -8.19160 -6.34472 -0.25298 0.09396 1.11548 1.45440 1.50442 1.57674 1.60400 1.88156 2.13963 2.33574 2.46484 2.73186 2.88799 3.09916 3.50718 3.67748 3.97023 4.00096 4.06827 4.11607 4.17831 4.20746 4.24337 4.52307 4.66270 4.69461 4.70820 4.81055 4.84180 4.91084 4.95052 5.02472 5.05528 5.11248 5.22603 5.29034 5.36771 5.41763 5.42686 5.47811 5.63729 5.68790 5.71846 5.86049 6.03954 6.17326 6.58027 6.63701 6.82195 7.27469 7.39933 8.84261 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009600 B = 0.004578 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.036648 B = 6114.327994 C = 8440.468211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.586 5.586 6 C 0.221 3.779 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.039 3.961 10 N -0.902 5.902 11 Si 0.947 3.053 12 H -0.278 1.278 13 H -0.278 1.278 14 H -0.273 1.273 15 C 0.557 3.443 16 O -0.585 6.585 17 C -0.144 4.144 18 C -0.091 4.091 19 C -0.122 4.122 20 C 0.103 3.897 21 C 0.071 3.929 22 C -0.063 4.063 23 N -0.650 5.650 24 C 0.492 3.508 25 O -0.547 6.547 26 C 0.048 3.952 27 O -0.304 6.304 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.068 0.932 39 H 0.271 0.729 40 H 0.188 0.812 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.422 0.578 44 H 0.174 0.826 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 7.394 -1.415 8.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 C -0.187 4.187 4 C -0.003 4.003 5 N -0.314 5.314 6 C 0.101 3.899 7 C -0.588 4.588 8 H 0.072 0.928 9 C -0.165 4.165 10 N -0.540 5.540 11 Si 0.773 3.227 12 H -0.204 1.204 13 H -0.203 1.203 14 H -0.197 1.197 15 C 0.347 3.653 16 O -0.469 6.469 17 C -0.148 4.148 18 C -0.109 4.109 19 C -0.140 4.140 20 C 0.056 3.944 21 C -0.024 4.024 22 C -0.085 4.085 23 N -0.298 5.298 24 C 0.280 3.720 25 O -0.425 6.425 26 C -0.029 4.029 27 O -0.218 6.218 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.204 0.796 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.262 0.738 44 H 0.191 0.809 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.322 7.966 -1.205 8.715 hybrid contribution -0.343 -0.481 0.553 0.810 sum 2.979 7.485 -0.652 8.082 Atomic orbital electron populations 1.21702 0.92684 1.02317 1.02578 1.21444 0.97380 0.96293 0.97603 1.21675 0.99567 0.95810 1.01636 1.21546 0.79368 1.00795 0.98594 1.48030 1.06734 1.25973 1.50697 1.20047 0.95534 0.83112 0.91236 1.21523 1.40616 0.95321 1.01375 0.92798 1.25496 0.94242 1.00848 0.95878 1.69987 1.38516 1.28785 1.16692 0.85718 0.77880 0.79780 0.79365 1.20352 1.20326 1.19742 1.18292 0.86893 0.80854 0.79295 1.90653 1.75586 1.39640 1.40999 1.19743 0.93266 0.94388 1.07378 1.23088 0.94813 1.00863 0.92128 1.20651 0.92638 0.97387 1.03370 1.18901 0.82907 0.92355 1.00226 1.17636 0.91249 0.85634 1.07857 1.20570 0.90513 0.98538 0.98854 1.43655 1.13576 1.12187 1.60364 1.21954 0.80935 0.91623 0.77481 1.90788 1.58379 1.36808 1.56531 1.23530 1.01522 0.78797 0.99092 1.86225 1.16859 1.42085 1.76632 0.92131 0.91189 0.92231 0.92080 0.93135 0.95273 0.91415 0.90857 0.90997 0.96637 0.91508 0.91918 0.79587 0.83170 0.83570 0.73780 0.80851 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.19 71.98 0.66 -2.49 16 2 C -0.11 -3.23 3.12 -10.79 -0.03 -3.26 16 3 C -0.13 -3.82 8.22 71.98 0.59 -3.23 16 4 C 0.12 4.26 4.97 86.38 0.43 4.69 16 5 N -0.59 -23.62 2.28 -829.82 -1.89 -25.51 16 6 C 0.22 9.76 4.67 85.63 0.40 10.16 16 7 C -0.55 -26.17 7.48 25.60 0.19 -25.98 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 9 C 0.04 1.83 5.34 84.66 0.45 2.28 16 10 N -0.90 -44.65 13.29 21.45 0.28 -44.36 16 11 Si 0.95 38.63 29.54 68.60 2.03 40.65 16 12 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 13 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 C 0.56 22.58 6.11 86.72 0.53 23.11 16 16 O -0.59 -25.19 15.68 -3.97 -0.06 -25.25 16 17 C -0.14 -5.30 5.58 -20.07 -0.11 -5.42 16 18 C -0.09 -3.40 7.45 22.53 0.17 -3.23 16 19 C -0.12 -3.92 9.98 22.29 0.22 -3.70 16 20 C 0.10 2.97 6.45 22.73 0.15 3.12 16 21 C 0.07 1.98 6.54 38.10 0.25 2.23 16 22 C -0.06 -1.96 9.49 22.61 0.21 -1.75 16 23 N -0.65 -15.50 5.47 -302.77 -1.66 -17.15 16 24 C 0.49 11.73 7.94 87.62 0.70 12.43 16 25 O -0.55 -15.86 17.95 -3.05 -0.05 -15.92 16 26 C 0.05 0.87 7.16 71.25 0.51 1.38 16 27 O -0.30 -7.50 10.44 -91.84 -0.96 -8.46 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.97 7.98 -2.38 -0.02 1.95 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.03 0.96 7.05 -2.38 -0.02 0.94 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 2.64 8.11 -2.39 -0.02 2.62 16 36 H 0.07 2.61 7.20 -2.39 -0.02 2.59 16 37 H 0.02 0.74 7.97 -2.39 -0.02 0.72 16 38 H 0.07 3.01 4.04 -2.47 -0.01 3.00 16 39 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 40 H 0.19 8.03 3.09 -2.91 -0.01 8.02 16 41 H 0.15 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.15 4.15 7.93 -2.91 -0.02 4.13 16 43 H 0.42 8.69 8.89 -92.71 -0.82 7.87 16 44 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -58.20 369.08 3.21 -54.99 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.21 Total: 30.66 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.32 Total: 10.35 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -3.27 Total: -87.03 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -1.08 Total: -49.62 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -58.20 3.21 -54.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792521519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.920 kcal (2) G-P(sol) polarization free energy of solvation -58.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds