Wall clock time and date at job start Tue Mar 31 2020 17:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46496 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.34867 * 126.87329 * 270.00422 * 4 3 2 6 6 O 1.21545 * 123.72656 * 0.03751 * 5 4 3 7 7 N 1.33790 * 112.50491 * 180.13646 * 5 4 3 8 8 C 1.46496 * 124.18418 * 179.87599 * 7 5 4 9 9 C 1.50701 * 109.47054 * 270.03953 * 8 7 5 10 10 C 1.38299 * 119.92980 * 269.72447 * 9 8 7 11 11 C 1.38101 * 120.06600 * 179.72366 * 10 9 8 12 12 C 1.38878 * 119.93371 * 0.54823 * 11 10 9 13 13 O 1.35749 * 120.07336 * 179.74713 * 12 11 10 14 14 C 1.34826 * 117.00317 * 174.43849 * 13 12 11 15 15 H 1.08002 * 119.99800 * 5.06084 * 14 13 12 16 16 C 1.38648 * 120.00030 * 185.05522 * 14 13 12 17 17 N 1.31560 * 120.00226 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47462 * 89.99727 * 18 16 14 20 20 H 1.48501 * 109.47684 * 209.99794 * 18 16 14 21 21 H 1.48500 * 109.47179 * 329.99559 * 18 16 14 22 22 C 1.38882 * 119.86059 * 359.72177 * 12 11 10 23 23 C 1.38096 * 119.92892 * 0.02562 * 22 12 11 24 24 C 1.34773 * 111.64052 * 359.90772 * 7 5 4 25 25 O 1.21231 * 127.15654 * 180.02562 * 24 7 5 26 26 C 1.47308 * 126.69125 * 90.00165 * 4 3 2 27 27 H 1.08998 * 110.60156 * 61.26640 * 26 4 3 28 28 C 1.53006 * 110.60068 * 298.48149 * 26 4 3 29 29 H 1.09006 * 109.46613 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47196 * 299.99337 * 1 2 3 31 31 H 1.08993 * 109.47297 * 60.00250 * 1 2 3 32 32 H 1.09002 * 109.47538 * 240.00141 * 2 1 3 33 33 H 1.09002 * 109.47215 * 119.99976 * 2 1 3 34 34 H 1.09007 * 109.46765 * 60.00452 * 3 2 1 35 35 H 1.09002 * 109.47116 * 300.00037 * 3 2 1 36 36 H 1.09004 * 109.46906 * 30.03560 * 8 7 5 37 37 H 1.08995 * 109.47391 * 150.03961 * 8 7 5 38 38 H 1.07995 * 119.96505 * 359.97438 * 10 9 8 39 39 H 1.08004 * 120.03238 * 180.27003 * 11 10 9 40 40 H 0.96992 * 120.00703 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.03703 * 180.02562 * 22 12 11 42 42 H 1.08001 * 119.96637 * 180.02562 * 23 22 12 43 43 H 1.09004 * 109.46766 * 302.12713 * 28 26 4 44 44 H 1.08999 * 109.47545 * 182.12940 * 28 26 4 45 45 H 1.08992 * 109.47110 * 62.12308 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3137 1.4427 1.0798 6 8 3.9095 1.4421 2.2261 7 7 5.6099 1.4457 0.7484 8 6 6.7076 1.4491 1.7186 9 6 7.0798 2.8711 2.0509 10 6 8.0480 3.5224 1.3086 11 6 8.3872 4.8274 1.6071 12 6 7.7631 5.4820 2.6610 13 8 8.0981 6.7630 2.9602 14 6 7.3750 7.3770 3.9183 15 1 6.6257 6.8252 4.4663 16 6 7.5936 8.7169 4.2002 17 7 6.8885 9.3159 5.1354 18 14 8.8893 9.6715 3.2520 19 1 8.2717 10.2819 2.0472 20 1 9.4483 10.7411 4.1173 21 1 9.9781 8.7507 2.8375 22 6 6.7952 4.8233 3.4081 23 6 6.4567 3.5201 3.1013 24 6 5.7811 1.4458 -0.5884 25 8 6.8325 1.4477 -1.1920 26 6 4.3856 1.4425 -1.1802 27 1 4.2217 2.3370 -1.7810 28 6 4.1600 0.1835 -2.0199 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 6.3919 0.9346 2.6262 37 1 7.5707 0.9377 1.2925 38 1 8.5364 3.0113 0.4922 39 1 9.1403 5.3370 1.0243 40 1 7.0411 10.2533 5.3324 41 1 6.3078 5.3297 4.2280 42 1 5.7038 3.0074 3.6816 43 1 4.3403 -0.6994 -1.4066 44 1 4.8461 0.1838 -2.8669 45 1 3.1329 0.1691 -2.3844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794777963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:18 Heat of formation + Delta-G solvation = -45.370820 kcal Electronic energy + Delta-G solvation = -28483.840063 eV Core-core repulsion = 24468.156292 eV Total energy + Delta-G solvation = -4015.683771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.45223 -39.23268 -38.66392 -37.29960 -36.54702 -35.62187 -33.88851 -32.44454 -31.03196 -30.57261 -30.24813 -27.43424 -25.90123 -24.99571 -24.46495 -22.36488 -22.16099 -21.59929 -20.92068 -20.04121 -17.92220 -17.58452 -17.39465 -17.13611 -16.43944 -15.95972 -15.39452 -14.99716 -14.94383 -14.86530 -14.56067 -14.31650 -14.05836 -13.83100 -13.77405 -13.55069 -13.30270 -12.93962 -12.77549 -12.65849 -12.54977 -12.35521 -12.25896 -12.18343 -11.79094 -11.65430 -11.50649 -11.30695 -11.13686 -10.87612 -10.70143 -10.63740 -10.19865 -10.15512 -9.67790 -9.41697 -9.16561 -8.91039 -8.28791 -7.42495 -6.45581 -4.12247 1.58116 1.76360 2.12289 2.30378 2.88148 3.01598 3.19901 3.23496 3.38083 3.84433 4.20474 4.33072 4.44469 4.46380 4.61003 4.69014 4.80479 4.86834 4.89506 5.05876 5.06874 5.14125 5.20178 5.25382 5.25738 5.41913 5.44708 5.55103 5.57951 5.67838 5.68588 5.75174 5.77248 5.87889 5.94923 6.12413 6.26664 6.36056 6.53365 6.76786 6.98699 7.07139 7.21474 7.28120 7.32444 7.57065 7.76762 7.99436 8.06610 8.89098 9.50401 10.61764 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002829 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.031783 B = 9896.619271 C =10661.314697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.152 3.848 4 N -0.626 5.626 5 C 0.700 3.300 6 O -0.536 6.536 7 N -0.568 5.568 8 C 0.176 3.824 9 C -0.215 4.215 10 C -0.052 4.052 11 C -0.198 4.198 12 C 0.169 3.831 13 O -0.213 6.213 14 C -0.390 4.390 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.226 4.226 23 C -0.044 4.044 24 C 0.526 3.474 25 O -0.469 6.469 26 C 0.088 3.912 27 H 0.124 0.876 28 C -0.148 4.148 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.280 0.720 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.268 -19.395 -14.173 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.031 3.969 4 N -0.366 5.366 5 C 0.403 3.597 6 O -0.409 6.409 7 N -0.313 5.313 8 C 0.057 3.943 9 C -0.217 4.217 10 C -0.071 4.071 11 C -0.217 4.217 12 C 0.116 3.884 13 O -0.118 6.118 14 C -0.466 4.466 15 H 0.125 0.875 16 C -0.139 4.139 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.245 4.245 23 C -0.063 4.063 24 C 0.313 3.687 25 O -0.338 6.338 26 C -0.019 4.019 27 H 0.141 0.859 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.152 0.848 42 H 0.133 0.867 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.847 -19.017 -13.752 25.081 hybrid contribution 0.358 0.666 -0.170 0.775 sum -8.490 -18.351 -13.922 24.549 Atomic orbital electron populations 1.21691 0.94767 1.02141 1.02178 1.22056 0.96392 0.97039 1.02992 1.21381 0.74375 0.97277 1.03883 1.47849 1.06053 1.77656 1.05008 1.16020 0.80842 0.77485 0.85354 1.90967 1.76985 1.54418 1.18565 1.46723 1.08048 1.67438 1.09057 1.20396 0.87003 0.95548 0.91401 1.19388 1.04024 0.96271 1.02016 1.20580 0.95712 0.93415 0.97413 1.20191 1.05766 0.95554 1.00173 1.19191 0.92101 0.84925 0.92217 1.83569 1.53653 1.21620 1.52927 1.20800 1.18561 0.94538 1.12691 0.87512 1.24481 0.97686 0.95524 0.96254 1.69644 1.39299 1.12493 1.29965 0.86177 0.81792 0.79371 0.79558 1.19840 1.20686 1.18308 1.21273 1.03060 0.95791 1.04371 1.20774 0.96553 0.93807 0.95125 1.20783 0.91038 0.74436 0.82431 1.90781 1.30869 1.46058 1.66142 1.22103 0.87568 1.02677 0.89544 0.85889 1.21974 1.03607 0.95176 0.99824 0.92338 0.92252 0.92497 0.91436 0.91315 0.89195 0.89711 0.88600 0.88771 0.86558 0.86387 0.90952 0.84821 0.86660 0.91606 0.89930 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.15 -0.95 6.13 -26.73 -0.16 -1.11 16 3 C 0.15 1.17 6.00 -4.04 -0.02 1.14 16 4 N -0.63 -6.39 2.76 -172.29 -0.48 -6.87 16 5 C 0.70 9.75 8.32 -87.71 -0.73 9.02 16 6 O -0.54 -9.10 17.17 5.33 0.09 -9.01 16 7 N -0.57 -7.71 2.59 -121.92 -0.32 -8.02 16 8 C 0.18 2.45 5.82 -5.20 -0.03 2.42 16 9 C -0.22 -3.70 5.47 -104.57 -0.57 -4.27 16 10 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 11 C -0.20 -4.01 9.99 -39.40 -0.39 -4.41 16 12 C 0.17 3.96 6.65 -39.11 -0.26 3.70 16 13 O -0.21 -5.68 8.59 0.06 0.00 -5.68 16 14 C -0.39 -11.09 9.95 30.88 0.31 -10.78 16 15 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 16 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 17 N -0.88 -25.41 13.96 55.48 0.77 -24.64 16 18 Si 0.91 21.73 28.62 -169.99 -4.86 16.87 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.23 -5.02 9.17 -39.40 -0.36 -5.38 16 23 C -0.04 -0.84 9.69 -39.61 -0.38 -1.22 16 24 C 0.53 6.52 7.65 -10.55 -0.08 6.44 16 25 O -0.47 -6.76 17.76 5.60 0.10 -6.66 16 26 C 0.09 0.78 4.04 -68.20 -0.28 0.50 16 27 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 28 C -0.15 -0.88 8.65 37.16 0.32 -0.56 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.37 6.36 -51.93 -0.33 0.04 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.81 8.04 -51.92 -0.42 0.40 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.27 7.80 -51.93 -0.41 0.87 16 37 H 0.09 1.16 7.94 -51.93 -0.41 0.75 16 38 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 40 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.13 3.13 5.64 -52.49 -0.30 2.84 16 42 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.32 7.16 -51.93 -0.37 -0.05 16 LS Contribution 381.39 15.07 5.75 5.75 Total: -1.00 -32.73 381.39 -8.00 -40.73 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.30 Total: 2.07 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.76 Total: -4.54 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -0.02 Total: -39.52 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.19 Total: -21.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.86 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.73 -8.00 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794777963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.641 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds