Wall clock time and date at job start Tue Mar 31 2020 17:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 N 1.46496 * 109.47214 * 179.97438 * 3 2 1 5 5 C 1.34867 * 126.87329 * 270.00422 * 4 3 2 6 6 O 1.21545 * 123.72656 * 0.03751 * 5 4 3 7 7 N 1.33790 * 112.50491 * 180.13646 * 5 4 3 8 8 C 1.46496 * 124.18418 * 179.87599 * 7 5 4 9 9 C 1.50701 * 109.47054 * 270.03953 * 8 7 5 10 10 C 1.38299 * 119.92980 * 269.72447 * 9 8 7 11 11 C 1.38101 * 120.06600 * 179.72366 * 10 9 8 12 12 C 1.38878 * 119.93371 * 0.54823 * 11 10 9 13 13 O 1.35749 * 120.07336 * 179.74713 * 12 11 10 14 14 C 1.34826 * 117.00317 * 174.43849 * 13 12 11 15 15 H 1.08002 * 119.99800 * 5.06084 * 14 13 12 16 16 C 1.38648 * 120.00030 * 185.05522 * 14 13 12 17 17 N 1.31560 * 120.00226 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00286 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47462 * 89.99727 * 18 16 14 20 20 H 1.48501 * 109.47684 * 209.99794 * 18 16 14 21 21 H 1.48500 * 109.47179 * 329.99559 * 18 16 14 22 22 C 1.38882 * 119.86059 * 359.72177 * 12 11 10 23 23 C 1.38096 * 119.92892 * 0.02562 * 22 12 11 24 24 C 1.34773 * 111.64052 * 359.90772 * 7 5 4 25 25 O 1.21231 * 127.15654 * 180.02562 * 24 7 5 26 26 C 1.47308 * 126.69125 * 90.00165 * 4 3 2 27 27 H 1.08998 * 110.60156 * 61.26640 * 26 4 3 28 28 C 1.53006 * 110.60068 * 298.48149 * 26 4 3 29 29 H 1.09006 * 109.46613 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47196 * 299.99337 * 1 2 3 31 31 H 1.08993 * 109.47297 * 60.00250 * 1 2 3 32 32 H 1.09002 * 109.47538 * 240.00141 * 2 1 3 33 33 H 1.09002 * 109.47215 * 119.99976 * 2 1 3 34 34 H 1.09007 * 109.46765 * 60.00452 * 3 2 1 35 35 H 1.09002 * 109.47116 * 300.00037 * 3 2 1 36 36 H 1.09004 * 109.46906 * 30.03560 * 8 7 5 37 37 H 1.08995 * 109.47391 * 150.03961 * 8 7 5 38 38 H 1.07995 * 119.96505 * 359.97438 * 10 9 8 39 39 H 1.08004 * 120.03238 * 180.27003 * 11 10 9 40 40 H 0.96992 * 120.00703 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.03703 * 180.02562 * 22 12 11 42 42 H 1.08001 * 119.96637 * 180.02562 * 23 22 12 43 43 H 1.09004 * 109.46766 * 302.12713 * 28 26 4 44 44 H 1.08999 * 109.47545 * 182.12940 * 28 26 4 45 45 H 1.08992 * 109.47110 * 62.12308 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.3137 1.4427 1.0798 6 8 3.9095 1.4421 2.2261 7 7 5.6099 1.4457 0.7484 8 6 6.7076 1.4491 1.7186 9 6 7.0798 2.8711 2.0509 10 6 8.0480 3.5224 1.3086 11 6 8.3872 4.8274 1.6071 12 6 7.7631 5.4820 2.6610 13 8 8.0981 6.7630 2.9602 14 6 7.3750 7.3770 3.9183 15 1 6.6257 6.8252 4.4663 16 6 7.5936 8.7169 4.2002 17 7 6.8885 9.3159 5.1354 18 14 8.8893 9.6715 3.2520 19 1 8.2717 10.2819 2.0472 20 1 9.4483 10.7411 4.1173 21 1 9.9781 8.7507 2.8375 22 6 6.7952 4.8233 3.4081 23 6 6.4567 3.5201 3.1013 24 6 5.7811 1.4458 -0.5884 25 8 6.8325 1.4477 -1.1920 26 6 4.3856 1.4425 -1.1802 27 1 4.2217 2.3370 -1.7810 28 6 4.1600 0.1835 -2.0199 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8901 35 1 1.6766 1.9564 -0.8900 36 1 6.3919 0.9346 2.6262 37 1 7.5707 0.9377 1.2925 38 1 8.5364 3.0113 0.4922 39 1 9.1403 5.3370 1.0243 40 1 7.0411 10.2533 5.3324 41 1 6.3078 5.3297 4.2280 42 1 5.7038 3.0074 3.6816 43 1 4.3403 -0.6994 -1.4066 44 1 4.8461 0.1838 -2.8669 45 1 3.1329 0.1691 -2.3844 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794777963.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:17 Heat of formation + Delta-G solvation = -64.474902 kcal Electronic energy + Delta-G solvation = -28484.668478 eV Core-core repulsion = 24468.156292 eV Total energy + Delta-G solvation = -4016.512186 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.43375 -40.98014 -39.70638 -38.78526 -37.65774 -36.67766 -34.75260 -34.41508 -32.06667 -31.86399 -31.60579 -28.58778 -27.35472 -26.22259 -25.54650 -23.84169 -23.01684 -22.62041 -22.17221 -21.14656 -19.87834 -19.21747 -18.50193 -18.19962 -17.49067 -16.88687 -16.68212 -16.40443 -16.20130 -15.84345 -15.76945 -15.63070 -15.46187 -15.37831 -15.11009 -14.49561 -14.45876 -14.31187 -14.15001 -13.94648 -13.47211 -13.22126 -13.19523 -13.05651 -12.90587 -12.87505 -12.69200 -12.58855 -12.48127 -12.15603 -12.00175 -11.94878 -11.47414 -11.36300 -11.15603 -10.95026 -10.87576 -9.97717 -9.92287 -9.18040 -8.54721 -6.28725 0.33401 0.46419 0.61604 1.18912 1.29300 1.34085 1.50062 1.92971 2.01664 2.24819 2.70008 2.94414 3.00362 3.08240 3.60378 3.83280 3.87925 3.89298 4.03607 4.05901 4.13684 4.18653 4.34905 4.36305 4.41558 4.50757 4.63394 4.65333 4.68235 4.73793 4.75495 4.85724 4.94273 4.97649 5.12768 5.13885 5.24518 5.26643 5.31965 5.38648 5.46907 5.55077 5.62359 5.70928 5.82144 6.11866 6.12306 6.35835 6.78543 7.03253 7.49513 8.56857 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002829 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.031783 B = 9896.619271 C =10661.314697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.616 5.616 5 C 0.691 3.309 6 O -0.577 6.577 7 N -0.574 5.574 8 C 0.175 3.825 9 C -0.188 4.188 10 C -0.043 4.043 11 C -0.192 4.192 12 C 0.134 3.866 13 O -0.238 6.238 14 C -0.404 4.404 15 H 0.079 0.921 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.973 3.027 19 H -0.264 1.264 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.239 4.239 23 C -0.046 4.046 24 C 0.522 3.478 25 O -0.488 6.488 26 C 0.094 3.906 27 H 0.147 0.853 28 C -0.141 4.141 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.286 0.714 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 -21.424 -17.932 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.025 3.975 4 N -0.354 5.354 5 C 0.393 3.607 6 O -0.454 6.454 7 N -0.318 5.318 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.061 4.061 11 C -0.211 4.211 12 C 0.084 3.916 13 O -0.145 6.145 14 C -0.480 4.480 15 H 0.096 0.904 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.190 1.190 21 H -0.186 1.186 22 C -0.259 4.259 23 C -0.065 4.065 24 C 0.310 3.690 25 O -0.359 6.359 26 C -0.013 4.013 27 H 0.165 0.835 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.152 0.848 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.855 -21.098 -17.566 28.846 hybrid contribution 0.236 0.930 0.885 1.306 sum -8.619 -20.168 -16.680 27.555 Atomic orbital electron populations 1.21679 0.93724 1.02597 1.02537 1.21978 0.97178 0.95931 1.02576 1.21661 0.72858 0.98366 1.04606 1.48045 1.06846 1.76081 1.04468 1.16276 0.81253 0.77500 0.85647 1.90941 1.77568 1.56482 1.20364 1.46678 1.07837 1.67679 1.09649 1.20425 0.88396 0.93115 0.92583 1.19815 1.01797 0.97633 0.99671 1.20925 0.95164 0.92339 0.97717 1.20508 1.05302 0.96405 0.98902 1.19671 0.93599 0.84436 0.93919 1.83516 1.54500 1.23102 1.53380 1.20706 1.18731 0.95088 1.13454 0.90356 1.25318 0.99879 0.96265 0.97241 1.69728 1.41365 1.13203 1.31824 0.85193 0.78872 0.77997 0.78507 1.18913 1.18984 1.18580 1.21237 1.03420 0.97117 1.04100 1.20872 0.96937 0.92661 0.96044 1.21372 0.92318 0.73471 0.81813 1.90773 1.31974 1.46963 1.66238 1.22342 0.84653 1.05288 0.88982 0.83545 1.21999 1.05502 0.93065 0.99314 0.91861 0.93240 0.90816 0.89691 0.93835 0.91139 0.86330 0.87971 0.86237 0.83268 0.84793 0.90390 0.87418 0.85973 0.92186 0.88965 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.14 -1.48 6.13 30.59 0.19 -1.29 16 3 C 0.14 1.89 6.00 86.38 0.52 2.41 16 4 N -0.62 -11.08 2.76 -817.24 -2.25 -13.34 16 5 C 0.69 18.32 8.32 179.33 1.49 19.82 16 6 O -0.58 -19.62 17.17 -3.86 -0.07 -19.68 16 7 N -0.57 -14.30 2.59 -776.90 -2.01 -16.31 16 8 C 0.17 4.45 5.82 85.63 0.50 4.95 16 9 C -0.19 -6.13 5.47 -19.83 -0.11 -6.23 16 10 C -0.04 -1.41 9.69 22.25 0.22 -1.19 16 11 C -0.19 -7.58 9.99 22.39 0.22 -7.35 16 12 C 0.13 6.45 6.65 22.58 0.15 6.60 16 13 O -0.24 -13.18 8.59 -22.69 -0.19 -13.37 16 14 C -0.40 -24.29 9.95 67.92 0.68 -23.62 16 15 H 0.08 4.99 5.44 -2.91 -0.02 4.97 16 16 C 0.01 0.69 5.49 84.83 0.47 1.16 16 17 N -0.92 -55.71 13.96 21.61 0.30 -55.41 16 18 Si 0.97 45.73 28.62 68.60 1.96 47.69 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 22 C -0.24 -11.19 9.17 22.39 0.21 -10.98 16 23 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 24 C 0.52 11.30 7.65 87.94 0.67 11.97 16 25 O -0.49 -12.42 17.76 -2.88 -0.05 -12.47 16 26 C 0.09 1.30 4.04 44.37 0.18 1.48 16 27 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 28 C -0.14 -1.07 8.65 71.98 0.62 -0.45 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.62 6.36 -2.39 -0.02 0.60 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.23 8.04 -2.38 -0.02 1.21 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.10 2.53 7.80 -2.39 -0.02 2.51 16 37 H 0.12 2.50 7.94 -2.39 -0.02 2.48 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.13 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.29 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.11 5.55 5.64 -2.91 -0.02 5.53 16 42 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 0.30 7.16 -2.39 -0.02 0.29 16 Total: -1.00 -75.68 381.39 5.62 -70.06 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.00 Total: 17.66 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.93 Total: -4.83 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -3.96 Total: -85.05 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.31 Total: -45.52 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.96 Total: 47.69 kcal Total: -75.68 5.62 -70.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794777963.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds