Wall clock time and date at job start Tue Mar 31 2020 17:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 116.99602 * 2 1 4 4 C 1.38754 * 120.05688 * 0.25006 * 3 2 1 5 5 C 1.38114 * 119.94392 * 180.31541 * 4 3 2 6 6 C 1.38288 * 120.05665 * 359.68845 * 5 4 3 7 7 C 1.38243 * 120.11323 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05123 * 0.02978 * 7 6 5 9 9 C 1.50704 * 120.02706 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46806 * 264.99605 * 9 8 7 11 11 C 1.50701 * 119.99997 * 273.13296 * 10 9 8 12 12 C 1.32997 * 120.00105 * 93.13107 * 10 9 8 13 13 C 1.47101 * 120.00014 * 1.96093 * 12 10 9 14 14 O 1.21616 * 119.99703 * 353.97045 * 13 12 10 15 15 N 1.34780 * 120.00292 * 173.70501 * 13 12 10 16 16 C 1.46494 * 119.99970 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.46813 * 179.97438 * 16 15 13 18 18 O 1.21289 * 120.00155 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99973 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00113 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00427 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99956 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99921 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00339 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47128 * 90.00257 * 24 22 20 26 26 H 1.48499 * 109.47259 * 210.00429 * 24 22 20 27 27 H 1.48503 * 109.46807 * 330.00551 * 24 22 20 28 28 H 1.08998 * 109.46406 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47546 * 299.99690 * 1 2 3 30 30 H 1.09001 * 109.47113 * 60.00130 * 1 2 3 31 31 H 1.08003 * 120.02627 * 0.02913 * 4 3 2 32 32 H 1.08000 * 119.97760 * 179.70402 * 5 4 3 33 33 H 1.08004 * 119.94875 * 180.02562 * 6 5 4 34 34 H 1.07994 * 119.97427 * 180.02562 * 7 6 5 35 35 H 1.08998 * 109.47431 * 144.99567 * 9 8 7 36 36 H 1.09001 * 109.46755 * 24.99314 * 9 8 7 37 37 H 1.08998 * 109.46949 * 269.99613 * 11 10 9 38 38 H 1.08993 * 109.47229 * 30.00015 * 11 10 9 39 39 H 1.09002 * 109.47052 * 150.00069 * 11 10 9 40 40 H 1.08006 * 120.00025 * 181.95449 * 12 10 9 41 41 H 0.97001 * 119.99621 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47386 * 299.99561 * 16 15 13 43 43 H 1.08995 * 109.47337 * 59.99553 * 16 15 13 44 44 H 0.97006 * 120.00009 * 0.02562 * 19 17 16 45 45 H 0.97003 * 120.00299 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0052 5 6 1.9206 3.6048 -0.0014 6 6 3.3017 3.6759 -0.0067 7 6 4.0559 2.5173 -0.0059 8 6 3.4310 1.2850 -0.0005 9 6 4.2537 0.0223 -0.0003 10 6 4.4189 -0.4697 -1.4150 11 6 3.3757 -1.3690 -2.0266 12 6 5.4853 -0.1104 -2.1239 13 6 6.5249 0.7321 -1.5128 14 8 6.3588 1.1906 -0.3987 15 7 7.6636 0.9916 -2.1854 16 6 8.6986 1.8311 -1.5770 17 6 9.8604 1.9641 -2.5277 18 8 9.8273 1.4117 -3.6069 19 7 10.9363 2.6970 -2.1786 20 6 11.9934 2.8177 -3.0431 21 1 11.9639 2.3258 -4.0041 22 6 13.1027 3.5729 -2.6830 23 7 14.1158 3.6889 -3.5119 24 14 13.1535 4.4243 -1.0211 25 1 13.7577 3.5130 -0.0162 26 1 13.9703 5.6603 -1.1229 27 1 11.7728 4.7765 -0.6030 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2127 2.3203 0.0098 32 1 1.3338 4.5114 -0.0021 33 1 3.7920 4.6382 -0.0114 34 1 5.1342 2.5755 -0.0097 35 1 3.7490 -0.7401 0.5930 36 1 5.2341 0.2276 0.4298 37 1 3.6318 -2.4098 -1.8283 38 1 2.4022 -1.1449 -1.5908 39 1 3.3388 -1.2028 -3.1033 40 1 5.5881 -0.4372 -3.1481 41 1 7.7978 0.6224 -3.0724 42 1 8.2876 2.8180 -1.3647 43 1 9.0396 1.3722 -0.6491 44 1 10.9629 3.1386 -1.3152 45 1 14.8901 4.2164 -3.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:20 Heat of formation + Delta-G solvation = -56.034851 kcal Electronic energy + Delta-G solvation = -27783.845070 eV Core-core repulsion = 23767.698871 eV Total energy + Delta-G solvation = -4016.146198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.57705 -39.71874 -38.43112 -37.46855 -35.75595 -34.46185 -33.74711 -31.88675 -31.77185 -30.16107 -28.94961 -27.81839 -27.11782 -26.45644 -24.30287 -22.20919 -21.88725 -20.76720 -19.77189 -19.12991 -18.39203 -17.97049 -17.04776 -16.39265 -16.07173 -15.91775 -15.59716 -15.40627 -15.30983 -14.86101 -14.50647 -14.26525 -14.20349 -13.81034 -13.58588 -13.34854 -13.16026 -12.92934 -12.82628 -12.52857 -12.43275 -12.22999 -12.17314 -12.11421 -11.70379 -11.66224 -11.28370 -11.23699 -11.21896 -10.86719 -10.64872 -10.06634 -9.70212 -9.31213 -9.16148 -8.82034 -8.77507 -8.71162 -8.30768 -8.21181 -6.40997 -3.93613 1.21238 1.38204 1.48468 2.99025 3.03681 3.07286 3.11882 3.34584 3.42275 3.57232 3.72674 4.03168 4.54479 4.62837 4.72546 4.82578 4.84817 4.85865 4.90783 5.07204 5.13725 5.13919 5.25774 5.29668 5.38285 5.46420 5.49510 5.63165 5.69134 5.70893 5.78023 5.81548 5.84402 5.99622 6.13399 6.22417 6.37475 6.45067 6.55182 6.66040 6.69716 6.93148 7.25142 7.44068 7.80797 8.00498 8.41883 8.49856 8.81567 9.29549 9.63303 10.71170 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020387 B = 0.002367 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.113653 B =11825.474353 C =12755.102517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.215 4.215 5 C -0.089 4.089 6 C -0.161 4.161 7 C -0.070 4.070 8 C -0.091 4.091 9 C -0.079 4.079 10 C -0.017 4.017 11 C -0.132 4.132 12 C -0.229 4.229 13 C 0.547 3.453 14 O -0.546 6.546 15 N -0.702 5.702 16 C 0.106 3.894 17 C 0.437 3.563 18 O -0.579 6.579 19 N -0.577 5.577 20 C -0.310 4.310 21 H 0.121 0.879 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.267 1.267 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.412 0.588 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.374 0.626 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.102 -5.440 8.942 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.076 3.924 4 C -0.234 4.234 5 C -0.107 4.107 6 C -0.179 4.179 7 C -0.088 4.088 8 C -0.092 4.092 9 C -0.115 4.115 10 C -0.019 4.019 11 C -0.188 4.188 12 C -0.250 4.250 13 C 0.338 3.662 14 O -0.430 6.430 15 N -0.354 5.354 16 C -0.022 4.022 17 C 0.223 3.777 18 O -0.463 6.463 19 N -0.214 5.214 20 C -0.438 4.438 21 H 0.139 0.861 22 C -0.160 4.160 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.174 0.826 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.251 0.749 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.207 0.793 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.875 -5.578 8.903 28.855 hybrid contribution -0.028 0.844 0.660 1.072 sum -26.903 -4.734 9.563 28.942 Atomic orbital electron populations 1.23018 0.79003 1.03660 1.01197 1.86064 1.20774 1.27010 1.88789 1.18931 0.91920 0.84009 0.97520 1.21113 0.99557 0.92486 1.10212 1.20907 0.94821 0.96741 0.98270 1.21184 0.93793 0.98804 1.04167 1.21751 1.02215 0.90417 0.94402 1.18989 0.89426 0.95566 1.05221 1.20323 1.04016 0.93681 0.93517 1.22368 0.92606 0.91705 0.95185 1.21088 0.98531 0.98542 1.00628 1.22335 0.96331 1.05074 1.01241 1.18539 0.81865 0.80626 0.85162 1.90400 1.79590 1.53196 1.19785 1.45658 1.16900 1.51271 1.21589 1.20967 0.88607 0.96200 0.96389 1.19672 0.84555 0.84669 0.88764 1.90543 1.80928 1.50682 1.24143 1.42129 1.16516 1.45077 1.17723 1.19438 0.93018 1.30559 1.00825 0.86101 1.25073 0.95384 0.97335 0.98169 1.69619 1.06587 1.39518 1.35605 0.86667 0.78746 0.80291 0.83758 1.19397 1.19993 1.19221 0.88428 0.92875 0.92855 0.85958 0.86302 0.86131 0.82580 0.91149 0.84523 0.90623 0.89890 0.91592 0.85569 0.74946 0.89717 0.89658 0.79257 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.05 7.47 -19.45 -0.15 -3.20 16 3 C 0.12 1.38 6.66 -39.22 -0.26 1.11 16 4 C -0.21 -2.19 9.04 -39.44 -0.36 -2.54 16 5 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.16 -1.88 10.04 -39.56 -0.40 -2.28 16 7 C -0.07 -0.93 9.31 -39.60 -0.37 -1.30 16 8 C -0.09 -1.16 5.13 -104.47 -0.54 -1.70 16 9 C -0.08 -0.98 4.71 -29.03 -0.14 -1.11 16 10 C -0.02 -0.19 5.35 -101.17 -0.54 -0.73 16 11 C -0.13 -1.18 10.04 36.01 0.36 -0.81 16 12 C -0.23 -2.80 9.63 -37.81 -0.36 -3.17 16 13 C 0.55 7.96 7.70 -12.66 -0.10 7.87 16 14 O -0.55 -8.47 9.53 5.26 0.05 -8.42 16 15 N -0.70 -10.95 5.52 -62.68 -0.35 -11.30 16 16 C 0.11 1.78 6.15 -5.20 -0.03 1.75 16 17 C 0.44 9.53 7.85 -10.98 -0.09 9.44 16 18 O -0.58 -14.59 15.24 5.55 0.08 -14.51 16 19 N -0.58 -13.32 5.09 -10.96 -0.06 -13.37 16 20 C -0.31 -8.52 10.16 -14.94 -0.15 -8.67 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 23 N -0.87 -24.94 13.96 55.50 0.77 -24.16 16 24 Si 0.88 18.92 27.74 -169.99 -4.71 14.21 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 30 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 31 H 0.12 0.94 6.30 -52.48 -0.33 0.61 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.16 2.26 5.03 -52.49 -0.26 1.99 16 35 H 0.07 0.81 7.69 -51.93 -0.40 0.41 16 36 H 0.14 1.92 4.76 -54.10 -0.26 1.66 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.75 5.82 -51.93 -0.30 0.45 16 39 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 40 H 0.13 1.32 8.05 -52.48 -0.42 0.90 16 41 H 0.41 6.51 7.42 -40.82 -0.30 6.21 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 45 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -31.98 371.04 -7.05 -39.03 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -5.82 Total: 17.34 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.47 Total: -1.21 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.37 Total: -48.84 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.01 Total: -26.12 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.21 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.98 -7.05 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.001 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds