Wall clock time and date at job start Tue Mar 31 2020 17:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99831 * 2 1 4 4 C 1.53000 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47063 * 300.00327 * 5 4 3 7 7 C 1.47203 * 109.46955 * 60.00036 * 5 4 3 8 8 N 4.83745 * 113.89090 * 28.78043 * 2 1 3 9 9 N 1.46494 * 109.47168 * 180.02562 * 5 4 3 10 10 C 1.34777 * 120.00138 * 179.97438 * 9 5 4 11 11 O 1.21282 * 119.99908 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00332 * 179.97438 * 10 9 5 13 13 C 1.50701 * 109.47420 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.92928 * 269.73009 * 13 12 10 15 15 C 1.38093 * 120.06663 * 179.72477 * 14 13 12 16 16 C 1.38880 * 119.93100 * 0.56456 * 15 14 13 17 17 O 1.35757 * 120.06973 * 179.68012 * 16 15 14 18 18 C 1.34832 * 116.99559 * 174.49040 * 17 16 15 19 19 H 1.07998 * 120.00420 * 5.05819 * 18 17 16 20 20 C 1.38654 * 119.99650 * 185.06026 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99978 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47401 * 90.00131 * 22 20 18 24 24 H 1.48505 * 109.46980 * 209.99768 * 22 20 18 25 25 H 1.48501 * 109.47410 * 329.99800 * 22 20 18 26 26 C 1.38878 * 119.86123 * 359.71138 * 16 15 14 27 27 C 1.38101 * 119.93284 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47261 * 59.99870 * 1 2 3 29 29 H 1.08992 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46768 * 299.99349 * 1 2 3 31 31 H 1.09002 * 109.46613 * 60.00498 * 3 2 1 32 32 H 1.08992 * 109.46936 * 300.00373 * 3 2 1 33 33 H 1.09002 * 109.46749 * 59.99954 * 4 3 2 34 34 H 1.09001 * 109.47142 * 300.00471 * 4 3 2 35 35 H 1.08994 * 109.47107 * 59.99622 * 6 5 4 36 36 H 1.08998 * 109.47175 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46927 * 299.99620 * 6 5 4 38 38 H 0.97007 * 120.00222 * 0.02562 * 9 5 4 39 39 H 1.09001 * 109.47065 * 300.00597 * 12 10 9 40 40 H 1.09002 * 109.47156 * 60.00273 * 12 10 9 41 41 H 1.08005 * 119.96338 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03730 * 180.27209 * 15 14 13 43 43 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03799 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96732 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 6 3.7067 3.3421 -1.2479 7 6 3.7228 3.3126 1.2032 8 7 3.3882 3.8766 2.1295 9 7 5.6181 2.4669 0.0013 10 6 6.3821 3.5772 0.0013 11 8 5.8605 4.6721 0.0018 12 6 7.8844 3.4583 0.0019 13 6 8.4973 4.8350 0.0024 14 6 8.7836 5.4633 -1.1960 15 6 9.3400 6.7272 -1.1988 16 6 9.6230 7.3625 0.0033 17 8 10.1760 8.6023 0.0037 18 6 10.3194 9.2081 1.1998 19 1 10.0764 8.6756 2.1074 20 6 10.7789 10.5147 1.2644 21 7 11.0754 11.1631 0.1588 22 14 10.9784 11.3537 2.9213 23 1 12.3487 11.1089 3.4384 24 1 10.7617 12.8146 2.7657 25 1 9.9832 10.8048 3.8772 26 6 9.3396 6.7266 1.2049 27 6 8.7771 5.4653 1.2012 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 2.6202 3.4281 -1.2484 36 1 4.1497 4.3380 -1.2473 37 1 4.0288 2.8015 -2.1380 38 1 6.0354 1.5911 0.0005 39 1 8.2057 2.9175 0.8921 40 1 8.2064 2.9172 -0.8879 41 1 8.5680 4.9666 -2.1305 42 1 9.5594 7.2192 -2.1349 43 1 11.3965 12.0773 0.2040 44 1 9.5588 7.2178 2.1414 45 1 8.5561 4.9704 2.1353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809014635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:12 Heat of formation + Delta-G solvation = -53.777755 kcal Electronic energy + Delta-G solvation = -27261.695260 eV Core-core repulsion = 23245.646937 eV Total energy + Delta-G solvation = -4016.048323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.58398 -39.06665 -38.51894 -37.37434 -36.39008 -35.44740 -32.93113 -32.37003 -31.23556 -30.12775 -29.36957 -26.98308 -26.68948 -25.31113 -24.66236 -22.77685 -21.95262 -21.34180 -20.09748 -18.21283 -17.95086 -17.52566 -16.92516 -16.81257 -16.52448 -15.70551 -15.32420 -15.24511 -14.60044 -14.40844 -14.39728 -14.23657 -14.01114 -13.83826 -13.58058 -13.42135 -13.29738 -12.80885 -12.70186 -12.64983 -12.45354 -12.34390 -12.13491 -11.97451 -11.82291 -11.73644 -11.51594 -11.48125 -11.24276 -10.83551 -10.75115 -10.59361 -10.40462 -10.16344 -9.75044 -9.60182 -9.29714 -8.79390 -8.12603 -7.14382 -6.41927 -4.00348 2.08972 2.27857 2.39924 2.55070 2.59260 2.99289 3.14964 3.16710 3.21418 3.44055 3.53494 3.99914 4.20946 4.35412 4.53669 4.56618 4.68288 4.85202 4.89262 4.90259 4.96217 5.10841 5.21077 5.21638 5.24348 5.30993 5.32076 5.34326 5.37004 5.43231 5.64623 5.74630 5.86517 5.93336 6.06498 6.24311 6.44266 6.59239 6.72508 6.93491 7.07737 7.21704 7.27040 7.35886 7.39294 7.48021 7.86368 8.03445 8.13836 9.03918 9.74093 10.76127 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002072 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.225452 B =13510.200709 C =14060.803549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.058 3.942 4 C -0.118 4.118 5 C 0.284 3.716 6 C -0.169 4.169 7 C 0.198 3.802 8 N -0.407 5.407 9 N -0.731 5.731 10 C 0.510 3.490 11 O -0.504 6.504 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.058 4.058 15 C -0.192 4.192 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.268 1.268 26 C -0.233 4.233 27 C -0.056 4.056 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.175 -24.729 -3.436 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.194 3.806 6 C -0.228 4.228 7 C -0.122 4.122 8 N -0.083 5.083 9 N -0.388 5.388 10 C 0.297 3.703 11 O -0.376 6.376 12 C -0.117 4.117 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.074 4.074 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.245 0.755 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.749 -22.808 -2.278 27.810 hybrid contribution 0.154 0.079 0.663 0.685 sum -15.595 -22.729 -1.615 27.612 Atomic orbital electron populations 1.22776 0.80487 1.03004 1.00288 1.87836 1.20119 1.27366 1.95511 1.22552 0.92812 0.85249 1.01272 1.21704 0.94467 0.93707 1.05784 1.17397 0.81946 0.93380 0.87873 1.22371 1.02236 1.03329 0.94843 1.29219 0.94408 0.94014 0.94557 1.81131 1.07642 1.08245 1.11274 1.46227 1.03822 1.10347 1.78379 1.21285 0.90246 0.83708 0.75020 1.90762 1.74465 1.26415 1.45940 1.20402 0.89397 0.97675 1.04179 1.18597 1.09198 0.95938 0.93720 1.20389 0.97115 0.93894 0.96255 1.20155 1.08429 0.96345 0.96178 1.19392 0.90475 0.86511 0.93286 1.83976 1.67606 1.23560 1.32964 1.21329 1.45874 0.96379 0.83119 0.89094 1.25282 0.96548 0.95435 0.99262 1.70040 1.41109 1.11674 1.26957 0.85720 0.78964 0.78594 0.80215 1.19879 1.20247 1.19212 1.21107 1.08847 0.96795 0.98435 1.20511 0.96419 0.94295 0.96177 0.93760 0.89345 0.93943 0.93102 0.91875 0.87906 0.89322 0.90952 0.88916 0.90025 0.75535 0.88811 0.88493 0.87276 0.86532 0.92058 0.85638 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.86 10.70 -35.23 -0.38 -3.23 16 3 C 0.06 0.37 5.33 37.16 0.20 0.57 16 4 C -0.12 -0.62 4.73 -26.73 -0.13 -0.75 16 5 C 0.28 2.31 0.79 -134.61 -0.11 2.20 16 6 C -0.17 -1.34 8.00 37.16 0.30 -1.04 16 7 C 0.20 2.46 11.48 -20.79 -0.24 2.22 16 8 N -0.41 -6.33 18.53 42.11 0.78 -5.55 16 9 N -0.73 -5.65 5.08 -50.23 -0.26 -5.90 16 10 C 0.51 6.20 7.24 -10.99 -0.08 6.12 16 11 O -0.50 -8.69 13.24 5.56 0.07 -8.61 16 12 C -0.08 -0.86 5.83 -29.03 -0.17 -1.03 16 13 C -0.17 -2.91 4.38 -104.57 -0.46 -3.37 16 14 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 15 C -0.19 -4.15 9.99 -39.40 -0.39 -4.55 16 16 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.21 9.76 0.02 0.00 -5.21 16 18 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.78 13.67 55.48 0.76 -25.02 16 22 Si 0.94 21.13 29.55 -169.99 -5.02 16.10 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 27 C -0.06 -1.06 9.69 -39.61 -0.38 -1.45 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.38 7.22 -51.93 -0.38 0.01 16 32 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 36 H 0.09 1.08 6.17 -51.93 -0.32 0.76 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.41 1.57 8.47 -40.82 -0.35 1.23 16 39 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 45 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -37.43 383.89 -5.47 -42.91 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.06 Total: 1.89 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.16 Total: -13.15 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 1.28 Total: -36.48 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.30 Total: -17.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.43 -5.47 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809014635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.871 kcal (2) G-P(sol) polarization free energy of solvation -37.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds