Wall clock time and date at job start Tue Mar 31 2020 17:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99831 * 2 1 4 4 C 1.53000 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47233 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47063 * 300.00327 * 5 4 3 7 7 C 1.47203 * 109.46955 * 60.00036 * 5 4 3 8 8 N 4.83745 * 113.89090 * 28.78043 * 2 1 3 9 9 N 1.46494 * 109.47168 * 180.02562 * 5 4 3 10 10 C 1.34777 * 120.00138 * 179.97438 * 9 5 4 11 11 O 1.21282 * 119.99908 * 0.02562 * 10 9 5 12 12 C 1.50699 * 120.00332 * 179.97438 * 10 9 5 13 13 C 1.50701 * 109.47420 * 180.02562 * 12 10 9 14 14 C 1.38304 * 119.92928 * 269.73009 * 13 12 10 15 15 C 1.38093 * 120.06663 * 179.72477 * 14 13 12 16 16 C 1.38880 * 119.93100 * 0.56456 * 15 14 13 17 17 O 1.35757 * 120.06973 * 179.68012 * 16 15 14 18 18 C 1.34832 * 116.99559 * 174.49040 * 17 16 15 19 19 H 1.07998 * 120.00420 * 5.05819 * 18 17 16 20 20 C 1.38654 * 119.99650 * 185.06026 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99978 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47401 * 90.00131 * 22 20 18 24 24 H 1.48505 * 109.46980 * 209.99768 * 22 20 18 25 25 H 1.48501 * 109.47410 * 329.99800 * 22 20 18 26 26 C 1.38878 * 119.86123 * 359.71138 * 16 15 14 27 27 C 1.38101 * 119.93284 * 359.97438 * 26 16 15 28 28 H 1.09002 * 109.47261 * 59.99870 * 1 2 3 29 29 H 1.08992 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46768 * 299.99349 * 1 2 3 31 31 H 1.09002 * 109.46613 * 60.00498 * 3 2 1 32 32 H 1.08992 * 109.46936 * 300.00373 * 3 2 1 33 33 H 1.09002 * 109.46749 * 59.99954 * 4 3 2 34 34 H 1.09001 * 109.47142 * 300.00471 * 4 3 2 35 35 H 1.08994 * 109.47107 * 59.99622 * 6 5 4 36 36 H 1.08998 * 109.47175 * 179.97438 * 6 5 4 37 37 H 1.09002 * 109.46927 * 299.99620 * 6 5 4 38 38 H 0.97007 * 120.00222 * 0.02562 * 9 5 4 39 39 H 1.09001 * 109.47065 * 300.00597 * 12 10 9 40 40 H 1.09002 * 109.47156 * 60.00273 * 12 10 9 41 41 H 1.08005 * 119.96338 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03730 * 180.27209 * 15 14 13 43 43 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03799 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96732 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 6 3.7067 3.3421 -1.2479 7 6 3.7228 3.3126 1.2032 8 7 3.3882 3.8766 2.1295 9 7 5.6181 2.4669 0.0013 10 6 6.3821 3.5772 0.0013 11 8 5.8605 4.6721 0.0018 12 6 7.8844 3.4583 0.0019 13 6 8.4973 4.8350 0.0024 14 6 8.7836 5.4633 -1.1960 15 6 9.3400 6.7272 -1.1988 16 6 9.6230 7.3625 0.0033 17 8 10.1760 8.6023 0.0037 18 6 10.3194 9.2081 1.1998 19 1 10.0764 8.6756 2.1074 20 6 10.7789 10.5147 1.2644 21 7 11.0754 11.1631 0.1588 22 14 10.9784 11.3537 2.9213 23 1 12.3487 11.1089 3.4384 24 1 10.7617 12.8146 2.7657 25 1 9.9832 10.8048 3.8772 26 6 9.3396 6.7266 1.2049 27 6 8.7771 5.4653 1.2012 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8574 0.6437 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 2.6202 3.4281 -1.2484 36 1 4.1497 4.3380 -1.2473 37 1 4.0288 2.8015 -2.1380 38 1 6.0354 1.5911 0.0005 39 1 8.2057 2.9175 0.8921 40 1 8.2064 2.9172 -0.8879 41 1 8.5680 4.9666 -2.1305 42 1 9.5594 7.2192 -2.1349 43 1 11.3965 12.0773 0.2040 44 1 9.5588 7.2178 2.1414 45 1 8.5561 4.9704 2.1353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809014635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:11 Heat of formation + Delta-G solvation = -81.961642 kcal Electronic energy + Delta-G solvation = -27262.917405 eV Core-core repulsion = 23245.646937 eV Total energy + Delta-G solvation = -4017.270468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.48649 -40.66907 -39.30798 -38.39717 -37.84289 -36.39423 -34.41980 -33.70416 -32.50492 -31.76578 -30.00550 -28.19810 -27.37313 -27.01107 -25.50060 -23.63284 -23.40983 -22.66689 -21.24454 -19.84735 -19.05216 -18.79976 -18.22753 -17.47601 -16.99854 -16.63604 -16.49662 -16.31119 -15.98822 -15.76764 -15.60676 -15.51776 -15.09398 -15.04784 -14.81273 -14.67782 -14.40162 -14.22669 -14.02304 -13.65197 -13.61095 -13.31517 -12.98229 -12.86156 -12.80551 -12.71488 -12.56129 -12.46256 -12.27900 -12.21432 -12.19157 -12.14824 -11.99277 -11.18670 -10.87200 -10.71016 -10.60033 -10.41064 -9.75302 -8.89465 -8.49297 -6.17168 0.62544 0.66836 1.31035 1.35064 1.41499 1.48721 1.64147 1.68844 2.15295 2.23394 2.75777 2.79394 2.89967 3.17815 3.53251 3.67657 3.78890 3.90218 4.06291 4.11092 4.13368 4.19764 4.32006 4.41112 4.52868 4.54733 4.56364 4.60889 4.72171 4.77442 4.80119 4.82699 4.89607 4.92805 5.00336 5.10632 5.13871 5.30826 5.31556 5.35583 5.57960 5.72226 5.78992 6.01798 6.16322 6.24874 6.40678 6.60007 6.95430 7.31625 7.77129 8.74059 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023265 B = 0.002072 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.225452 B =13510.200709 C =14060.803549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.054 3.946 4 C -0.107 4.107 5 C 0.285 3.715 6 C -0.168 4.168 7 C 0.217 3.783 8 N -0.474 5.474 9 N -0.705 5.705 10 C 0.512 3.488 11 O -0.563 6.563 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.052 4.052 15 C -0.206 4.206 16 C 0.110 3.890 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.097 0.903 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.018 2.982 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.248 4.248 27 C -0.064 4.064 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.433 0.567 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.111 0.889 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 -29.423 -3.882 33.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.145 4.145 5 C 0.195 3.805 6 C -0.227 4.227 7 C -0.102 4.102 8 N -0.151 5.151 9 N -0.363 5.363 10 C 0.300 3.700 11 O -0.440 6.440 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.070 4.070 15 C -0.225 4.225 16 C 0.060 3.940 17 O -0.141 6.141 18 C -0.491 4.491 19 H 0.114 0.886 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.183 1.183 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.268 4.268 27 C -0.082 4.082 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.274 0.726 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.775 -27.630 -2.728 32.439 hybrid contribution 0.255 1.134 0.679 1.346 sum -16.520 -26.497 -2.049 31.292 Atomic orbital electron populations 1.22937 0.79600 1.04014 1.00665 1.87800 1.21196 1.27698 1.95580 1.22610 0.93633 0.85053 1.01019 1.21689 0.93412 0.91621 1.07814 1.17743 0.82120 0.94656 0.86015 1.22386 1.02879 1.01635 0.95787 1.30182 0.92771 0.92748 0.94512 1.81139 1.09765 1.10481 1.13665 1.45909 1.03455 1.10512 1.76401 1.21357 0.90748 0.83686 0.74214 1.90791 1.75464 1.28808 1.48910 1.20564 0.88323 0.94306 1.08325 1.19279 1.05047 0.98009 0.92172 1.20936 0.94953 0.92217 0.98877 1.20492 1.08889 0.98074 0.95053 1.19977 0.92484 0.86053 0.95460 1.83932 1.70887 1.25880 1.33356 1.21775 1.46441 0.97229 0.83606 0.88603 1.26571 0.95941 0.95762 1.03778 1.70179 1.43590 1.12297 1.29705 0.84608 0.79587 0.77341 0.74778 1.18336 1.19350 1.18301 1.21206 1.09858 0.98529 0.97170 1.20919 0.95600 0.93010 0.98720 0.92704 0.88106 0.94295 0.95119 0.90543 0.84484 0.88667 0.89887 0.92634 0.86861 0.72624 0.85436 0.83655 0.82641 0.86857 0.91808 0.87113 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.79 10.70 -148.98 -1.59 -6.39 16 3 C 0.05 0.53 5.33 71.98 0.38 0.92 16 4 C -0.11 -0.66 4.73 30.59 0.14 -0.51 16 5 C 0.29 3.62 0.79 1.80 0.00 3.62 16 6 C -0.17 -2.14 8.00 71.98 0.58 -1.57 16 7 C 0.22 5.10 11.48 89.46 1.03 6.13 16 8 N -0.47 -14.79 18.53 19.99 0.37 -14.42 16 9 N -0.70 -7.31 5.08 -431.21 -2.19 -9.50 16 10 C 0.51 10.19 7.24 87.66 0.63 10.82 16 11 O -0.56 -18.24 13.24 -3.04 -0.04 -18.28 16 12 C -0.08 -1.23 5.83 29.10 0.17 -1.06 16 13 C -0.14 -4.34 4.38 -19.83 -0.09 -4.42 16 14 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 15 C -0.21 -9.09 9.99 22.39 0.22 -8.87 16 16 C 0.11 5.82 6.65 22.58 0.15 5.97 16 17 O -0.23 -14.80 9.76 -22.84 -0.22 -15.02 16 18 C -0.41 -25.48 9.49 67.92 0.64 -24.83 16 19 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 21 N -0.92 -58.32 13.67 21.61 0.30 -58.02 16 22 Si 1.02 45.10 29.55 68.60 2.03 47.12 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 C -0.25 -11.70 9.17 22.39 0.21 -11.49 16 27 C -0.06 -2.36 9.69 22.25 0.22 -2.15 16 28 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.03 0.42 7.22 -2.39 -0.02 0.41 16 32 H 0.08 0.53 6.43 -2.39 -0.02 0.52 16 33 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 0.86 6.43 -2.39 -0.02 0.85 16 36 H 0.05 1.20 6.17 -2.39 -0.01 1.19 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.43 0.42 8.47 -92.70 -0.79 -0.36 16 39 H 0.13 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.15 1.13 8.08 -2.39 -0.02 1.11 16 41 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 44 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 45 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -93.10 383.89 5.11 -87.99 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.24 Total: 14.92 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 6.22 Total: -28.41 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.53 Total: -81.94 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.86 Total: -39.68 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -93.10 5.11 -87.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809014635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.031 kcal (2) G-P(sol) polarization free energy of solvation -93.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds