Wall clock time and date at job start Tue Mar 31 2020 17:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53001 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47051 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47008 * 59.99770 * 5 4 3 7 7 C 1.47208 * 109.47052 * 299.99968 * 5 4 3 8 8 N 4.83746 * 113.89017 * 331.21852 * 2 1 3 9 9 N 1.46494 * 109.47111 * 180.02562 * 5 4 3 10 10 C 1.34780 * 119.99680 * 179.97438 * 9 5 4 11 11 O 1.21279 * 120.00338 * 359.97438 * 10 9 5 12 12 C 1.50701 * 119.99730 * 179.97438 * 10 9 5 13 13 C 1.50704 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.92739 * 269.72652 * 13 12 10 15 15 C 1.38099 * 120.06442 * 179.73015 * 14 13 12 16 16 C 1.38883 * 119.93300 * 0.56268 * 15 14 13 17 17 O 1.35750 * 120.06816 * 179.68750 * 16 15 14 18 18 C 1.34826 * 116.99744 * 174.48738 * 17 16 15 19 19 H 1.08005 * 120.00086 * 5.05449 * 18 17 16 20 20 C 1.38658 * 120.00451 * 185.05599 * 18 17 16 21 21 N 1.31557 * 119.99123 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47159 * 90.00249 * 22 20 18 24 24 H 1.48504 * 109.46843 * 209.99745 * 22 20 18 25 25 H 1.48497 * 109.47263 * 329.99816 * 22 20 18 26 26 C 1.38873 * 119.85919 * 359.70877 * 16 15 14 27 27 C 1.38099 * 119.93430 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47432 * 59.99999 * 1 2 3 29 29 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47077 * 299.99851 * 1 2 3 31 31 H 1.08998 * 109.47126 * 300.00013 * 3 2 1 32 32 H 1.08995 * 109.47267 * 60.00249 * 3 2 1 33 33 H 1.08998 * 109.47561 * 299.99501 * 4 3 2 34 34 H 1.08995 * 109.47686 * 60.00249 * 4 3 2 35 35 H 1.08998 * 109.47217 * 60.00222 * 6 5 4 36 36 H 1.09000 * 109.46934 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47299 * 299.99753 * 6 5 4 38 38 H 0.97000 * 120.00228 * 359.97438 * 9 5 4 39 39 H 1.09008 * 109.46975 * 299.99758 * 12 10 9 40 40 H 1.08995 * 109.47237 * 59.99896 * 12 10 9 41 41 H 1.08000 * 119.96447 * 359.97242 * 14 13 12 42 42 H 1.08005 * 120.03470 * 180.27518 * 15 14 13 43 43 H 0.97000 * 119.99551 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.03619 * 179.97438 * 26 16 15 45 45 H 1.07999 * 119.97054 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 3.7067 3.3409 1.2498 7 6 3.7229 3.3137 -1.2013 8 7 3.3881 3.8766 -2.1295 9 7 5.6181 2.4667 -0.0012 10 6 6.3820 3.5771 -0.0015 11 8 5.8605 4.6720 -0.0011 12 6 7.8843 3.4581 -0.0021 13 6 8.4973 4.8349 -0.0016 14 6 8.7826 5.4635 -1.2000 15 6 9.3392 6.7274 -1.2028 16 6 9.6231 7.3623 -0.0007 17 8 10.1761 8.6021 -0.0003 18 6 10.3205 9.2075 1.1957 19 1 10.0781 8.6748 2.1034 20 6 10.7800 10.5141 1.2605 21 7 11.0756 11.1628 0.1548 22 14 10.9794 11.3531 2.9175 23 1 12.3497 11.1082 3.4346 24 1 10.7629 12.8140 2.7618 25 1 9.9841 10.8042 3.8731 26 6 9.3406 6.7260 1.2009 27 6 8.7780 5.4648 1.1972 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6885 1.8464 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 3.8574 0.6436 0.8891 34 1 3.8567 0.6439 -0.8908 35 1 4.0287 2.7994 2.1394 36 1 4.1497 4.3368 1.2501 37 1 2.6201 3.4270 1.2503 38 1 6.0353 1.5910 -0.0019 39 1 8.2064 2.9171 0.8877 40 1 8.2056 2.9173 -0.8923 41 1 8.5664 4.9671 -2.1344 42 1 9.5577 7.2197 -2.1390 43 1 11.3968 12.0770 0.2000 44 1 9.5606 7.2170 2.1374 45 1 8.5576 4.9696 2.1313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809014638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:17 Heat of formation + Delta-G solvation = -53.878877 kcal Electronic energy + Delta-G solvation = -27256.418922 eV Core-core repulsion = 23240.366214 eV Total energy + Delta-G solvation = -4016.052708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.58306 -39.06698 -38.52028 -37.36962 -36.38812 -35.43429 -32.93136 -32.37218 -31.23607 -30.12804 -29.36890 -26.98411 -26.68980 -25.30766 -24.66709 -22.77874 -21.95086 -21.34233 -20.09768 -18.22308 -17.94541 -17.52336 -16.92656 -16.80461 -16.52199 -15.75510 -15.35649 -15.14196 -14.63434 -14.49007 -14.29959 -14.26241 -13.99297 -13.85439 -13.57712 -13.42292 -13.29842 -12.79189 -12.70185 -12.64549 -12.48217 -12.33333 -12.14556 -11.93362 -11.84132 -11.73852 -11.51543 -11.48499 -11.24686 -10.83912 -10.75136 -10.59627 -10.40988 -10.16341 -9.75040 -9.60282 -9.29854 -8.79728 -8.12576 -7.14408 -6.42003 -4.00561 2.08771 2.27822 2.39730 2.54471 2.58983 2.98982 3.14325 3.15812 3.20593 3.43855 3.53139 3.99267 4.20801 4.35335 4.53630 4.56563 4.68250 4.85149 4.89226 4.90234 4.96192 5.10667 5.21033 5.21785 5.24423 5.31037 5.32539 5.33653 5.37261 5.43236 5.64752 5.74030 5.86599 5.93595 6.06476 6.24283 6.44363 6.59264 6.72529 6.93721 7.07466 7.21485 7.27535 7.35607 7.38585 7.47733 7.86381 8.03176 8.13808 9.03593 9.74314 10.76121 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002043 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.781950 B =13702.460896 C =13994.403242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.058 3.942 4 C -0.118 4.118 5 C 0.285 3.715 6 C -0.169 4.169 7 C 0.199 3.801 8 N -0.408 5.408 9 N -0.731 5.731 10 C 0.510 3.490 11 O -0.504 6.504 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.233 4.233 27 C -0.055 4.055 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.409 0.591 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.127 0.873 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -24.730 3.837 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.194 3.806 6 C -0.228 4.228 7 C -0.122 4.122 8 N -0.083 5.083 9 N -0.388 5.388 10 C 0.297 3.703 11 O -0.376 6.376 12 C -0.117 4.117 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.073 4.073 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.144 0.856 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.750 -22.811 2.188 27.806 hybrid contribution 0.157 0.084 1.116 1.130 sum -15.593 -22.727 3.304 27.759 Atomic orbital electron populations 1.22778 0.80486 1.03004 1.00288 1.87834 1.20119 1.27364 1.95509 1.22551 0.92809 0.85253 1.01274 1.21706 0.94467 0.93700 1.05786 1.17400 0.81947 0.93357 0.87878 1.22370 1.02239 1.03339 0.94842 1.29267 0.94378 0.93992 0.94542 1.81177 1.07656 1.08289 1.11211 1.46228 1.03819 1.10348 1.78384 1.21286 0.90246 0.83707 0.75019 1.90761 1.74466 1.26412 1.45934 1.20403 0.89397 0.97675 1.04179 1.18598 1.09200 0.95937 0.93721 1.20403 0.97048 0.93949 0.96328 1.20159 1.08365 0.96314 0.96242 1.19385 0.90472 0.86508 0.93285 1.83977 1.67606 1.23568 1.32977 1.21329 1.45905 0.96381 0.83105 0.89059 1.25296 0.96567 0.95452 0.99273 1.70044 1.41074 1.11669 1.26978 0.85710 0.78945 0.78588 0.80173 1.19892 1.20277 1.19194 1.21102 1.08912 0.96834 0.98378 1.20496 0.96486 0.94238 0.96104 0.93932 0.89342 0.93771 0.93097 0.91880 0.87914 0.89308 0.90030 0.88922 0.90942 0.75533 0.88537 0.88765 0.87495 0.86594 0.92055 0.85577 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.86 10.70 -35.23 -0.38 -3.23 16 3 C 0.06 0.37 5.33 37.16 0.20 0.57 16 4 C -0.12 -0.62 4.73 -26.73 -0.13 -0.75 16 5 C 0.28 2.31 0.79 -134.60 -0.11 2.20 16 6 C -0.17 -1.36 8.01 37.16 0.30 -1.06 16 7 C 0.20 2.45 11.48 -20.76 -0.24 2.21 16 8 N -0.41 -6.29 18.54 42.16 0.78 -5.50 16 9 N -0.73 -5.65 5.08 -50.22 -0.26 -5.90 16 10 C 0.51 6.20 7.24 -10.98 -0.08 6.12 16 11 O -0.50 -8.68 13.24 5.56 0.07 -8.61 16 12 C -0.08 -0.86 5.83 -29.03 -0.17 -1.03 16 13 C -0.17 -2.92 4.38 -104.57 -0.46 -3.37 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 15 C -0.19 -4.24 9.99 -39.39 -0.39 -4.64 16 16 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 17 O -0.18 -5.22 9.76 0.06 0.00 -5.22 16 18 C -0.39 -11.15 9.49 30.89 0.29 -10.86 16 19 H 0.09 2.40 5.20 -52.48 -0.27 2.13 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.76 13.67 55.48 0.76 -25.01 16 22 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 27 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.18 8.14 -51.92 -0.42 -0.25 16 31 H 0.05 0.38 7.23 -51.93 -0.38 0.01 16 32 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16 37 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 38 H 0.41 1.57 8.47 -40.82 -0.35 1.23 16 39 H 0.10 0.80 8.08 -51.92 -0.42 0.38 16 40 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.13 2.79 5.64 -52.48 -0.30 2.50 16 45 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -37.33 383.91 -5.47 -42.80 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.06 Total: 2.15 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.16 Total: -13.09 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 1.28 Total: -36.41 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.30 Total: -17.06 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.33 -5.47 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809014638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.075 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds