Wall clock time and date at job start Tue Mar 31 2020 17:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99797 * 2 1 4 4 C 1.53001 * 109.46767 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47051 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47008 * 59.99770 * 5 4 3 7 7 C 1.47208 * 109.47052 * 299.99968 * 5 4 3 8 8 N 4.83746 * 113.89017 * 331.21852 * 2 1 3 9 9 N 1.46494 * 109.47111 * 180.02562 * 5 4 3 10 10 C 1.34780 * 119.99680 * 179.97438 * 9 5 4 11 11 O 1.21279 * 120.00338 * 359.97438 * 10 9 5 12 12 C 1.50701 * 119.99730 * 179.97438 * 10 9 5 13 13 C 1.50704 * 109.46997 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.92739 * 269.72652 * 13 12 10 15 15 C 1.38099 * 120.06442 * 179.73015 * 14 13 12 16 16 C 1.38883 * 119.93300 * 0.56268 * 15 14 13 17 17 O 1.35750 * 120.06816 * 179.68750 * 16 15 14 18 18 C 1.34826 * 116.99744 * 174.48738 * 17 16 15 19 19 H 1.08005 * 120.00086 * 5.05449 * 18 17 16 20 20 C 1.38658 * 120.00451 * 185.05599 * 18 17 16 21 21 N 1.31557 * 119.99123 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00318 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47159 * 90.00249 * 22 20 18 24 24 H 1.48504 * 109.46843 * 209.99745 * 22 20 18 25 25 H 1.48497 * 109.47263 * 329.99816 * 22 20 18 26 26 C 1.38873 * 119.85919 * 359.70877 * 16 15 14 27 27 C 1.38099 * 119.93430 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.47432 * 59.99999 * 1 2 3 29 29 H 1.09000 * 109.47276 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47077 * 299.99851 * 1 2 3 31 31 H 1.08998 * 109.47126 * 300.00013 * 3 2 1 32 32 H 1.08995 * 109.47267 * 60.00249 * 3 2 1 33 33 H 1.08998 * 109.47561 * 299.99501 * 4 3 2 34 34 H 1.08995 * 109.47686 * 60.00249 * 4 3 2 35 35 H 1.08998 * 109.47217 * 60.00222 * 6 5 4 36 36 H 1.09000 * 109.46934 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47299 * 299.99753 * 6 5 4 38 38 H 0.97000 * 120.00228 * 359.97438 * 9 5 4 39 39 H 1.09008 * 109.46975 * 299.99758 * 12 10 9 40 40 H 1.08995 * 109.47237 * 59.99896 * 12 10 9 41 41 H 1.08000 * 119.96447 * 359.97242 * 14 13 12 42 42 H 1.08005 * 120.03470 * 180.27518 * 15 14 13 43 43 H 0.97000 * 119.99551 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.03619 * 179.97438 * 26 16 15 45 45 H 1.07999 * 119.97054 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 3.7067 3.3409 1.2498 7 6 3.7229 3.3137 -1.2013 8 7 3.3881 3.8766 -2.1295 9 7 5.6181 2.4667 -0.0012 10 6 6.3820 3.5771 -0.0015 11 8 5.8605 4.6720 -0.0011 12 6 7.8843 3.4581 -0.0021 13 6 8.4973 4.8349 -0.0016 14 6 8.7826 5.4635 -1.2000 15 6 9.3392 6.7274 -1.2028 16 6 9.6231 7.3623 -0.0007 17 8 10.1761 8.6021 -0.0003 18 6 10.3205 9.2075 1.1957 19 1 10.0781 8.6748 2.1034 20 6 10.7800 10.5141 1.2605 21 7 11.0756 11.1628 0.1548 22 14 10.9794 11.3531 2.9175 23 1 12.3497 11.1082 3.4346 24 1 10.7629 12.8140 2.7618 25 1 9.9841 10.8042 3.8731 26 6 9.3406 6.7260 1.2009 27 6 8.7780 5.4648 1.1972 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6885 1.8464 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 3.8574 0.6436 0.8891 34 1 3.8567 0.6439 -0.8908 35 1 4.0287 2.7994 2.1394 36 1 4.1497 4.3368 1.2501 37 1 2.6201 3.4270 1.2503 38 1 6.0353 1.5910 -0.0019 39 1 8.2064 2.9171 0.8877 40 1 8.2056 2.9173 -0.8923 41 1 8.5664 4.9671 -2.1344 42 1 9.5577 7.2197 -2.1390 43 1 11.3968 12.0770 0.2000 44 1 9.5606 7.2170 2.1374 45 1 8.5576 4.9696 2.1313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809014638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:16 Heat of formation + Delta-G solvation = -81.972704 kcal Electronic energy + Delta-G solvation = -27257.637162 eV Core-core repulsion = 23240.366214 eV Total energy + Delta-G solvation = -4017.270948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48523 -40.66754 -39.30659 -38.39539 -37.83430 -36.37899 -34.40613 -33.70317 -32.50567 -31.76157 -30.00673 -28.19965 -27.36913 -26.99960 -25.50112 -23.63037 -23.41048 -22.66408 -21.24469 -19.84711 -19.05954 -18.76854 -18.22835 -17.47720 -16.99718 -16.68328 -16.48481 -16.22195 -16.02234 -15.76979 -15.58002 -15.51925 -15.14361 -15.01779 -14.79175 -14.67357 -14.41081 -14.20504 -14.03872 -13.62959 -13.59845 -13.31405 -12.96640 -12.86446 -12.79104 -12.71156 -12.57159 -12.44661 -12.26764 -12.21830 -12.19036 -12.12370 -11.99342 -11.16764 -10.86286 -10.70526 -10.60005 -10.41101 -9.75287 -8.89286 -8.47461 -6.15774 0.62421 0.67153 1.33508 1.35269 1.44172 1.51967 1.63991 1.68604 2.17449 2.23338 2.75742 2.79869 2.90802 3.18567 3.52985 3.67492 3.78774 3.90029 4.08005 4.10981 4.12971 4.20496 4.31929 4.41017 4.53703 4.54797 4.56255 4.60719 4.71936 4.76429 4.79337 4.82613 4.89589 4.92754 5.00260 5.10954 5.15137 5.30711 5.32039 5.35074 5.57753 5.72739 5.79067 6.02959 6.16373 6.24882 6.40820 6.60046 6.97000 7.31634 7.79134 8.76203 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023313 B = 0.002043 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.781950 B =13702.460896 C =13994.403242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.054 3.946 4 C -0.107 4.107 5 C 0.286 3.714 6 C -0.168 4.168 7 C 0.217 3.783 8 N -0.474 5.474 9 N -0.705 5.705 10 C 0.512 3.488 11 O -0.563 6.563 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.061 4.061 15 C -0.211 4.211 16 C 0.111 3.889 17 O -0.236 6.236 18 C -0.413 4.413 19 H 0.102 0.898 20 C -0.027 4.027 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.253 1.253 26 C -0.244 4.244 27 C -0.054 4.054 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.433 0.567 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.105 0.895 43 H 0.272 0.728 44 H 0.119 0.881 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 -29.474 6.355 34.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.145 4.145 5 C 0.195 3.805 6 C -0.227 4.227 7 C -0.102 4.102 8 N -0.150 5.150 9 N -0.363 5.363 10 C 0.300 3.700 11 O -0.440 6.440 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.079 4.079 15 C -0.231 4.231 16 C 0.061 3.939 17 O -0.143 6.143 18 C -0.489 4.489 19 H 0.120 0.880 20 C -0.224 4.224 21 N -0.562 5.562 22 Si 0.840 3.160 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.177 1.177 26 C -0.263 4.263 27 C -0.072 4.072 28 H 0.057 0.943 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.155 0.845 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.274 0.726 39 H 0.161 0.839 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.823 -27.686 4.700 32.736 hybrid contribution 0.276 1.159 0.241 1.216 sum -16.547 -26.527 4.942 31.653 Atomic orbital electron populations 1.22939 0.79599 1.04016 1.00666 1.87797 1.21197 1.27694 1.95578 1.22609 0.93629 0.85058 1.01022 1.21690 0.93415 0.91615 1.07817 1.17739 0.82121 0.94627 0.86024 1.22384 1.02889 1.01630 0.95803 1.30214 0.92761 0.92736 0.94493 1.81186 1.09752 1.10494 1.13577 1.45910 1.03452 1.10513 1.76408 1.21359 0.90750 0.83685 0.74213 1.90791 1.75465 1.28804 1.48904 1.20563 0.88319 0.94306 1.08324 1.19276 1.05083 0.98015 0.92172 1.20861 0.95681 0.92528 0.98869 1.20417 1.09378 0.98077 0.95192 1.19942 0.92470 0.86076 0.95451 1.83938 1.70845 1.25915 1.33638 1.21846 1.46288 0.97196 0.83614 0.88045 1.26657 0.95937 0.95840 1.03924 1.70202 1.43743 1.12279 1.29933 0.84559 0.79687 0.77133 0.74635 1.18410 1.19712 1.17664 1.21262 1.09471 0.98569 0.97012 1.20985 0.94822 0.92679 0.98742 0.94265 0.88103 0.92732 0.95081 0.90579 0.84535 0.88609 0.86926 0.92669 0.89862 0.72624 0.83911 0.85181 0.84285 0.87667 0.91904 0.86367 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.79 10.70 -148.98 -1.59 -6.38 16 3 C 0.05 0.53 5.33 71.98 0.38 0.92 16 4 C -0.11 -0.66 4.73 30.60 0.14 -0.51 16 5 C 0.29 3.62 0.79 1.80 0.00 3.62 16 6 C -0.17 -2.17 8.01 71.98 0.58 -1.60 16 7 C 0.22 5.06 11.48 89.44 1.03 6.09 16 8 N -0.47 -14.66 18.54 20.01 0.37 -14.29 16 9 N -0.71 -7.31 5.08 -431.19 -2.19 -9.50 16 10 C 0.51 10.19 7.24 87.66 0.63 10.82 16 11 O -0.56 -18.23 13.24 -3.02 -0.04 -18.27 16 12 C -0.08 -1.23 5.83 29.10 0.17 -1.06 16 13 C -0.14 -4.35 4.38 -19.83 -0.09 -4.44 16 14 C -0.06 -2.19 9.69 22.25 0.22 -1.97 16 15 C -0.21 -9.76 9.99 22.39 0.22 -9.53 16 16 C 0.11 5.84 6.65 22.58 0.15 6.00 16 17 O -0.24 -14.98 9.76 -22.71 -0.22 -15.20 16 18 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 19 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 20 C -0.03 -1.57 5.49 84.83 0.47 -1.10 16 21 N -0.92 -58.69 13.67 21.61 0.30 -58.39 16 22 Si 1.02 44.18 29.55 68.60 2.03 46.20 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 26 C -0.24 -11.01 9.17 22.39 0.21 -10.81 16 27 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 28 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.03 0.43 7.23 -2.39 -0.02 0.41 16 32 H 0.08 0.54 6.43 -2.39 -0.02 0.52 16 33 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 1.21 6.17 -2.39 -0.01 1.19 16 37 H 0.08 0.87 6.43 -2.39 -0.02 0.86 16 38 H 0.43 0.42 8.47 -92.71 -0.79 -0.36 16 39 H 0.14 1.17 8.08 -2.38 -0.02 1.15 16 40 H 0.13 1.35 8.08 -2.39 -0.02 1.33 16 41 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 45 H 0.15 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -92.97 383.91 5.11 -87.86 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.24 Total: 16.14 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 6.22 Total: -28.16 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -1.53 Total: -82.18 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.86 Total: -39.86 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -92.97 5.11 -87.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809014638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.885 kcal (2) G-P(sol) polarization free energy of solvation -92.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds