Wall clock time and date at job start Tue Mar 31 2020 17:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00273 * 2 1 4 4 C 1.52993 * 109.47496 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47422 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46901 * 300.00115 * 5 4 3 7 7 C 1.47208 * 109.46940 * 59.99561 * 5 4 3 8 8 N 4.83747 * 113.89024 * 28.77839 * 2 1 3 9 9 N 1.46495 * 109.47276 * 179.97438 * 5 4 3 10 10 C 1.34783 * 119.99931 * 180.02562 * 9 5 4 11 11 O 1.21281 * 119.99796 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99878 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.46970 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02075 * 13 12 10 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96952 * 89.99515 * 13 12 10 28 28 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47045 * 300.00011 * 1 2 3 30 30 H 1.09001 * 109.46870 * 60.00213 * 1 2 3 31 31 H 1.09002 * 109.46636 * 59.99109 * 3 2 1 32 32 H 1.09002 * 109.46605 * 300.00166 * 3 2 1 33 33 H 1.08996 * 109.47297 * 59.99586 * 4 3 2 34 34 H 1.09009 * 109.47003 * 299.99963 * 4 3 2 35 35 H 1.08997 * 109.47273 * 299.99174 * 6 5 4 36 36 H 1.09002 * 109.47630 * 60.00017 * 6 5 4 37 37 H 1.09004 * 109.46946 * 179.97438 * 6 5 4 38 38 H 0.97001 * 120.00257 * 0.02562 * 9 5 4 39 39 H 1.08996 * 109.47386 * 59.99804 * 12 10 9 40 40 H 1.08997 * 109.47038 * 299.99640 * 12 10 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 44 44 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03594 * 0.04940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 6 3.7068 3.3408 -1.2499 7 6 3.7229 3.3137 1.2013 8 7 3.3881 3.8767 2.1293 9 7 5.6182 2.4667 0.0012 10 6 6.3822 3.5771 0.0015 11 8 5.8605 4.6720 0.0011 12 6 7.8844 3.4581 0.0021 13 6 8.4974 4.8348 0.0029 14 6 8.7785 5.4665 -1.1952 15 6 9.3414 6.7295 -1.1986 16 6 9.6185 7.3670 -0.0051 17 6 9.3427 6.7332 1.1992 18 8 9.6195 7.3547 2.3739 19 6 10.2714 8.5329 2.3044 20 1 10.4769 8.9804 1.3432 21 6 10.6779 9.1700 3.4669 22 7 11.3144 10.3193 3.3990 23 14 10.3230 8.3956 5.1293 24 1 11.4519 7.5111 5.5146 25 1 10.1609 9.4635 6.1484 26 1 9.0740 7.5966 5.0468 27 6 8.7772 5.4645 1.1994 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8575 0.6436 -0.8890 34 1 3.8567 0.6439 0.8909 35 1 4.0288 2.7994 -2.1394 36 1 2.6202 3.4269 -1.2504 37 1 4.1498 4.3368 -1.2501 38 1 6.0354 1.5910 0.0019 39 1 8.2065 2.9170 -0.8876 40 1 8.2056 2.9173 0.8923 41 1 8.5587 4.9719 -2.1298 42 1 9.5602 7.2200 -2.1357 43 1 10.0533 8.3556 -0.0085 44 1 11.5984 10.7652 4.2122 45 1 8.5578 4.9707 2.1345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809015136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:22 Heat of formation + Delta-G solvation = -51.516218 kcal Electronic energy + Delta-G solvation = -27473.014920 eV Core-core repulsion = 23457.064665 eV Total energy + Delta-G solvation = -4015.950255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.64675 -39.20399 -38.56934 -37.41131 -36.51973 -35.45482 -33.01113 -32.37239 -31.92281 -29.60066 -29.30252 -27.24507 -26.87930 -25.24010 -24.85504 -22.79333 -21.89996 -21.32710 -20.19826 -18.29704 -17.67509 -17.57640 -17.01967 -16.86631 -16.52584 -15.74456 -15.39500 -15.25992 -15.10202 -14.62262 -14.34018 -14.16670 -13.93131 -13.90747 -13.67412 -13.46919 -13.35204 -12.81416 -12.67914 -12.58388 -12.42866 -12.34435 -12.16730 -12.12183 -11.94979 -11.80506 -11.65135 -11.51890 -11.29179 -10.84104 -10.78872 -10.69696 -10.16847 -10.13225 -9.84310 -9.65300 -9.36229 -8.83811 -8.13961 -7.33540 -6.37778 -4.04286 1.92877 2.24757 2.33692 2.50870 2.56018 2.97724 3.25048 3.28019 3.41302 3.44772 3.51720 4.19054 4.27621 4.32627 4.46579 4.55587 4.65091 4.71585 4.84126 4.87780 4.89815 4.93870 5.08258 5.14923 5.20898 5.24703 5.29520 5.31270 5.34469 5.40177 5.53785 5.69234 5.84629 5.89473 6.01652 6.13938 6.26973 6.54205 6.58821 6.80289 7.10945 7.15414 7.22231 7.34059 7.35947 7.63116 7.83876 8.05661 8.07741 8.97838 9.60924 10.69984 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.002388 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.623425 B =11723.705558 C =12723.984521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.058 3.942 4 C -0.118 4.118 5 C 0.286 3.714 6 C -0.169 4.169 7 C 0.195 3.805 8 N -0.404 5.404 9 N -0.729 5.729 10 C 0.515 3.485 11 O -0.503 6.503 12 C -0.091 4.091 13 C -0.038 4.038 14 C -0.187 4.187 15 C -0.076 4.076 16 C -0.216 4.216 17 C 0.160 3.840 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.904 3.096 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.174 4.174 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.410 0.590 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.787 -23.492 -11.995 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.195 3.805 6 C -0.228 4.228 7 C -0.125 4.125 8 N -0.079 5.079 9 N -0.386 5.386 10 C 0.302 3.698 11 O -0.375 6.375 12 C -0.131 4.131 13 C -0.038 4.038 14 C -0.206 4.206 15 C -0.095 4.095 16 C -0.236 4.236 17 C 0.108 3.892 18 O -0.124 6.124 19 C -0.464 4.464 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.193 4.193 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.478 -21.838 -10.218 29.204 hybrid contribution 0.099 -0.374 0.425 0.575 sum -16.379 -22.212 -9.793 29.284 Atomic orbital electron populations 1.22778 0.80474 1.03013 1.00288 1.87835 1.20127 1.27347 1.95510 1.22548 0.92775 0.85270 1.01285 1.21704 0.94504 0.93648 1.05830 1.17394 0.81701 0.93434 0.87926 1.22368 1.02300 1.03279 0.94805 1.29249 0.94570 0.94113 0.94595 1.81198 1.07505 1.08151 1.11059 1.46158 1.03946 1.10255 1.78247 1.20965 0.89816 0.83836 0.75201 1.90777 1.74417 1.26343 1.45922 1.20581 0.90071 0.97460 1.04971 1.18622 0.98480 0.93661 0.93079 1.20406 1.07259 0.96840 0.96081 1.20739 0.97270 0.94459 0.96988 1.21302 1.08073 1.02278 0.91905 1.19017 0.93244 0.91045 0.85897 1.83572 1.67424 1.34844 1.26585 1.20760 1.34251 0.94471 0.96875 0.87636 1.24452 0.95261 0.95247 0.99047 1.69646 1.37167 1.15032 1.30027 0.86200 0.80029 0.79036 0.81778 1.19886 1.20784 1.18399 1.19947 1.07688 0.94401 0.97312 0.89335 0.93925 0.93774 0.93065 0.91890 0.87893 0.89254 0.90019 0.90881 0.88950 0.75426 0.87785 0.88031 0.87614 0.87153 0.85000 0.91113 0.86941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.85 10.70 -35.23 -0.38 -3.23 16 3 C 0.06 0.37 5.33 37.15 0.20 0.57 16 4 C -0.12 -0.62 4.73 -26.74 -0.13 -0.74 16 5 C 0.29 2.30 0.79 -134.61 -0.11 2.19 16 6 C -0.17 -1.28 8.01 37.16 0.30 -0.98 16 7 C 0.20 2.46 11.48 -20.76 -0.24 2.22 16 8 N -0.40 -6.45 18.54 42.15 0.78 -5.67 16 9 N -0.73 -5.56 5.09 -50.23 -0.26 -5.82 16 10 C 0.51 6.20 7.24 -10.98 -0.08 6.12 16 11 O -0.50 -8.57 13.24 5.56 0.07 -8.50 16 12 C -0.09 -1.01 5.83 -29.04 -0.17 -1.18 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.19 -3.11 9.70 -39.53 -0.38 -3.49 16 15 C -0.08 -1.41 10.04 -39.61 -0.40 -1.81 16 16 C -0.22 -4.84 9.17 -39.39 -0.36 -5.20 16 17 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 18 O -0.22 -6.02 8.59 0.05 0.00 -6.02 16 19 C -0.39 -11.27 9.95 30.89 0.31 -10.96 16 20 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 21 C 0.06 1.82 5.49 -17.52 -0.10 1.72 16 22 N -0.88 -26.00 13.96 55.48 0.77 -25.23 16 23 Si 0.90 22.47 28.62 -169.99 -4.86 17.60 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.26 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.17 -3.58 9.64 -39.40 -0.38 -3.96 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.05 0.39 7.23 -51.93 -0.38 0.01 16 32 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 37 H 0.09 1.03 6.17 -51.93 -0.32 0.71 16 38 H 0.41 1.51 8.47 -40.82 -0.35 1.17 16 39 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.13 3.08 5.64 -52.49 -0.30 2.79 16 44 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -37.04 382.79 -5.31 -42.35 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.07 Total: 0.49 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.14 Total: -11.74 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 1.30 Total: -36.72 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.30 Total: -17.75 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.86 Total: 17.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.04 -5.31 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809015136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.169 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds