Wall clock time and date at job start Tue Mar 31 2020 17:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00273 * 2 1 4 4 C 1.52993 * 109.47496 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47422 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46901 * 300.00115 * 5 4 3 7 7 C 1.47208 * 109.46940 * 59.99561 * 5 4 3 8 8 N 4.83747 * 113.89024 * 28.77839 * 2 1 3 9 9 N 1.46495 * 109.47276 * 179.97438 * 5 4 3 10 10 C 1.34783 * 119.99931 * 180.02562 * 9 5 4 11 11 O 1.21281 * 119.99796 * 0.02562 * 10 9 5 12 12 C 1.50697 * 119.99878 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.46970 * 180.02562 * 12 10 9 14 14 C 1.38328 * 119.96224 * 270.02075 * 13 12 10 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96952 * 89.99515 * 13 12 10 28 28 H 1.09003 * 109.46993 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47045 * 300.00011 * 1 2 3 30 30 H 1.09001 * 109.46870 * 60.00213 * 1 2 3 31 31 H 1.09002 * 109.46636 * 59.99109 * 3 2 1 32 32 H 1.09002 * 109.46605 * 300.00166 * 3 2 1 33 33 H 1.08996 * 109.47297 * 59.99586 * 4 3 2 34 34 H 1.09009 * 109.47003 * 299.99963 * 4 3 2 35 35 H 1.08997 * 109.47273 * 299.99174 * 6 5 4 36 36 H 1.09002 * 109.47630 * 60.00017 * 6 5 4 37 37 H 1.09004 * 109.46946 * 179.97438 * 6 5 4 38 38 H 0.97001 * 120.00257 * 0.02562 * 9 5 4 39 39 H 1.08996 * 109.47386 * 59.99804 * 12 10 9 40 40 H 1.08997 * 109.47038 * 299.99640 * 12 10 9 41 41 H 1.08001 * 119.93314 * 359.97438 * 14 13 12 42 42 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 43 43 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 44 44 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03594 * 0.04940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 6 3.7068 3.3408 -1.2499 7 6 3.7229 3.3137 1.2013 8 7 3.3881 3.8767 2.1293 9 7 5.6182 2.4667 0.0012 10 6 6.3822 3.5771 0.0015 11 8 5.8605 4.6720 0.0011 12 6 7.8844 3.4581 0.0021 13 6 8.4974 4.8348 0.0029 14 6 8.7785 5.4665 -1.1952 15 6 9.3414 6.7295 -1.1986 16 6 9.6185 7.3670 -0.0051 17 6 9.3427 6.7332 1.1992 18 8 9.6195 7.3547 2.3739 19 6 10.2714 8.5329 2.3044 20 1 10.4769 8.9804 1.3432 21 6 10.6779 9.1700 3.4669 22 7 11.3144 10.3193 3.3990 23 14 10.3230 8.3956 5.1293 24 1 11.4519 7.5111 5.5146 25 1 10.1609 9.4635 6.1484 26 1 9.0740 7.5966 5.0468 27 6 8.7772 5.4645 1.1994 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8575 0.6436 -0.8890 34 1 3.8567 0.6439 0.8909 35 1 4.0288 2.7994 -2.1394 36 1 2.6202 3.4269 -1.2504 37 1 4.1498 4.3368 -1.2501 38 1 6.0354 1.5910 0.0019 39 1 8.2065 2.9170 -0.8876 40 1 8.2056 2.9173 0.8923 41 1 8.5587 4.9719 -2.1298 42 1 9.5602 7.2200 -2.1357 43 1 10.0533 8.3556 -0.0085 44 1 11.5984 10.7652 4.2122 45 1 8.5578 4.9707 2.1345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809015136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:21 Heat of formation + Delta-G solvation = -79.234604 kcal Electronic energy + Delta-G solvation = -27474.216880 eV Core-core repulsion = 23457.064665 eV Total energy + Delta-G solvation = -4017.152215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.54406 -40.78591 -39.33732 -38.45482 -37.89596 -36.41031 -34.50810 -33.91908 -33.02256 -31.08484 -30.06573 -28.40166 -27.35478 -27.17782 -25.60436 -23.44796 -23.37920 -22.72462 -21.38067 -19.69679 -19.17199 -18.70624 -18.23839 -17.50161 -16.99860 -16.86884 -16.80446 -16.29323 -16.05089 -15.78716 -15.70811 -15.58099 -15.10938 -15.05372 -14.86548 -14.68376 -14.43123 -14.20245 -14.06989 -13.94213 -13.62810 -13.33553 -13.06550 -12.87831 -12.79356 -12.73976 -12.58601 -12.52242 -12.42649 -12.32791 -12.19950 -11.99959 -11.95830 -11.32556 -10.95163 -10.82926 -10.60668 -10.44428 -9.66588 -9.06019 -8.53272 -6.25342 0.47741 0.70918 1.25188 1.29135 1.33578 1.46442 1.61335 1.65356 2.20275 2.24014 2.72856 2.75530 2.86027 3.05302 3.14612 3.66378 3.74469 3.82871 4.08132 4.08776 4.11102 4.27597 4.31642 4.40440 4.47105 4.54580 4.55512 4.57428 4.68767 4.71180 4.74057 4.80456 4.89414 4.92361 4.98311 5.00702 5.24865 5.29901 5.33783 5.38611 5.65730 5.73419 5.75975 5.91139 6.16150 6.25873 6.39485 6.55382 6.81354 7.26087 7.57706 8.58617 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.002388 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.623425 B =11723.705558 C =12723.984521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.054 3.946 4 C -0.107 4.107 5 C 0.286 3.714 6 C -0.167 4.167 7 C 0.216 3.784 8 N -0.476 5.476 9 N -0.704 5.704 10 C 0.515 3.485 11 O -0.561 6.561 12 C -0.089 4.089 13 C -0.028 4.028 14 C -0.164 4.164 15 C -0.079 4.079 16 C -0.241 4.241 17 C 0.114 3.886 18 O -0.251 6.251 19 C -0.398 4.398 20 H 0.081 0.919 21 C 0.009 3.991 22 N -0.922 5.922 23 Si 0.969 3.031 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.273 1.273 27 C -0.185 4.185 28 H 0.100 0.900 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.433 0.567 39 H 0.158 0.842 40 H 0.126 0.874 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.285 0.715 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.719 -28.262 -14.543 35.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.146 4.146 5 C 0.195 3.805 6 C -0.226 4.226 7 C -0.104 4.104 8 N -0.153 5.153 9 N -0.362 5.362 10 C 0.303 3.697 11 O -0.438 6.438 12 C -0.128 4.128 13 C -0.029 4.029 14 C -0.182 4.182 15 C -0.097 4.097 16 C -0.261 4.261 17 C 0.065 3.935 18 O -0.159 6.159 19 C -0.474 4.474 20 H 0.098 0.902 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.791 3.209 24 H -0.184 1.184 25 H -0.190 1.190 26 H -0.198 1.198 27 C -0.205 4.205 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.157 0.843 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.275 0.725 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.411 -26.696 -12.804 34.348 hybrid contribution 0.236 0.885 0.889 1.277 sum -17.175 -25.812 -11.914 33.214 Atomic orbital electron populations 1.22937 0.79594 1.04014 1.00666 1.87799 1.21200 1.27697 1.95580 1.22611 0.93592 0.85064 1.01045 1.21694 0.93453 0.91583 1.07839 1.17790 0.81914 0.94702 0.86079 1.22385 1.02920 1.01664 0.95598 1.30302 0.92780 0.92742 0.94553 1.81204 1.09840 1.10601 1.13616 1.45870 1.03558 1.10430 1.76295 1.21112 0.90373 0.83821 0.74378 1.90798 1.75404 1.28710 1.48860 1.20735 0.88942 0.94232 1.08859 1.19255 0.96134 0.96010 0.91458 1.21068 1.03477 0.95499 0.98163 1.21153 0.96527 0.95471 0.96530 1.21324 1.09561 1.01795 0.93378 1.19653 0.95379 0.92816 0.85614 1.83509 1.69380 1.34573 1.28462 1.20709 1.34873 0.95555 0.96310 0.90174 1.25252 0.95317 0.95819 1.02488 1.69724 1.39004 1.16380 1.31207 0.85250 0.79433 0.78477 0.77711 1.18412 1.19004 1.19770 1.20299 1.07448 0.93299 0.99408 0.88110 0.94385 0.92605 0.95258 0.90351 0.84265 0.88844 0.86597 0.89844 0.92496 0.72549 0.82461 0.85620 0.82498 0.84086 0.87759 0.90570 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.83 10.70 -148.98 -1.59 -6.43 16 3 C 0.05 0.54 5.33 71.98 0.38 0.92 16 4 C -0.11 -0.67 4.73 30.59 0.14 -0.52 16 5 C 0.29 3.65 0.79 1.80 0.00 3.65 16 6 C -0.17 -1.98 8.01 71.98 0.58 -1.41 16 7 C 0.22 5.26 11.48 89.44 1.03 6.29 16 8 N -0.48 -15.59 18.54 20.01 0.37 -15.22 16 9 N -0.70 -7.42 5.09 -431.21 -2.19 -9.61 16 10 C 0.52 10.37 7.24 87.66 0.63 11.01 16 11 O -0.56 -18.14 13.24 -3.03 -0.04 -18.18 16 12 C -0.09 -1.47 5.83 29.10 0.17 -1.30 16 13 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 14 C -0.16 -4.76 9.70 22.30 0.22 -4.55 16 15 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 16 C -0.24 -11.29 9.17 22.39 0.21 -11.09 16 17 C 0.11 5.74 6.65 22.58 0.15 5.89 16 18 O -0.25 -14.70 8.59 -22.74 -0.20 -14.89 16 19 C -0.40 -24.83 9.95 67.92 0.68 -24.15 16 20 H 0.08 5.21 5.44 -2.91 -0.02 5.20 16 21 C 0.01 0.57 5.49 84.83 0.47 1.04 16 22 N -0.92 -57.17 13.96 21.61 0.30 -56.87 16 23 Si 0.97 48.22 28.62 68.60 1.96 50.18 16 24 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.27 -13.97 7.11 99.48 0.71 -13.27 16 27 C -0.19 -7.59 9.64 22.39 0.22 -7.38 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.03 0.42 7.23 -2.39 -0.02 0.40 16 32 H 0.08 0.52 6.43 -2.39 -0.02 0.50 16 33 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.80 6.43 -2.39 -0.02 0.78 16 37 H 0.06 1.16 6.17 -2.38 -0.01 1.15 16 38 H 0.43 0.48 8.47 -92.71 -0.79 -0.30 16 39 H 0.16 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 41 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 43 H 0.10 5.36 5.64 -2.91 -0.02 5.34 16 44 H 0.28 16.16 8.31 -92.71 -0.77 15.39 16 45 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -91.27 382.79 5.11 -86.16 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.24 Total: 8.53 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 6.25 Total: -23.66 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -1.52 Total: -81.70 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -1.83 Total: -39.51 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.96 Total: 50.18 kcal Total: -91.27 5.11 -86.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809015136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.926 kcal (2) G-P(sol) polarization free energy of solvation -91.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds