Wall clock time and date at job start Tue Mar 31 2020 17:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00015 * 2 1 4 4 C 1.53006 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47334 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46902 * 59.99904 * 5 4 3 7 7 C 1.47201 * 109.47043 * 300.00012 * 5 4 3 8 8 N 4.83741 * 113.89335 * 331.21874 * 2 1 3 9 9 N 1.46499 * 109.46855 * 179.97438 * 5 4 3 10 10 C 1.34782 * 119.99673 * 179.97438 * 9 5 4 11 11 O 1.21279 * 120.00167 * 0.02562 * 10 9 5 12 12 C 1.50693 * 119.99718 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.38329 * 119.96752 * 269.72562 * 13 12 10 15 15 C 1.38283 * 120.13675 * 179.76585 * 14 13 12 16 16 C 1.38115 * 120.07015 * 0.50828 * 15 14 13 17 17 C 1.38859 * 119.93307 * 359.74570 * 16 15 14 18 18 O 1.35755 * 120.07254 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99844 * 354.49143 * 18 17 16 20 20 H 1.08002 * 119.99565 * 5.05652 * 19 18 17 21 21 C 1.38649 * 119.99784 * 185.05740 * 19 18 17 22 22 N 1.31555 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99774 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47051 * 60.00002 * 23 21 19 25 25 H 1.48499 * 109.46960 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46767 * 299.99662 * 23 21 19 27 27 C 1.38083 * 119.96658 * 90.00213 * 13 12 10 28 28 H 1.09004 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47291 * 300.00483 * 1 2 3 30 30 H 1.09001 * 109.46724 * 60.00454 * 1 2 3 31 31 H 1.09003 * 109.47313 * 299.99393 * 3 2 1 32 32 H 1.09005 * 109.47699 * 59.99648 * 3 2 1 33 33 H 1.09003 * 109.46524 * 299.99995 * 4 3 2 34 34 H 1.08996 * 109.46835 * 59.99462 * 4 3 2 35 35 H 1.08993 * 109.47281 * 60.00164 * 6 5 4 36 36 H 1.09003 * 109.46639 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47060 * 299.99795 * 6 5 4 38 38 H 0.96995 * 120.00274 * 0.02562 * 9 5 4 39 39 H 1.09003 * 109.47403 * 299.99981 * 12 10 9 40 40 H 1.09005 * 109.47393 * 60.00084 * 12 10 9 41 41 H 1.07995 * 119.92728 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96152 * 180.25421 * 15 14 13 43 43 H 1.08000 * 120.03757 * 179.72590 * 16 15 14 44 44 H 0.97004 * 119.99501 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.02969 * 359.95679 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5823 0.0000 6 6 3.7059 3.3424 1.2486 7 6 3.7239 3.3121 -1.2025 8 7 3.3884 3.8765 -2.1295 9 7 5.6183 2.4666 0.0012 10 6 6.3822 3.5770 0.0004 11 8 5.8607 4.6719 -0.0009 12 6 7.8845 3.4579 0.0011 13 6 8.4974 4.8346 -0.0007 14 6 8.7842 5.4618 -1.1998 15 6 9.3422 6.7270 -1.2056 16 6 9.6247 7.3642 -0.0132 17 6 9.3430 6.7352 1.1923 18 8 9.6200 7.3586 2.3659 19 6 10.2719 8.5367 2.2942 20 1 10.4769 8.9827 1.3322 21 6 10.6790 9.1755 3.4555 22 7 10.4287 8.6324 4.6273 23 14 11.5815 10.8080 3.3562 24 1 10.7195 11.8098 2.6790 25 1 11.9054 11.2787 4.7269 26 1 12.8377 10.6329 2.5839 27 6 8.7776 5.4664 1.1947 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8567 0.6439 0.8909 34 1 3.8575 0.6435 -0.8890 35 1 4.0271 2.8021 2.1390 36 1 4.1496 4.3380 1.2484 37 1 2.6193 3.4285 1.2481 38 1 6.0354 1.5909 0.0019 39 1 8.2058 2.9179 0.8918 40 1 8.2065 2.9161 -0.8883 41 1 8.5678 4.9639 -2.1335 42 1 9.5611 7.2157 -2.1435 43 1 10.0646 8.3505 -0.0183 44 1 10.7132 9.0795 5.4398 45 1 8.5570 4.9747 2.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809015137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:27 Heat of formation + Delta-G solvation = -53.460124 kcal Electronic energy + Delta-G solvation = -27389.895804 eV Core-core repulsion = 23373.861254 eV Total energy + Delta-G solvation = -4016.034550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.58227 -39.06668 -38.49410 -37.34328 -36.36825 -35.42819 -32.94895 -32.29772 -31.80216 -29.50465 -29.07647 -27.15965 -26.83522 -25.29564 -24.81957 -22.74981 -21.73919 -21.36679 -20.24155 -18.26662 -17.61530 -17.44761 -16.89510 -16.78884 -16.48675 -15.70282 -15.33453 -15.19160 -14.93150 -14.39923 -14.36430 -14.26039 -14.03797 -13.90487 -13.51278 -13.44229 -13.26437 -12.77997 -12.65855 -12.53762 -12.40955 -12.26712 -12.10874 -11.93423 -11.79883 -11.70902 -11.50894 -11.47171 -11.23545 -10.81201 -10.75986 -10.59755 -10.43717 -10.13260 -9.77247 -9.58963 -9.30760 -8.79756 -8.04315 -7.18427 -6.40634 -3.99546 2.00639 2.31462 2.43528 2.54994 2.58899 3.00524 3.16028 3.17043 3.19495 3.45313 3.54988 4.00104 4.23988 4.38265 4.54451 4.59594 4.71090 4.86526 4.89405 4.92419 4.94000 5.09510 5.13298 5.22721 5.23833 5.32509 5.35929 5.39157 5.47555 5.49995 5.67324 5.77424 5.96182 5.98561 6.09910 6.20657 6.36798 6.62319 6.68415 6.94707 7.10621 7.21487 7.28576 7.35853 7.40692 7.47519 7.85897 8.04448 8.12725 9.05192 9.75828 10.77516 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002165 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.719994 B =12929.641087 C =13517.474725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.058 3.942 4 C -0.118 4.118 5 C 0.285 3.715 6 C -0.170 4.170 7 C 0.201 3.799 8 N -0.410 5.410 9 N -0.729 5.729 10 C 0.515 3.485 11 O -0.503 6.503 12 C -0.091 4.091 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.179 6.179 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.173 4.173 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.270 0.730 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 -18.971 -7.096 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.019 4.019 4 C -0.157 4.157 5 C 0.194 3.806 6 C -0.229 4.229 7 C -0.120 4.120 8 N -0.085 5.085 9 N -0.386 5.386 10 C 0.302 3.698 11 O -0.374 6.374 12 C -0.131 4.131 13 C -0.036 4.036 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.083 6.083 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.192 4.192 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.246 0.754 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.102 -17.444 -7.999 23.815 hybrid contribution 0.563 0.548 0.138 0.797 sum -13.539 -16.896 -7.861 23.035 Atomic orbital electron populations 1.22778 0.80498 1.02994 1.00282 1.87834 1.20108 1.27364 1.95508 1.22552 0.92798 0.85253 1.01280 1.21707 0.94474 0.93654 1.05834 1.17410 0.81788 0.93465 0.87897 1.22387 1.02230 1.03433 0.94859 1.29260 0.94303 0.93917 0.94493 1.81157 1.07706 1.08349 1.11318 1.46159 1.03894 1.10267 1.78310 1.20969 0.89829 0.83811 0.75150 1.90774 1.74417 1.26351 1.45903 1.20582 0.90036 0.97564 1.04894 1.18627 0.98280 0.93575 0.93131 1.20354 1.08137 0.96989 0.96038 1.20679 0.97341 0.94441 0.96838 1.21180 1.09383 1.02203 0.92134 1.19281 0.92767 0.91318 0.86576 1.83975 1.65767 1.33798 1.24737 1.21261 1.35258 0.95551 0.94635 0.89209 1.25264 0.97397 0.99642 0.94213 1.70031 1.43862 1.38660 0.97409 0.85798 0.79515 0.80377 0.77835 1.19549 1.20309 1.19541 1.19935 1.07738 0.94417 0.97146 0.89350 0.93745 0.93964 0.93126 0.91830 0.87820 0.89320 0.89869 0.88848 0.90907 0.75436 0.87739 0.88171 0.88043 0.87525 0.85634 0.92060 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.99 10.70 -35.23 -0.38 -3.36 16 3 C 0.06 0.39 5.33 37.16 0.20 0.59 16 4 C -0.12 -0.67 4.73 -26.73 -0.13 -0.80 16 5 C 0.28 2.45 0.79 -134.60 -0.11 2.35 16 6 C -0.17 -1.51 8.00 37.16 0.30 -1.21 16 7 C 0.20 2.50 11.49 -20.76 -0.24 2.27 16 8 N -0.41 -6.29 18.54 42.15 0.78 -5.51 16 9 N -0.73 -6.06 5.09 -50.22 -0.26 -6.31 16 10 C 0.52 6.63 7.23 -10.99 -0.08 6.55 16 11 O -0.50 -8.99 13.24 5.56 0.07 -8.91 16 12 C -0.09 -1.09 5.83 -29.04 -0.17 -1.26 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.20 -3.56 9.70 -39.53 -0.38 -3.94 16 15 C -0.07 -1.46 10.04 -39.61 -0.40 -1.85 16 16 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 17 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.18 -5.20 9.76 0.03 0.00 -5.20 16 19 C -0.39 -11.12 9.49 30.88 0.29 -10.82 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.56 13.67 55.48 0.76 -24.81 16 23 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.17 -3.69 9.65 -39.39 -0.38 -4.07 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.39 7.23 -51.93 -0.38 0.02 16 32 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 37 H 0.07 0.53 6.43 -51.93 -0.33 0.19 16 38 H 0.41 1.78 8.47 -40.82 -0.35 1.44 16 39 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.11 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -37.19 383.91 -5.47 -42.66 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.06 Total: 2.88 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -1.15 Total: -13.04 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 1.28 Total: -36.63 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.30 Total: -17.48 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.19 -5.47 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809015137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.798 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds