Wall clock time and date at job start Tue Mar 31 2020 17:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 114.00015 * 2 1 4 4 C 1.53006 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47334 * 179.97438 * 4 3 2 6 6 C 1.53005 * 109.46902 * 59.99904 * 5 4 3 7 7 C 1.47201 * 109.47043 * 300.00012 * 5 4 3 8 8 N 4.83741 * 113.89335 * 331.21874 * 2 1 3 9 9 N 1.46499 * 109.46855 * 179.97438 * 5 4 3 10 10 C 1.34782 * 119.99673 * 179.97438 * 9 5 4 11 11 O 1.21279 * 120.00167 * 0.02562 * 10 9 5 12 12 C 1.50693 * 119.99718 * 180.02562 * 10 9 5 13 13 C 1.50699 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.38329 * 119.96752 * 269.72562 * 13 12 10 15 15 C 1.38283 * 120.13675 * 179.76585 * 14 13 12 16 16 C 1.38115 * 120.07015 * 0.50828 * 15 14 13 17 17 C 1.38859 * 119.93307 * 359.74570 * 16 15 14 18 18 O 1.35755 * 120.07254 * 179.97438 * 17 16 15 19 19 C 1.34831 * 116.99844 * 354.49143 * 18 17 16 20 20 H 1.08002 * 119.99565 * 5.05652 * 19 18 17 21 21 C 1.38649 * 119.99784 * 185.05740 * 19 18 17 22 22 N 1.31555 * 120.00041 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99774 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47051 * 60.00002 * 23 21 19 25 25 H 1.48499 * 109.46960 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46767 * 299.99662 * 23 21 19 27 27 C 1.38083 * 119.96658 * 90.00213 * 13 12 10 28 28 H 1.09004 * 109.46975 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47291 * 300.00483 * 1 2 3 30 30 H 1.09001 * 109.46724 * 60.00454 * 1 2 3 31 31 H 1.09003 * 109.47313 * 299.99393 * 3 2 1 32 32 H 1.09005 * 109.47699 * 59.99648 * 3 2 1 33 33 H 1.09003 * 109.46524 * 299.99995 * 4 3 2 34 34 H 1.08996 * 109.46835 * 59.99462 * 4 3 2 35 35 H 1.08993 * 109.47281 * 60.00164 * 6 5 4 36 36 H 1.09003 * 109.46639 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47060 * 299.99795 * 6 5 4 38 38 H 0.96995 * 120.00274 * 0.02562 * 9 5 4 39 39 H 1.09003 * 109.47403 * 299.99981 * 12 10 9 40 40 H 1.09005 * 109.47393 * 60.00084 * 12 10 9 41 41 H 1.07995 * 119.92728 * 0.02562 * 14 13 12 42 42 H 1.08000 * 119.96152 * 180.25421 * 15 14 13 43 43 H 1.08000 * 120.03757 * 179.72590 * 16 15 14 44 44 H 0.97004 * 119.99501 * 180.02562 * 22 21 19 45 45 H 1.08003 * 120.02969 * 359.95679 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1579 2.5823 0.0000 6 6 3.7059 3.3424 1.2486 7 6 3.7239 3.3121 -1.2025 8 7 3.3884 3.8765 -2.1295 9 7 5.6183 2.4666 0.0012 10 6 6.3822 3.5770 0.0004 11 8 5.8607 4.6719 -0.0009 12 6 7.8845 3.4579 0.0011 13 6 8.4974 4.8346 -0.0007 14 6 8.7842 5.4618 -1.1998 15 6 9.3422 6.7270 -1.2056 16 6 9.6247 7.3642 -0.0132 17 6 9.3430 6.7352 1.1923 18 8 9.6200 7.3586 2.3659 19 6 10.2719 8.5367 2.2942 20 1 10.4769 8.9827 1.3322 21 6 10.6790 9.1755 3.4555 22 7 10.4287 8.6324 4.6273 23 14 11.5815 10.8080 3.3562 24 1 10.7195 11.8098 2.6790 25 1 11.9054 11.2787 4.7269 26 1 12.8377 10.6329 2.5839 27 6 8.7776 5.4664 1.1947 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 3.8567 0.6439 0.8909 34 1 3.8575 0.6435 -0.8890 35 1 4.0271 2.8021 2.1390 36 1 4.1496 4.3380 1.2484 37 1 2.6193 3.4285 1.2481 38 1 6.0354 1.5909 0.0019 39 1 8.2058 2.9179 0.8918 40 1 8.2065 2.9161 -0.8883 41 1 8.5678 4.9639 -2.1335 42 1 9.5611 7.2157 -2.1435 43 1 10.0646 8.3505 -0.0183 44 1 10.7132 9.0795 5.4398 45 1 8.5570 4.9747 2.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809015137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:25 Heat of formation + Delta-G solvation = -80.958506 kcal Electronic energy + Delta-G solvation = -27391.088223 eV Core-core repulsion = 23373.861254 eV Total energy + Delta-G solvation = -4017.226969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.54049 -40.66314 -39.31594 -38.38136 -37.85403 -36.40142 -34.34393 -33.88749 -33.00302 -30.88684 -30.06179 -28.41653 -27.37334 -27.20508 -25.60914 -23.42731 -23.29887 -22.85203 -21.44346 -19.55243 -19.06151 -18.64715 -18.24343 -17.50468 -16.99860 -16.82725 -16.57237 -16.35022 -16.09966 -15.81743 -15.68784 -15.51433 -15.14973 -14.99467 -14.84206 -14.70145 -14.33836 -14.11560 -13.98012 -13.63718 -13.58903 -13.33771 -12.95936 -12.89123 -12.80774 -12.72779 -12.57864 -12.45018 -12.37692 -12.21670 -12.19983 -12.12507 -12.00178 -11.20188 -10.87416 -10.77287 -10.60904 -10.45695 -9.62550 -8.97149 -8.46181 -6.14341 0.51709 0.76138 1.32857 1.34030 1.45079 1.50155 1.59288 1.64262 2.17804 2.20338 2.73236 2.79298 2.89800 3.18988 3.45826 3.65309 3.74923 3.84553 4.07684 4.10243 4.12184 4.26855 4.33012 4.39322 4.48372 4.54571 4.55819 4.58355 4.67363 4.70676 4.75103 4.75750 4.89314 4.91400 4.98899 5.07921 5.13585 5.27032 5.30825 5.33047 5.65714 5.73621 5.76004 6.03631 6.16021 6.23660 6.38241 6.53991 6.98404 7.24648 7.79553 8.76815 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021179 B = 0.002165 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.719994 B =12929.641087 C =13517.474725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.054 3.946 4 C -0.107 4.107 5 C 0.286 3.714 6 C -0.171 4.171 7 C 0.218 3.782 8 N -0.468 5.468 9 N -0.704 5.704 10 C 0.516 3.484 11 O -0.561 6.561 12 C -0.090 4.090 13 C -0.025 4.025 14 C -0.184 4.184 15 C -0.078 4.078 16 C -0.248 4.248 17 C 0.111 3.889 18 O -0.232 6.232 19 C -0.415 4.415 20 H 0.097 0.903 21 C -0.023 4.023 22 N -0.919 5.919 23 Si 1.017 2.983 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.186 4.186 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.433 0.567 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.273 0.727 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -21.685 -8.647 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.023 4.023 4 C -0.146 4.146 5 C 0.196 3.804 6 C -0.229 4.229 7 C -0.101 4.101 8 N -0.144 5.144 9 N -0.362 5.362 10 C 0.304 3.696 11 O -0.438 6.438 12 C -0.129 4.129 13 C -0.026 4.026 14 C -0.202 4.202 15 C -0.096 4.096 16 C -0.268 4.268 17 C 0.061 3.939 18 O -0.138 6.138 19 C -0.491 4.491 20 H 0.115 0.885 21 C -0.220 4.220 22 N -0.557 5.557 23 Si 0.836 3.164 24 H -0.186 1.186 25 H -0.193 1.193 26 H -0.181 1.181 27 C -0.205 4.205 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.274 0.726 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.133 0.867 44 H 0.082 0.918 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.211 -20.254 -9.600 26.540 hybrid contribution 0.421 1.134 0.407 1.276 sum -13.790 -19.121 -9.193 25.304 Atomic orbital electron populations 1.22944 0.79561 1.04033 1.00686 1.87798 1.21235 1.27652 1.95582 1.22598 0.93508 0.85095 1.01068 1.21689 0.93528 0.91483 1.07855 1.17697 0.81880 0.94802 0.86045 1.22397 1.03022 1.01568 0.95947 1.30061 0.92847 0.92775 0.94416 1.81159 1.09572 1.10267 1.13435 1.45863 1.03600 1.10378 1.76336 1.21084 0.90328 0.83846 0.74358 1.90790 1.75383 1.28726 1.48851 1.20724 0.89096 0.94429 1.08612 1.19201 0.96022 0.95885 0.91480 1.20955 1.05272 0.96222 0.97793 1.21092 0.96542 0.95168 0.96786 1.21276 1.10368 1.02230 0.92893 1.19914 0.94564 0.92981 0.86448 1.83932 1.68131 1.34736 1.27048 1.21740 1.35778 0.96115 0.95439 0.88523 1.26560 0.98137 1.03831 0.93481 1.70173 1.46251 1.41012 0.98300 0.84673 0.78371 0.74927 0.78380 1.18567 1.19344 1.18082 1.20253 1.07720 0.93597 0.98960 0.88081 0.92843 0.94105 0.94778 0.90770 0.84808 0.88289 0.87367 0.92879 0.89551 0.72564 0.84653 0.83837 0.84138 0.84328 0.86717 0.91829 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.21 10.70 -148.98 -1.59 -6.81 16 3 C 0.05 0.60 5.33 71.98 0.38 0.99 16 4 C -0.11 -0.82 4.73 30.60 0.14 -0.68 16 5 C 0.29 4.17 0.79 1.80 0.00 4.18 16 6 C -0.17 -2.73 8.00 71.98 0.58 -2.16 16 7 C 0.22 5.21 11.49 89.44 1.03 6.23 16 8 N -0.47 -14.31 18.54 20.01 0.37 -13.94 16 9 N -0.70 -9.01 5.09 -431.20 -2.19 -11.20 16 10 C 0.52 11.77 7.23 87.65 0.63 12.40 16 11 O -0.56 -19.59 13.24 -3.03 -0.04 -19.63 16 12 C -0.09 -1.76 5.83 29.10 0.17 -1.59 16 13 C -0.03 -0.84 4.37 -19.88 -0.09 -0.93 16 14 C -0.18 -6.10 9.70 22.30 0.22 -5.89 16 15 C -0.08 -2.92 10.04 22.25 0.22 -2.70 16 16 C -0.25 -11.60 9.17 22.39 0.21 -11.39 16 17 C 0.11 5.78 6.65 22.58 0.15 5.93 16 18 O -0.23 -14.39 9.76 -22.81 -0.22 -14.62 16 19 C -0.41 -24.98 9.49 67.92 0.64 -24.33 16 20 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 21 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 22 N -0.92 -57.23 13.67 21.61 0.30 -56.93 16 23 Si 1.02 44.01 29.55 68.60 2.03 46.03 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 C -0.19 -8.05 9.65 22.39 0.22 -7.83 16 28 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.03 0.49 7.23 -2.39 -0.02 0.47 16 32 H 0.07 0.64 6.43 -2.38 -0.02 0.63 16 33 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.35 6.17 -2.39 -0.01 1.33 16 37 H 0.09 1.11 6.43 -2.39 -0.02 1.10 16 38 H 0.43 1.44 8.47 -92.71 -0.79 0.66 16 39 H 0.14 1.92 8.09 -2.39 -0.02 1.90 16 40 H 0.14 1.68 8.08 -2.38 -0.02 1.66 16 41 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.12 5.45 5.64 -2.91 -0.02 5.44 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -90.16 383.91 5.11 -85.06 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.24 Total: 19.19 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 6.22 Total: -27.16 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.53 Total: -82.07 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.86 Total: -41.05 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -90.16 5.11 -85.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809015137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.097 kcal (2) G-P(sol) polarization free energy of solvation -90.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds