Wall clock time and date at job start Tue Mar 31 2020 16:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47076 * 119.99741 * 2 1 3 5 5 N 1.46511 * 109.46871 * 66.95004 * 4 2 1 6 6 C 1.46498 * 119.99693 * 277.53729 * 5 4 2 7 7 C 1.50702 * 109.47496 * 270.00255 * 6 5 4 8 8 H 1.08004 * 119.99636 * 0.02562 * 7 6 5 9 9 C 1.37870 * 119.99960 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00377 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46876 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47035 * 119.99509 * 11 9 7 14 14 H 1.48499 * 109.47277 * 239.99480 * 11 9 7 15 15 C 1.34776 * 120.00003 * 97.54354 * 5 4 2 16 16 O 1.21583 * 120.00058 * 186.64166 * 15 5 4 17 17 C 1.47611 * 119.99825 * 6.63769 * 15 5 4 18 18 C 1.39719 * 120.02985 * 315.24410 * 17 15 5 19 19 C 1.37814 * 120.05694 * 180.02562 * 18 17 15 20 20 C 1.38822 * 120.02056 * 359.93918 * 19 18 17 21 21 C 1.39668 * 120.19730 * 0.07799 * 20 19 18 22 22 C 1.37978 * 120.01863 * 359.94639 * 21 20 19 23 23 O 1.36035 * 119.45133 * 179.97438 * 21 20 19 24 24 C 1.43000 * 116.66759 * 327.21844 * 23 21 20 25 25 C 1.50750 * 109.57230 * 46.34348 * 24 23 21 26 26 O 1.21293 * 120.10906 * 148.68865 * 25 24 23 27 27 N 1.35024 * 119.80078 * 328.66025 * 25 24 23 28 28 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47342 * 299.99577 * 1 2 3 30 30 H 1.09001 * 109.47348 * 60.00385 * 1 2 3 31 31 H 1.09001 * 109.47266 * 239.99682 * 2 1 3 32 32 H 1.08994 * 109.47243 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46980 * 300.00194 * 3 2 1 34 34 H 1.09003 * 109.46807 * 59.99594 * 3 2 1 35 35 H 1.09003 * 109.47309 * 306.95456 * 4 2 1 36 36 H 1.08998 * 109.47398 * 186.94785 * 4 2 1 37 37 H 1.09003 * 109.47305 * 30.00491 * 6 5 4 38 38 H 1.09000 * 109.46751 * 150.00352 * 6 5 4 39 39 H 0.97003 * 120.00343 * 180.02562 * 10 9 7 40 40 H 1.07993 * 119.97446 * 0.02562 * 18 17 15 41 41 H 1.07995 * 119.99142 * 179.97438 * 19 18 17 42 42 H 1.08005 * 120.11944 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.45118 * 166.37178 * 24 23 21 44 44 H 1.09003 * 109.44843 * 286.32323 * 24 23 21 45 45 H 0.96993 * 120.46503 * 181.64735 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6928 -2.1423 1.1686 6 6 0.3553 -2.5930 1.5613 7 6 0.3509 -2.9341 3.0292 8 1 1.2540 -2.8256 3.6115 9 6 -0.8060 -3.3846 3.6287 10 7 -1.9059 -3.5163 2.9197 11 14 -0.8114 -3.8081 5.4480 12 1 0.5413 -3.5747 6.0145 13 1 -1.7974 -2.9503 6.1530 14 1 -1.1824 -5.2353 5.6230 15 6 2.6040 -3.0349 0.7334 16 8 2.2817 -4.1930 0.5513 17 6 3.9932 -2.6065 0.4776 18 6 4.2424 -1.4190 -0.2151 19 6 5.5392 -1.0187 -0.4546 20 6 6.5996 -1.7946 -0.0066 21 6 6.3571 -2.9829 0.6861 22 6 5.0607 -3.3885 0.9282 23 8 7.4075 -3.7318 1.1178 24 6 8.5833 -3.7174 0.3040 25 6 8.9128 -2.2980 -0.0823 26 8 10.0670 -1.9657 -0.2512 27 7 7.9190 -1.3977 -0.2404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.5786 -0.2842 2.1349 36 1 3.1228 -0.6148 1.3137 37 1 -0.3663 -1.7986 1.3707 38 1 0.0850 -3.4760 0.9823 39 1 -2.7199 -3.8329 3.3416 40 1 3.4181 -0.8142 -0.5631 41 1 5.7306 -0.1008 -0.9905 42 1 4.8713 -4.3074 1.4633 43 1 9.4164 -4.1444 0.8624 44 1 8.4091 -4.3074 -0.5958 45 1 8.1181 -0.4881 -0.5120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813547318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:44 Heat of formation + Delta-G solvation = -66.013009 kcal Electronic energy + Delta-G solvation = -28998.917598 eV Core-core repulsion = 24982.338715 eV Total energy + Delta-G solvation = -4016.578883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.10 seconds Orbital eigenvalues (eV) -41.72270 -39.93247 -38.76202 -37.38235 -36.58994 -35.33521 -33.59616 -32.37994 -30.96743 -30.32190 -28.43388 -27.45091 -26.86486 -25.70130 -24.22479 -23.64845 -22.34895 -20.54526 -20.36872 -19.49214 -18.39043 -18.09006 -17.29476 -16.59119 -16.55366 -16.32571 -15.57590 -15.51664 -14.92537 -14.86351 -14.58519 -14.30704 -14.19059 -14.07079 -13.70179 -13.37011 -13.29851 -12.96118 -12.53820 -12.46570 -12.19074 -12.10979 -11.73312 -11.58580 -11.49129 -11.32315 -11.02766 -10.98420 -10.96466 -10.66531 -10.53936 -10.35371 -10.18623 -10.14431 -9.59069 -9.13510 -8.88897 -8.43999 -8.14817 -7.69335 -6.07213 -4.11559 0.64014 1.07658 1.89676 2.40401 2.89744 3.22914 3.28377 3.36514 3.40015 3.61555 3.66615 3.92917 4.33759 4.42576 4.58824 4.67976 4.78884 4.88649 5.03098 5.07854 5.09249 5.20342 5.27289 5.31750 5.55246 5.63182 5.71308 5.74675 5.81987 5.88734 6.06256 6.09823 6.14790 6.16142 6.24765 6.26002 6.32757 6.45335 6.52424 6.65928 7.01368 7.08129 7.39331 7.40051 7.49478 7.89205 8.20514 8.31335 8.82900 8.98907 9.53432 11.00642 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003470 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.398499 B = 8067.419128 C = 9455.840947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.146 4.146 4 C 0.102 3.898 5 N -0.584 5.584 6 C 0.235 3.765 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.548 3.452 16 O -0.532 6.532 17 C -0.101 4.101 18 C -0.095 4.095 19 C -0.129 4.129 20 C 0.100 3.900 21 C 0.069 3.931 22 C -0.057 4.057 23 O -0.299 6.299 24 C 0.050 3.950 25 C 0.492 3.508 26 O -0.516 6.516 27 N -0.656 5.656 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.101 0.899 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.218 8.540 -8.265 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 C -0.204 4.204 4 C -0.022 4.022 5 N -0.314 5.314 6 C 0.116 3.884 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.334 3.666 16 O -0.410 6.410 17 C -0.105 4.105 18 C -0.114 4.114 19 C -0.150 4.150 20 C 0.004 3.996 21 C 0.023 3.977 22 C -0.076 4.076 23 O -0.213 6.213 24 C -0.028 4.028 25 C 0.279 3.721 26 O -0.391 6.391 27 N -0.303 5.303 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.171 0.829 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.119 0.881 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 15.500 7.743 -8.196 19.167 hybrid contribution 0.080 0.390 0.770 0.866 sum 15.580 8.133 -7.427 19.079 Atomic orbital electron populations 1.22081 0.94183 1.03800 1.01128 1.21690 0.97601 0.95843 0.98597 1.21825 1.00539 0.95922 1.02121 1.21858 1.00315 0.81988 0.98071 1.48127 1.15288 1.05784 1.62155 1.19627 0.76415 0.96805 0.95529 1.21489 0.96355 1.44581 0.94288 0.92371 1.24906 0.95383 0.95324 0.98358 1.69932 1.00775 1.46584 1.35956 0.86471 0.78013 0.78187 0.84940 1.19774 1.20987 1.20867 1.17992 0.84122 0.85871 0.78568 1.90785 1.80034 1.18066 1.52112 1.20089 0.94555 0.95325 1.00533 1.21789 0.97117 0.95262 0.97193 1.20525 0.90865 1.00827 1.02762 1.18124 0.84429 0.95595 1.01455 1.18359 0.88181 0.90597 1.00537 1.20537 0.87754 0.99987 0.99356 1.86309 1.21051 1.66566 1.47393 1.23195 0.88620 0.92609 0.98414 1.21604 0.85075 0.89114 0.76329 1.90811 1.19013 1.80009 1.49227 1.43610 1.04745 1.14802 1.67137 0.90371 0.92352 0.93551 0.91115 0.92830 0.92604 0.92253 0.89940 0.90490 0.93101 0.93733 0.92753 0.82948 0.84536 0.83358 0.83659 0.88142 0.74496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.20 37.16 0.30 -1.90 16 2 C -0.12 -1.47 2.15 -90.62 -0.19 -1.66 16 3 C -0.15 -1.37 9.11 37.16 0.34 -1.03 16 4 C 0.10 1.54 4.43 -4.04 -0.02 1.52 16 5 N -0.58 -11.60 2.42 -176.25 -0.43 -12.03 16 6 C 0.23 5.77 4.44 -5.19 -0.02 5.74 16 7 C -0.53 -14.42 9.39 -34.44 -0.32 -14.75 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 11 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.55 11.05 7.27 -12.44 -0.09 10.96 16 16 O -0.53 -13.03 16.53 5.29 0.09 -12.94 16 17 C -0.10 -1.55 5.14 -104.94 -0.54 -2.09 16 18 C -0.09 -1.11 7.37 -39.18 -0.29 -1.40 16 19 C -0.13 -1.22 9.92 -39.52 -0.39 -1.61 16 20 C 0.10 1.05 6.55 -83.50 -0.55 0.51 16 21 C 0.07 0.87 6.43 -39.14 -0.25 0.62 16 22 C -0.06 -0.82 9.62 -39.10 -0.38 -1.20 16 23 O -0.30 -3.48 10.45 -19.85 -0.21 -3.69 16 24 C 0.05 0.43 7.17 36.03 0.26 0.69 16 25 C 0.49 5.12 7.93 -10.85 -0.09 5.04 16 26 O -0.52 -6.74 17.95 5.55 0.10 -6.64 16 27 N -0.66 -6.06 5.45 -9.65 -0.05 -6.12 16 28 H 0.08 1.36 5.26 -51.93 -0.27 1.09 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 32 H 0.05 0.42 8.02 -51.93 -0.42 0.00 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 36 H 0.08 1.01 4.97 -51.93 -0.26 0.75 16 37 H 0.05 1.23 5.05 -51.93 -0.26 0.97 16 38 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.15 1.64 3.40 -52.49 -0.18 1.46 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.42 2.95 8.88 -40.82 -0.36 2.59 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -33.72 365.99 -7.40 -41.12 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.81 Total: 2.31 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.33 Total: 1.06 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.26 Total: -43.12 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.02 Total: -23.28 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.72 -7.40 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813547318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.889 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.10 seconds