Wall clock time and date at job start Tue Mar 31 2020 16:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47076 * 119.99741 * 2 1 3 5 5 N 1.46511 * 109.46871 * 66.95004 * 4 2 1 6 6 C 1.46498 * 119.99693 * 277.53729 * 5 4 2 7 7 C 1.50702 * 109.47496 * 270.00255 * 6 5 4 8 8 H 1.08004 * 119.99636 * 0.02562 * 7 6 5 9 9 C 1.37870 * 119.99960 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00377 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99962 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46876 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47035 * 119.99509 * 11 9 7 14 14 H 1.48499 * 109.47277 * 239.99480 * 11 9 7 15 15 C 1.34776 * 120.00003 * 97.54354 * 5 4 2 16 16 O 1.21583 * 120.00058 * 186.64166 * 15 5 4 17 17 C 1.47611 * 119.99825 * 6.63769 * 15 5 4 18 18 C 1.39719 * 120.02985 * 315.24410 * 17 15 5 19 19 C 1.37814 * 120.05694 * 180.02562 * 18 17 15 20 20 C 1.38822 * 120.02056 * 359.93918 * 19 18 17 21 21 C 1.39668 * 120.19730 * 0.07799 * 20 19 18 22 22 C 1.37978 * 120.01863 * 359.94639 * 21 20 19 23 23 O 1.36035 * 119.45133 * 179.97438 * 21 20 19 24 24 C 1.43000 * 116.66759 * 327.21844 * 23 21 20 25 25 C 1.50750 * 109.57230 * 46.34348 * 24 23 21 26 26 O 1.21293 * 120.10906 * 148.68865 * 25 24 23 27 27 N 1.35024 * 119.80078 * 328.66025 * 25 24 23 28 28 H 1.09005 * 109.46662 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47342 * 299.99577 * 1 2 3 30 30 H 1.09001 * 109.47348 * 60.00385 * 1 2 3 31 31 H 1.09001 * 109.47266 * 239.99682 * 2 1 3 32 32 H 1.08994 * 109.47243 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46980 * 300.00194 * 3 2 1 34 34 H 1.09003 * 109.46807 * 59.99594 * 3 2 1 35 35 H 1.09003 * 109.47309 * 306.95456 * 4 2 1 36 36 H 1.08998 * 109.47398 * 186.94785 * 4 2 1 37 37 H 1.09003 * 109.47305 * 30.00491 * 6 5 4 38 38 H 1.09000 * 109.46751 * 150.00352 * 6 5 4 39 39 H 0.97003 * 120.00343 * 180.02562 * 10 9 7 40 40 H 1.07993 * 119.97446 * 0.02562 * 18 17 15 41 41 H 1.07995 * 119.99142 * 179.97438 * 19 18 17 42 42 H 1.08005 * 120.11944 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.45118 * 166.37178 * 24 23 21 44 44 H 1.09003 * 109.44843 * 286.32323 * 24 23 21 45 45 H 0.96993 * 120.46503 * 181.64735 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6928 -2.1423 1.1686 6 6 0.3553 -2.5930 1.5613 7 6 0.3509 -2.9341 3.0292 8 1 1.2540 -2.8256 3.6115 9 6 -0.8060 -3.3846 3.6287 10 7 -1.9059 -3.5163 2.9197 11 14 -0.8114 -3.8081 5.4480 12 1 0.5413 -3.5747 6.0145 13 1 -1.7974 -2.9503 6.1530 14 1 -1.1824 -5.2353 5.6230 15 6 2.6040 -3.0349 0.7334 16 8 2.2817 -4.1930 0.5513 17 6 3.9932 -2.6065 0.4776 18 6 4.2424 -1.4190 -0.2151 19 6 5.5392 -1.0187 -0.4546 20 6 6.5996 -1.7946 -0.0066 21 6 6.3571 -2.9829 0.6861 22 6 5.0607 -3.3885 0.9282 23 8 7.4075 -3.7318 1.1178 24 6 8.5833 -3.7174 0.3040 25 6 8.9128 -2.2980 -0.0823 26 8 10.0670 -1.9657 -0.2512 27 7 7.9190 -1.3977 -0.2404 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.5786 -0.2842 2.1349 36 1 3.1228 -0.6148 1.3137 37 1 -0.3663 -1.7986 1.3707 38 1 0.0850 -3.4760 0.9823 39 1 -2.7199 -3.8329 3.3416 40 1 3.4181 -0.8142 -0.5631 41 1 5.7306 -0.1008 -0.9905 42 1 4.8713 -4.3074 1.4633 43 1 9.4164 -4.1444 0.8624 44 1 8.4091 -4.3074 -0.5958 45 1 8.1181 -0.4881 -0.5120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813547318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:39 Heat of formation + Delta-G solvation = -89.560651 kcal Electronic energy + Delta-G solvation = -28999.938700 eV Core-core repulsion = 24982.338715 eV Total energy + Delta-G solvation = -4017.599986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.56 seconds Orbital eigenvalues (eV) -42.60984 -41.24827 -39.76941 -38.38890 -37.96054 -36.29329 -35.31398 -34.13771 -31.91909 -31.45536 -29.70313 -28.69177 -27.93266 -27.01897 -25.65730 -24.70316 -23.78149 -21.58725 -21.47427 -20.48462 -19.49427 -19.00201 -18.66569 -18.32457 -17.62625 -17.54405 -16.96173 -16.46380 -16.37256 -16.07511 -15.80357 -15.41287 -15.34918 -15.00206 -14.99263 -14.62679 -14.27436 -14.21192 -14.02293 -13.63590 -13.50163 -13.33318 -12.99509 -12.93186 -12.68548 -12.65583 -12.59650 -12.29518 -12.15585 -12.01791 -11.92302 -11.75420 -11.52725 -11.37000 -11.24069 -10.74182 -10.58303 -9.84635 -9.40367 -9.07147 -8.20575 -6.34304 -0.35914 0.13744 1.02949 1.36494 1.38921 1.50200 1.61660 1.77642 2.13880 2.30688 2.44343 2.65041 2.85499 3.09047 3.47554 3.53010 3.92235 3.97414 3.98371 4.06603 4.08325 4.14617 4.27865 4.33847 4.60314 4.63796 4.68795 4.82988 4.87301 4.90315 4.97326 5.08226 5.12220 5.17794 5.24351 5.27759 5.32753 5.36430 5.44171 5.50277 5.57837 5.61979 5.66523 5.87370 6.10320 6.13499 6.64327 6.69695 6.76663 7.26207 7.41879 8.86095 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.003470 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.398499 B = 8067.419128 C = 9455.840947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.097 3.903 5 N -0.587 5.587 6 C 0.251 3.749 7 C -0.545 4.545 8 H 0.050 0.950 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.962 3.038 12 H -0.269 1.269 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.541 3.459 16 O -0.594 6.594 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.104 4.104 20 C 0.114 3.886 21 C 0.067 3.933 22 C -0.074 4.074 23 O -0.313 6.313 24 C 0.045 3.955 25 C 0.493 3.507 26 O -0.542 6.542 27 N -0.645 5.645 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.054 0.946 38 H -0.005 1.005 39 H 0.267 0.733 40 H 0.166 0.834 41 H 0.187 0.813 42 H 0.125 0.875 43 H 0.168 0.832 44 H 0.122 0.878 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.817 11.474 -8.845 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.197 4.197 4 C -0.025 4.025 5 N -0.315 5.315 6 C 0.131 3.869 7 C -0.584 4.584 8 H 0.069 0.931 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.330 3.670 16 O -0.476 6.476 17 C -0.125 4.125 18 C -0.104 4.104 19 C -0.124 4.124 20 C 0.017 3.983 21 C 0.021 3.979 22 C -0.095 4.095 23 O -0.228 6.228 24 C -0.032 4.032 25 C 0.281 3.719 26 O -0.419 6.419 27 N -0.293 5.293 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.013 0.987 39 H 0.076 0.924 40 H 0.183 0.817 41 H 0.204 0.796 42 H 0.143 0.857 43 H 0.185 0.815 44 H 0.140 0.860 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 18.121 10.745 -8.782 22.824 hybrid contribution -0.650 -0.532 0.898 1.229 sum 17.471 10.213 -7.885 21.719 Atomic orbital electron populations 1.22033 0.96001 1.01195 1.01928 1.21650 0.95996 0.98132 0.97199 1.21794 1.02199 0.92813 1.02900 1.22186 1.02001 0.79052 0.99230 1.48100 1.13657 1.08113 1.61646 1.19110 0.79298 0.94976 0.93550 1.21782 0.96181 1.44846 0.95567 0.93143 1.25764 0.95000 0.95073 1.02939 1.70044 1.01377 1.47223 1.37845 0.85447 0.78378 0.77915 0.79564 1.19321 1.19394 1.20832 1.18794 0.86002 0.84987 0.77231 1.90731 1.81427 1.20658 1.54760 1.19642 0.91290 0.97801 1.03797 1.21863 0.98804 0.93622 0.96131 1.20917 0.88917 1.01615 1.00926 1.18166 0.85373 0.94651 1.00090 1.18266 0.87540 0.91488 1.00597 1.20331 0.88979 0.99586 1.00559 1.86296 1.21548 1.66656 1.48260 1.23511 0.88027 0.92154 0.99505 1.21828 0.84721 0.89710 0.75598 1.90812 1.20025 1.80522 1.50522 1.43528 1.03855 1.15442 1.66435 0.94552 0.93063 0.91223 0.90336 0.90148 0.90970 0.92417 0.91194 0.87756 0.92879 0.98716 0.92442 0.81666 0.79630 0.85735 0.81463 0.86030 0.72889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 8.20 71.98 0.59 -3.82 16 2 C -0.11 -2.56 2.15 -10.79 -0.02 -2.58 16 3 C -0.14 -2.03 9.11 71.98 0.66 -1.37 16 4 C 0.10 2.89 4.43 86.38 0.38 3.28 16 5 N -0.59 -24.53 2.42 -829.80 -2.01 -26.54 16 6 C 0.25 13.27 4.44 85.63 0.38 13.65 16 7 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 9 C 0.01 0.65 5.46 84.65 0.46 1.12 16 10 N -0.93 -55.38 13.29 21.44 0.28 -55.10 16 11 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 15 C 0.54 23.12 7.27 86.72 0.63 23.75 16 16 O -0.59 -31.66 16.53 -3.98 -0.07 -31.73 16 17 C -0.12 -3.74 5.14 -20.07 -0.10 -3.84 16 18 C -0.09 -1.75 7.37 22.53 0.17 -1.59 16 19 C -0.10 -1.43 9.92 22.31 0.22 -1.21 16 20 C 0.11 1.98 6.55 38.36 0.25 2.23 16 21 C 0.07 1.58 6.43 22.55 0.15 1.73 16 22 C -0.07 -2.22 9.62 22.58 0.22 -2.00 16 23 O -0.31 -6.86 10.45 -93.95 -0.98 -7.84 16 24 C 0.05 0.67 7.17 71.25 0.51 1.18 16 25 C 0.49 8.77 7.93 87.63 0.70 9.47 16 26 O -0.54 -12.74 17.95 -3.07 -0.06 -12.79 16 27 N -0.65 -9.29 5.45 -302.70 -1.65 -10.94 16 28 H 0.04 1.33 5.26 -2.38 -0.01 1.32 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.73 6.33 -2.39 -0.02 1.71 16 32 H 0.08 0.78 8.02 -2.39 -0.02 0.76 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 36 H 0.10 2.52 4.97 -2.39 -0.01 2.51 16 37 H 0.05 2.76 5.05 -2.39 -0.01 2.75 16 38 H -0.01 -0.33 7.34 -2.39 -0.02 -0.35 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.17 2.95 3.40 -2.91 -0.01 2.94 16 41 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 42 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 43 H 0.17 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.43 4.01 8.88 -92.71 -0.82 3.18 16 Total: -1.00 -80.42 365.99 3.20 -77.22 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.22 Total: 11.83 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.42 Total: 8.94 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -3.37 Total: -92.58 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.10 Total: -52.36 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -80.42 3.20 -77.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813547318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.339 kcal (2) G-P(sol) polarization free energy of solvation -80.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.56 seconds