Wall clock time and date at job start Tue Mar 31 2020 16:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 C 1.50704 * 109.47332 * 239.99825 * 2 1 3 5 5 H 1.08000 * 119.99652 * 240.00121 * 4 2 1 6 6 C 1.37873 * 119.99563 * 59.99885 * 4 2 1 7 7 N 1.31510 * 120.00551 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99449 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47225 * 60.00269 * 8 6 4 10 10 H 1.48501 * 109.46850 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47285 * 299.99807 * 8 6 4 12 12 C 1.53004 * 109.47232 * 119.99479 * 2 1 3 13 13 N 1.46492 * 109.47199 * 300.00310 * 12 2 1 14 14 C 1.34770 * 124.17842 * 89.97313 * 13 12 2 15 15 O 1.21239 * 127.15851 * 0.07119 * 14 13 12 16 16 C 1.51583 * 105.68668 * 180.02562 * 14 13 12 17 17 N 1.47312 * 103.59055 * 359.97438 * 16 14 13 18 18 C 1.46502 * 126.68809 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47146 * 90.00439 * 18 17 16 20 20 C 1.38174 * 120.03070 * 260.31969 * 19 18 17 21 21 C 1.38240 * 120.05836 * 180.29782 * 20 19 18 22 22 C 1.38289 * 120.10976 * 359.67645 * 21 20 19 23 23 C 1.38116 * 120.05813 * 0.02562 * 22 21 20 24 24 C 1.38709 * 120.03239 * 79.99652 * 19 18 17 25 25 O 1.35905 * 120.05346 * 0.02562 * 24 19 18 26 26 C 1.33795 * 124.17962 * 270.27693 * 13 12 2 27 27 O 1.21540 * 123.77091 * 359.97438 * 26 13 12 28 28 H 1.09002 * 109.47253 * 300.00215 * 1 2 3 29 29 H 1.09003 * 109.46852 * 60.00291 * 1 2 3 30 30 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46833 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46553 * 299.99471 * 3 2 1 33 33 H 1.08994 * 109.47579 * 59.99714 * 3 2 1 34 34 H 0.97003 * 120.00460 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47181 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.46478 * 60.00302 * 12 2 1 37 37 H 1.09003 * 110.59732 * 241.47434 * 16 14 13 38 38 H 1.08997 * 110.73084 * 118.58853 * 16 14 13 39 39 H 1.08995 * 109.47252 * 330.00381 * 18 17 16 40 40 H 1.09002 * 109.47346 * 210.00066 * 18 17 16 41 41 H 1.08006 * 119.96854 * 359.97438 * 20 19 18 42 42 H 1.08002 * 119.94662 * 179.70494 * 21 20 19 43 43 H 1.08005 * 119.96740 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.03068 * 180.02562 * 23 22 21 45 45 H 0.96705 * 113.99576 * 269.72355 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8260 -0.4208 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 0.3887 -0.3170 3.0633 15 8 -0.4195 -1.1636 2.7469 16 6 0.3018 0.6386 4.2367 17 7 1.5426 1.4260 4.1345 18 6 1.9711 2.5044 5.0288 19 6 2.7868 1.9272 6.1569 20 6 2.2034 1.7072 7.3899 21 6 2.9527 1.1835 8.4269 22 6 4.2858 0.8722 8.2312 23 6 4.8721 1.0845 6.9989 24 6 4.1221 1.6100 5.9564 25 8 4.6968 1.8198 4.7428 26 6 2.2023 0.9665 3.0560 27 8 3.2718 1.4051 2.6805 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 0.7087 1.1612 -3.4844 35 1 3.1299 -0.7215 1.2491 36 1 1.6767 -1.7488 1.2493 37 1 0.2733 0.0889 5.1776 38 1 -0.5714 1.2844 4.1446 39 1 1.0947 3.0091 5.4354 40 1 2.5764 3.2195 4.4718 41 1 1.1624 1.9495 7.5452 42 1 2.4961 1.0167 9.3913 43 1 4.8690 0.4628 9.0429 44 1 5.9132 0.8409 6.8464 45 1 4.6356 1.0639 4.1428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819170151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:25 Heat of formation + Delta-G solvation = -50.045261 kcal Electronic energy + Delta-G solvation = -29862.733163 eV Core-core repulsion = 25846.846693 eV Total energy + Delta-G solvation = -4015.886470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.07970 -39.94651 -38.19013 -36.64135 -36.49426 -35.70296 -34.29688 -32.16728 -30.85506 -29.99811 -28.23045 -26.41337 -25.67418 -25.48849 -24.89021 -22.77383 -22.28335 -21.55505 -20.20995 -18.66687 -18.26307 -17.26737 -16.87185 -16.37482 -16.20018 -15.89566 -15.79557 -15.26902 -14.92805 -14.80276 -14.55068 -14.20153 -13.86289 -13.79803 -13.71882 -13.19549 -12.72795 -12.66208 -12.51408 -12.28990 -12.12767 -12.10548 -11.61813 -11.22113 -11.13426 -10.78795 -10.67021 -10.53464 -10.46206 -10.29276 -10.20666 -10.04182 -9.78516 -9.43820 -9.16463 -9.07424 -8.77410 -8.69029 -8.63044 -8.31759 -5.96029 -4.07643 0.94799 1.09661 1.97229 2.44156 3.19858 3.32825 3.37270 3.39141 3.40268 3.53939 4.23120 4.29648 4.43165 4.51234 4.54865 4.80165 4.83317 5.03911 5.07999 5.20469 5.26684 5.30048 5.48498 5.66489 5.68831 5.76912 6.05938 6.08409 6.15546 6.22639 6.27054 6.33972 6.44724 6.54253 6.64636 6.86117 6.99126 7.10139 7.15412 7.48728 7.54008 7.68007 7.71625 7.74281 7.81824 8.12050 8.17926 8.42175 8.48041 8.91716 9.57496 11.04916 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.003329 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.111441 B = 8407.874333 C = 8994.149261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.055 3.945 3 C -0.119 4.119 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.562 5.562 14 C 0.519 3.481 15 O -0.469 6.469 16 C 0.061 3.939 17 N -0.629 5.629 18 C 0.197 3.803 19 C -0.146 4.146 20 C -0.088 4.088 21 C -0.140 4.140 22 C -0.098 4.098 23 C -0.155 4.155 24 C 0.136 3.864 25 O -0.489 6.489 26 C 0.699 3.301 27 O -0.528 6.528 28 H -0.002 1.002 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.001 0.999 34 H 0.260 0.740 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 2.151 21.974 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 C -0.177 4.177 4 C -0.547 4.547 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.306 5.306 14 C 0.306 3.694 15 O -0.340 6.340 16 C -0.066 4.066 17 N -0.369 5.369 18 C 0.076 3.924 19 C -0.148 4.148 20 C -0.107 4.107 21 C -0.158 4.158 22 C -0.116 4.116 23 C -0.174 4.174 24 C 0.090 3.910 25 O -0.304 6.304 26 C 0.403 3.597 27 O -0.402 6.402 28 H 0.017 0.983 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 1.412 2.627 21.623 21.827 hybrid contribution 0.169 -0.901 -0.969 1.334 sum 1.581 1.726 20.654 20.786 Atomic orbital electron populations 1.21777 0.97513 0.99169 0.99587 1.18463 0.92943 0.93176 0.89993 1.21727 0.98784 0.97668 0.99479 1.20883 1.31775 1.12126 0.89908 0.92556 1.24868 0.94813 0.94878 0.98807 1.69818 1.36404 1.22662 1.23264 0.86636 0.79203 0.79735 0.82271 1.20307 1.21340 1.20256 1.22236 0.99535 0.95555 0.81795 1.46607 1.21313 1.33705 1.28928 1.20666 0.81245 0.83683 0.83806 1.90799 1.42267 1.32725 1.68163 1.22485 0.89865 0.94593 0.99644 1.47687 1.21871 1.38331 1.28997 1.20017 0.98053 0.86649 0.87654 1.20638 0.94110 1.03720 0.96330 1.20976 0.99677 0.97964 0.92049 1.21111 0.94463 1.01052 0.99149 1.21065 0.95159 0.98766 0.96627 1.21513 1.00820 1.01309 0.93747 1.18508 0.90112 0.95315 0.87059 1.84787 1.78671 1.44211 1.22722 1.15950 0.84196 0.79791 0.79812 1.90878 1.20396 1.61262 1.67690 0.98276 0.89913 0.95220 0.95007 0.90241 0.98023 0.92970 0.89977 0.90210 0.86954 0.86589 0.88959 0.87776 0.85597 0.85851 0.85804 0.85451 0.73913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 7.26 37.16 0.27 -2.75 16 2 C 0.06 1.34 0.57 -155.65 -0.09 1.25 16 3 C -0.12 -2.95 7.11 37.16 0.26 -2.68 16 4 C -0.51 -13.55 8.01 -34.44 -0.28 -13.82 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 6 C 0.07 1.84 5.15 -17.82 -0.09 1.74 16 7 N -0.88 -24.51 9.35 55.43 0.52 -23.99 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.13 2.66 4.67 -4.04 -0.02 2.64 16 13 N -0.56 -10.06 2.14 -120.74 -0.26 -10.32 16 14 C 0.52 8.46 6.66 -10.55 -0.07 8.39 16 15 O -0.47 -8.93 16.87 5.59 0.09 -8.83 16 16 C 0.06 0.67 7.66 -4.32 -0.03 0.64 16 17 N -0.63 -7.96 3.00 -181.40 -0.54 -8.51 16 18 C 0.20 2.07 5.94 -5.19 -0.03 2.04 16 19 C -0.15 -1.54 5.48 -104.47 -0.57 -2.11 16 20 C -0.09 -0.73 9.67 -39.60 -0.38 -1.11 16 21 C -0.14 -1.10 10.04 -39.56 -0.40 -1.50 16 22 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 23 C -0.16 -1.62 9.99 -39.43 -0.39 -2.02 16 24 C 0.14 1.66 6.68 -39.22 -0.26 1.40 16 25 O -0.49 -7.02 11.57 -40.71 -0.47 -7.49 16 26 C 0.70 11.70 6.61 -88.02 -0.58 11.12 16 27 O -0.53 -10.01 12.49 -15.94 -0.20 -10.21 16 28 H 0.00 -0.04 6.19 -51.93 -0.32 -0.36 16 29 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 33 H 0.00 0.02 6.16 -51.93 -0.32 -0.30 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 1.69 7.87 -51.93 -0.41 1.28 16 36 H 0.08 1.64 8.00 -51.93 -0.42 1.23 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 40 H 0.10 1.29 7.74 -51.93 -0.40 0.88 16 41 H 0.13 0.73 8.04 -52.48 -0.42 0.31 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.40 5.75 6.65 45.56 0.30 6.06 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -31.39 361.34 -9.03 -40.42 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.53 Total: 5.44 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -3.06 Total: 1.99 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.28 Total: -42.81 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.58 Total: -26.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.39 -9.03 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819170151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.627 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds