Wall clock time and date at job start Tue Mar 31 2020 16:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 C 1.50704 * 109.47332 * 239.99825 * 2 1 3 5 5 H 1.08000 * 119.99652 * 240.00121 * 4 2 1 6 6 C 1.37873 * 119.99563 * 59.99885 * 4 2 1 7 7 N 1.31510 * 120.00551 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99449 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47225 * 60.00269 * 8 6 4 10 10 H 1.48501 * 109.46850 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47285 * 299.99807 * 8 6 4 12 12 C 1.53004 * 109.47232 * 119.99479 * 2 1 3 13 13 N 1.46492 * 109.47199 * 300.00310 * 12 2 1 14 14 C 1.34770 * 124.17842 * 89.97313 * 13 12 2 15 15 O 1.21239 * 127.15851 * 0.07119 * 14 13 12 16 16 C 1.51583 * 105.68668 * 180.02562 * 14 13 12 17 17 N 1.47312 * 103.59055 * 359.97438 * 16 14 13 18 18 C 1.46502 * 126.68809 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47146 * 90.00439 * 18 17 16 20 20 C 1.38174 * 120.03070 * 260.31969 * 19 18 17 21 21 C 1.38240 * 120.05836 * 180.29782 * 20 19 18 22 22 C 1.38289 * 120.10976 * 359.67645 * 21 20 19 23 23 C 1.38116 * 120.05813 * 0.02562 * 22 21 20 24 24 C 1.38709 * 120.03239 * 79.99652 * 19 18 17 25 25 O 1.35905 * 120.05346 * 0.02562 * 24 19 18 26 26 C 1.33795 * 124.17962 * 270.27693 * 13 12 2 27 27 O 1.21540 * 123.77091 * 359.97438 * 26 13 12 28 28 H 1.09002 * 109.47253 * 300.00215 * 1 2 3 29 29 H 1.09003 * 109.46852 * 60.00291 * 1 2 3 30 30 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46833 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46553 * 299.99471 * 3 2 1 33 33 H 1.08994 * 109.47579 * 59.99714 * 3 2 1 34 34 H 0.97003 * 120.00460 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47181 * 179.97438 * 12 2 1 36 36 H 1.08996 * 109.46478 * 60.00302 * 12 2 1 37 37 H 1.09003 * 110.59732 * 241.47434 * 16 14 13 38 38 H 1.08997 * 110.73084 * 118.58853 * 16 14 13 39 39 H 1.08995 * 109.47252 * 330.00381 * 18 17 16 40 40 H 1.09002 * 109.47346 * 210.00066 * 18 17 16 41 41 H 1.08006 * 119.96854 * 359.97438 * 20 19 18 42 42 H 1.08002 * 119.94662 * 179.70494 * 21 20 19 43 43 H 1.08005 * 119.96740 * 180.02562 * 22 21 20 44 44 H 1.08003 * 120.03068 * 180.02562 * 23 22 21 45 45 H 0.96705 * 113.99576 * 269.72355 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8260 -0.4208 -5.2204 11 1 3.8064 -1.1210 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 0.3887 -0.3170 3.0633 15 8 -0.4195 -1.1636 2.7469 16 6 0.3018 0.6386 4.2367 17 7 1.5426 1.4260 4.1345 18 6 1.9711 2.5044 5.0288 19 6 2.7868 1.9272 6.1569 20 6 2.2034 1.7072 7.3899 21 6 2.9527 1.1835 8.4269 22 6 4.2858 0.8722 8.2312 23 6 4.8721 1.0845 6.9989 24 6 4.1221 1.6100 5.9564 25 8 4.6968 1.8198 4.7428 26 6 2.2023 0.9665 3.0560 27 8 3.2718 1.4051 2.6805 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 0.7087 1.1612 -3.4844 35 1 3.1299 -0.7215 1.2491 36 1 1.6767 -1.7488 1.2493 37 1 0.2733 0.0889 5.1776 38 1 -0.5714 1.2844 4.1446 39 1 1.0947 3.0091 5.4354 40 1 2.5764 3.2195 4.4718 41 1 1.1624 1.9495 7.5452 42 1 2.4961 1.0167 9.3913 43 1 4.8690 0.4628 9.0429 44 1 5.9132 0.8409 6.8464 45 1 4.6356 1.0639 4.1428 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819170151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:23 Heat of formation + Delta-G solvation = -68.514421 kcal Electronic energy + Delta-G solvation = -29863.534046 eV Core-core repulsion = 25846.846693 eV Total energy + Delta-G solvation = -4016.687353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.33005 -40.75421 -39.47768 -38.16450 -37.52526 -36.99367 -35.69919 -33.54511 -32.32900 -30.76514 -29.25437 -27.78237 -27.65672 -27.21221 -26.44536 -23.49832 -23.39386 -22.55511 -21.54449 -20.31986 -19.14663 -18.53781 -18.11632 -17.86032 -17.53085 -17.00872 -16.78376 -16.61691 -16.15639 -16.11890 -15.74817 -15.24275 -15.18372 -14.95312 -14.78007 -14.49413 -14.39519 -14.11258 -13.79006 -13.28284 -13.19230 -13.06310 -13.02963 -12.88288 -12.69412 -12.57008 -12.34958 -12.25804 -12.19618 -11.95194 -11.69929 -11.44318 -11.35165 -11.10999 -10.77099 -10.42539 -10.38943 -9.97494 -9.82675 -9.46712 -8.02579 -6.20636 0.20369 0.39779 0.74495 1.29306 1.44264 1.44631 1.51751 2.06283 2.18378 2.45367 2.79094 3.16124 3.20581 3.43595 3.71659 3.81241 4.02414 4.20258 4.29474 4.32068 4.37502 4.43298 4.55787 4.56139 4.58094 4.61993 4.72242 4.89349 4.92985 4.95143 5.00815 5.09411 5.11954 5.17628 5.44280 5.46100 5.49457 5.57894 5.58622 5.61009 5.63425 5.96441 6.04767 6.12733 6.29879 6.37187 6.51468 6.79161 6.84706 7.19928 7.47078 8.96512 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021565 B = 0.003329 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.111441 B = 8407.874333 C = 8994.149261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.049 3.951 3 C -0.097 4.097 4 C -0.529 4.529 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.140 3.860 13 N -0.573 5.573 14 C 0.508 3.492 15 O -0.503 6.503 16 C 0.075 3.925 17 N -0.615 5.615 18 C 0.197 3.803 19 C -0.155 4.155 20 C -0.080 4.080 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.172 4.172 24 C 0.097 3.903 25 O -0.508 6.508 26 C 0.691 3.309 27 O -0.560 6.560 28 H 0.012 0.988 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 2.216 25.106 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 C -0.154 4.154 4 C -0.567 4.567 5 H 0.073 0.927 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.778 3.222 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.019 3.981 13 N -0.316 5.316 14 C 0.298 3.702 15 O -0.376 6.376 16 C -0.049 4.049 17 N -0.354 5.354 18 C 0.077 3.923 19 C -0.157 4.157 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.191 4.191 24 C 0.052 3.948 25 O -0.323 6.323 26 C 0.393 3.607 27 O -0.436 6.436 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.096 0.904 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.039 2.718 24.818 24.967 hybrid contribution 0.632 -0.910 -1.813 2.125 sum 0.592 1.808 23.005 23.083 Atomic orbital electron populations 1.21537 0.97641 0.98133 0.98840 1.18458 0.92715 0.92869 0.91133 1.21463 0.97499 0.98040 0.98446 1.21248 1.31887 1.12377 0.91201 0.92657 1.25573 0.95054 0.95561 1.01429 1.69952 1.37123 1.23613 1.23635 0.85717 0.78684 0.78806 0.79028 1.19760 1.21104 1.19935 1.21744 0.99123 0.95244 0.81990 1.46601 1.22425 1.34215 1.28368 1.21577 0.79940 0.83889 0.84795 1.90782 1.43015 1.34362 1.69417 1.22711 0.89920 0.93799 0.98509 1.47794 1.21700 1.38238 1.27635 1.20237 0.99571 0.85559 0.86931 1.20681 0.93310 1.04274 0.97394 1.21362 1.01289 0.96488 0.90719 1.21551 0.93971 0.99402 1.00369 1.21402 0.96062 0.98045 0.96206 1.21644 1.00957 1.01957 0.94508 1.18931 0.91640 0.97718 0.86504 1.84781 1.79409 1.44210 1.23858 1.16135 0.84052 0.79637 0.80832 1.90865 1.21784 1.62136 1.68831 0.96915 0.92509 0.96249 0.96504 0.92876 0.97112 0.93129 0.90548 0.90464 0.82801 0.83016 0.84435 0.90404 0.82007 0.82710 0.83554 0.85763 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.18 7.26 71.98 0.52 -4.66 16 2 C 0.05 2.45 0.57 -52.92 -0.03 2.42 16 3 C -0.10 -4.94 7.11 71.98 0.51 -4.43 16 4 C -0.53 -28.83 8.01 25.60 0.21 -28.62 16 5 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 6 C 0.02 1.28 5.15 84.65 0.44 1.71 16 7 N -0.90 -51.33 9.35 21.45 0.20 -51.13 16 8 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 C 0.14 5.95 4.67 86.38 0.40 6.36 16 13 N -0.57 -20.36 2.14 -773.14 -1.65 -22.01 16 14 C 0.51 15.71 6.66 87.94 0.59 16.30 16 15 O -0.50 -18.63 16.87 -2.90 -0.05 -18.68 16 16 C 0.08 1.35 7.66 85.76 0.66 2.01 16 17 N -0.62 -14.06 3.00 -846.24 -2.54 -16.60 16 18 C 0.20 3.60 5.94 85.63 0.51 4.11 16 19 C -0.15 -2.87 5.48 -19.77 -0.11 -2.98 16 20 C -0.08 -0.95 9.67 22.25 0.22 -0.74 16 21 C -0.14 -1.52 10.04 22.28 0.22 -1.30 16 22 C -0.10 -1.42 10.04 22.25 0.22 -1.20 16 23 C -0.17 -3.51 9.99 22.36 0.22 -3.28 16 24 C 0.10 2.36 6.68 22.51 0.15 2.51 16 25 O -0.51 -15.49 11.57 -72.14 -0.83 -16.33 16 26 C 0.69 22.90 6.61 179.44 1.19 24.09 16 27 O -0.56 -21.96 12.49 16.49 0.21 -21.76 16 28 H 0.01 0.55 6.19 -2.39 -0.01 0.54 16 29 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 32 H 0.05 2.98 6.07 -2.39 -0.01 2.97 16 33 H 0.01 0.48 6.16 -2.39 -0.01 0.47 16 34 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.08 3.28 7.87 -2.39 -0.02 3.26 16 36 H 0.08 3.27 8.00 -2.39 -0.02 3.25 16 37 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.14 1.27 8.01 -2.39 -0.02 1.25 16 40 H 0.08 1.88 7.74 -2.39 -0.02 1.86 16 41 H 0.16 0.76 8.04 -2.91 -0.02 0.73 16 42 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 45 H 0.39 12.30 6.65 -74.05 -0.49 11.80 16 Total: -1.00 -72.33 361.34 3.80 -68.53 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.53 Total: 19.89 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.91 Total: 12.28 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -3.99 Total: -89.74 kcal Atomic # 8 Polarization: -56.09 SS G_CDS: -0.68 Total: -56.77 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.33 3.80 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819170151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.020 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds