Wall clock time and date at job start Tue Mar 31 2020 16:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47583 * 2 1 4 4 C 1.50700 * 109.47309 * 239.99807 * 2 1 3 5 5 H 1.07999 * 120.00679 * 240.00374 * 4 2 1 6 6 C 1.37884 * 119.99668 * 59.99935 * 4 2 1 7 7 N 1.31507 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99595 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47192 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47033 * 120.00339 * 8 6 4 11 11 H 1.48504 * 109.46927 * 239.99928 * 8 6 4 12 12 C 1.53002 * 109.47367 * 120.00016 * 2 1 3 13 13 N 1.46500 * 109.46917 * 299.99963 * 12 2 1 14 14 C 1.34777 * 120.00318 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99481 * 359.97438 * 14 13 12 16 16 C 1.47633 * 120.00370 * 179.97438 * 14 13 12 17 17 C 1.39969 * 119.98933 * 359.97438 * 16 14 13 18 18 C 1.37704 * 120.36633 * 179.86254 * 17 16 14 19 19 C 1.38738 * 120.11506 * 0.02562 * 18 17 16 20 20 C 1.40653 * 119.92780 * 0.22665 * 19 18 17 21 21 C 1.38949 * 119.99479 * 359.66173 * 20 19 18 22 22 C 1.47586 * 118.96145 * 179.62063 * 20 19 18 23 23 O 1.21591 * 120.60012 * 227.87450 * 22 20 19 24 24 N 1.35475 * 118.80101 * 47.89627 * 22 20 19 25 25 C 1.46401 * 119.55595 * 4.88601 * 24 22 20 26 26 C 1.52277 * 110.74329 * 285.01086 * 25 24 22 27 27 O 1.35525 * 120.86539 * 180.46016 * 19 18 17 28 28 H 1.09006 * 109.46984 * 300.00431 * 1 2 3 29 29 H 1.09003 * 109.46972 * 59.99997 * 1 2 3 30 30 H 1.08999 * 109.47542 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47141 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46969 * 300.00004 * 3 2 1 33 33 H 1.08997 * 109.47203 * 59.99523 * 3 2 1 34 34 H 0.97004 * 119.99899 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47463 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.46887 * 59.99479 * 12 2 1 37 37 H 0.97005 * 119.99950 * 359.97438 * 13 12 2 38 38 H 1.07994 * 119.81265 * 359.88539 * 17 16 14 39 39 H 1.08000 * 119.94003 * 180.02562 * 18 17 16 40 40 H 1.08008 * 120.21296 * 180.18230 * 21 20 19 41 41 H 0.96997 * 120.22224 * 184.90862 * 24 22 20 42 42 H 1.09002 * 109.21893 * 45.32599 * 25 24 22 43 43 H 1.09003 * 109.21228 * 164.70225 * 25 24 22 44 44 H 1.08988 * 109.04704 * 165.70699 * 26 25 24 45 45 H 1.08996 * 109.04274 * 284.58995 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5751 -1.4804 3.7811 16 6 1.3852 0.2050 4.8750 17 6 0.5819 1.3439 4.7463 18 6 0.1167 1.9978 5.8654 19 6 0.4429 1.5307 7.1304 20 6 1.2540 0.3901 7.2697 21 6 1.7218 -0.2716 6.1410 22 6 1.5946 -0.0833 8.6254 23 8 2.7432 -0.3582 8.9146 24 7 0.6044 -0.2064 9.5418 25 6 -0.7841 0.0265 9.1403 26 6 -1.0533 1.5154 8.9685 27 8 -0.0142 2.1569 8.2420 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7095 1.1618 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.3251 1.7117 3.7639 39 1 -0.5031 2.8757 5.7581 40 1 2.3425 -1.1496 6.2439 41 1 0.8140 -0.4470 10.4578 42 1 -0.9751 -0.4839 8.1963 43 1 -1.4503 -0.3726 9.9051 44 1 -1.9937 1.6474 8.4337 45 1 -1.1370 1.9775 9.9521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:45 Heat of formation + Delta-G solvation = -79.574748 kcal Electronic energy + Delta-G solvation = -28330.950913 eV Core-core repulsion = 24313.783948 eV Total energy + Delta-G solvation = -4017.166965 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.43057 -39.66907 -38.79806 -37.56600 -36.35358 -35.33059 -33.47846 -31.73352 -31.27167 -30.69724 -29.30669 -25.85655 -25.77499 -25.25336 -25.06318 -23.52233 -22.71674 -21.27066 -20.11883 -18.93245 -18.31991 -17.92175 -17.46803 -16.89219 -16.45446 -16.03213 -15.84845 -15.25619 -14.89304 -14.86647 -14.69149 -14.39848 -14.25150 -13.88119 -13.73231 -13.31654 -13.02418 -12.95421 -12.86429 -12.32295 -12.28939 -12.18428 -11.66740 -11.43071 -11.24009 -10.92634 -10.89613 -10.68793 -10.43612 -10.30309 -10.23252 -9.74910 -9.68532 -9.55664 -9.40906 -9.33150 -9.01597 -8.82424 -8.50315 -8.36177 -6.05468 -4.15297 0.31191 0.80304 2.23696 2.58027 2.87303 3.17218 3.25663 3.34463 3.38761 3.56285 3.71053 4.01568 4.20729 4.26332 4.37876 4.46885 4.73707 4.78781 4.80207 4.89529 5.07040 5.08019 5.15086 5.21757 5.54145 5.74627 5.85023 5.97967 6.15841 6.22960 6.27934 6.37848 6.45906 6.63924 6.71601 6.76192 6.87939 6.93244 6.97190 6.97340 7.30562 7.51077 7.66371 7.77533 7.93684 7.96811 8.10187 8.34264 8.56074 8.85568 9.50839 10.96082 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002394 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.466477 B =11691.407907 C =12271.835501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.708 5.708 14 C 0.547 3.453 15 O -0.543 6.543 16 C -0.134 4.134 17 C -0.048 4.048 18 C -0.139 4.139 19 C 0.145 3.855 20 C -0.175 4.175 21 C 0.003 3.997 22 C 0.577 3.423 23 O -0.520 6.520 24 N -0.725 5.725 25 C 0.070 3.930 26 C 0.046 3.954 27 O -0.323 6.323 28 H 0.005 0.995 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.407 0.593 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 3.787 22.250 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.333 3.667 15 O -0.422 6.422 16 C -0.138 4.138 17 C -0.067 4.067 18 C -0.158 4.158 19 C 0.100 3.900 20 C -0.178 4.178 21 C -0.016 4.016 22 C 0.364 3.636 23 O -0.395 6.395 24 N -0.379 5.379 25 C -0.055 4.055 26 C -0.030 4.030 27 O -0.239 6.239 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.426 3.249 22.173 23.941 hybrid contribution -0.111 -0.189 -0.541 0.584 sum -8.537 3.060 21.632 23.456 Atomic orbital electron populations 1.21842 0.97738 0.99257 1.00055 1.18372 0.92811 0.92796 0.90548 1.21846 0.98756 0.98293 1.00071 1.21017 1.31440 1.12121 0.89810 0.92316 1.24877 0.94834 0.94916 0.98880 1.69803 1.36740 1.22755 1.23165 0.86513 0.78646 0.79778 0.82945 1.19737 1.21066 1.21046 1.21800 0.98420 0.95884 0.83057 1.46257 1.52164 1.31606 1.05852 1.18059 0.81016 0.84343 0.83317 1.90778 1.38404 1.26233 1.86814 1.20165 1.01729 0.97673 0.94201 1.21479 0.93231 0.92685 0.99287 1.21054 1.02397 1.02126 0.90180 1.18930 0.92911 0.91343 0.86780 1.20184 1.04198 0.99390 0.94074 1.21119 0.93496 0.97904 0.89106 1.18303 0.84653 0.76057 0.84614 1.90865 1.19572 1.48804 1.80255 1.45856 1.06382 1.72385 1.13299 1.22052 0.83489 0.96562 1.03425 1.23203 0.89691 0.92913 0.97170 1.85847 1.54081 1.47049 1.36962 0.97620 0.89498 0.95343 0.95297 0.89494 0.97590 0.93037 0.92361 0.92388 0.76642 0.84126 0.83803 0.83338 0.75574 0.89940 0.87631 0.90847 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -12.97 8.01 -34.44 -0.28 -13.25 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.12 9.35 55.43 0.52 -22.60 16 8 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 13 N -0.71 -12.22 4.91 -61.32 -0.30 -12.52 16 14 C 0.55 9.51 7.76 -12.43 -0.10 9.42 16 15 O -0.54 -11.40 16.33 5.29 0.09 -11.31 16 16 C -0.13 -1.86 5.87 -104.98 -0.62 -2.47 16 17 C -0.05 -0.52 9.52 -39.13 -0.37 -0.89 16 18 C -0.14 -1.31 9.98 -39.59 -0.40 -1.71 16 19 C 0.15 1.53 5.55 -38.49 -0.21 1.31 16 20 C -0.17 -2.15 4.82 -104.91 -0.51 -2.65 16 21 C 0.00 0.05 9.31 -38.88 -0.36 -0.31 16 22 C 0.58 7.23 7.25 -12.13 -0.09 7.14 16 23 O -0.52 -8.53 17.92 5.29 0.09 -8.44 16 24 N -0.72 -5.71 5.44 -61.59 -0.33 -6.05 16 25 C 0.07 0.33 6.28 -4.46 -0.03 0.30 16 26 C 0.05 0.23 6.97 36.79 0.26 0.48 16 27 O -0.32 -3.00 9.89 -18.27 -0.18 -3.18 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.40 5.99 4.17 -40.82 -0.17 5.82 16 38 H 0.14 1.29 6.37 -52.49 -0.33 0.96 16 39 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.15 2.22 7.64 -52.48 -0.40 1.82 16 41 H 0.41 2.47 8.95 -40.82 -0.37 2.11 16 42 H 0.08 0.46 7.45 -51.93 -0.39 0.07 16 43 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.24 8.14 -51.94 -0.42 -0.19 16 45 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -32.46 363.88 -7.86 -40.32 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.92 Total: 5.14 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.29 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.12 Total: -41.17 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.00 Total: -22.93 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.46 -7.86 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.255 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds