Wall clock time and date at job start Tue Mar 31 2020 16:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47583 * 2 1 4 4 C 1.50700 * 109.47309 * 239.99807 * 2 1 3 5 5 H 1.07999 * 120.00679 * 240.00374 * 4 2 1 6 6 C 1.37884 * 119.99668 * 59.99935 * 4 2 1 7 7 N 1.31507 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99595 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47192 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47033 * 120.00339 * 8 6 4 11 11 H 1.48504 * 109.46927 * 239.99928 * 8 6 4 12 12 C 1.53002 * 109.47367 * 120.00016 * 2 1 3 13 13 N 1.46500 * 109.46917 * 299.99963 * 12 2 1 14 14 C 1.34777 * 120.00318 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99481 * 359.97438 * 14 13 12 16 16 C 1.47633 * 120.00370 * 179.97438 * 14 13 12 17 17 C 1.39969 * 119.98933 * 359.97438 * 16 14 13 18 18 C 1.37704 * 120.36633 * 179.86254 * 17 16 14 19 19 C 1.38738 * 120.11506 * 0.02562 * 18 17 16 20 20 C 1.40653 * 119.92780 * 0.22665 * 19 18 17 21 21 C 1.38949 * 119.99479 * 359.66173 * 20 19 18 22 22 C 1.47586 * 118.96145 * 179.62063 * 20 19 18 23 23 O 1.21591 * 120.60012 * 227.87450 * 22 20 19 24 24 N 1.35475 * 118.80101 * 47.89627 * 22 20 19 25 25 C 1.46401 * 119.55595 * 4.88601 * 24 22 20 26 26 C 1.52277 * 110.74329 * 285.01086 * 25 24 22 27 27 O 1.35525 * 120.86539 * 180.46016 * 19 18 17 28 28 H 1.09006 * 109.46984 * 300.00431 * 1 2 3 29 29 H 1.09003 * 109.46972 * 59.99997 * 1 2 3 30 30 H 1.08999 * 109.47542 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47141 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46969 * 300.00004 * 3 2 1 33 33 H 1.08997 * 109.47203 * 59.99523 * 3 2 1 34 34 H 0.97004 * 119.99899 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47463 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.46887 * 59.99479 * 12 2 1 37 37 H 0.97005 * 119.99950 * 359.97438 * 13 12 2 38 38 H 1.07994 * 119.81265 * 359.88539 * 17 16 14 39 39 H 1.08000 * 119.94003 * 180.02562 * 18 17 16 40 40 H 1.08008 * 120.21296 * 180.18230 * 21 20 19 41 41 H 0.96997 * 120.22224 * 184.90862 * 24 22 20 42 42 H 1.09002 * 109.21893 * 45.32599 * 25 24 22 43 43 H 1.09003 * 109.21228 * 164.70225 * 25 24 22 44 44 H 1.08988 * 109.04704 * 165.70699 * 26 25 24 45 45 H 1.08996 * 109.04274 * 284.58995 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1454 -2.2878 -3.6037 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5751 -1.4804 3.7811 16 6 1.3852 0.2050 4.8750 17 6 0.5819 1.3439 4.7463 18 6 0.1167 1.9978 5.8654 19 6 0.4429 1.5307 7.1304 20 6 1.2540 0.3901 7.2697 21 6 1.7218 -0.2716 6.1410 22 6 1.5946 -0.0833 8.6254 23 8 2.7432 -0.3582 8.9146 24 7 0.6044 -0.2064 9.5418 25 6 -0.7841 0.0265 9.1403 26 6 -1.0533 1.5154 8.9685 27 8 -0.0142 2.1569 8.2420 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 0.7095 1.1618 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7489 1.2493 37 1 0.9943 0.7583 2.3564 38 1 0.3251 1.7117 3.7639 39 1 -0.5031 2.8757 5.7581 40 1 2.3425 -1.1496 6.2439 41 1 0.8140 -0.4470 10.4578 42 1 -0.9751 -0.4839 8.1963 43 1 -1.4503 -0.3726 9.9051 44 1 -1.9937 1.6474 8.4337 45 1 -1.1370 1.9775 9.9521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822399340.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:44 Heat of formation + Delta-G solvation = -102.833773 kcal Electronic energy + Delta-G solvation = -28331.959500 eV Core-core repulsion = 24313.783948 eV Total energy + Delta-G solvation = -4018.175552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24748 -40.97052 -39.68616 -38.62541 -37.95898 -36.07876 -35.12853 -33.07441 -32.28844 -31.90649 -30.01424 -27.53761 -27.51290 -26.92348 -25.95497 -24.51043 -23.58516 -22.16869 -21.28503 -20.64831 -19.12352 -19.02284 -18.28236 -17.83028 -17.67731 -17.26130 -16.81306 -16.54587 -16.49864 -16.33066 -15.69746 -15.36118 -15.12587 -15.02273 -14.79207 -14.65706 -14.60759 -14.07181 -13.97699 -13.74451 -13.22689 -13.12508 -13.06966 -12.99282 -12.68332 -12.57175 -12.38387 -12.23529 -12.13002 -11.60377 -11.47296 -11.34303 -11.18618 -10.99362 -10.68164 -10.39395 -10.33575 -10.20287 -10.12325 -9.77192 -8.01791 -6.16681 -0.59008 -0.12530 1.30453 1.41694 1.46456 1.55341 1.65501 2.03356 2.22809 2.38323 2.48933 2.65900 3.22181 3.26349 3.61322 3.65374 3.82215 3.92300 3.94064 4.14264 4.19169 4.42426 4.50456 4.51266 4.63097 4.69181 4.72582 4.79329 4.86372 4.99520 5.00649 5.07362 5.07638 5.13400 5.21601 5.31243 5.37740 5.56074 5.69332 5.69794 5.74149 5.88068 6.18131 6.22885 6.30006 6.45042 6.57292 6.87096 6.96504 7.19067 7.50925 8.97256 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002394 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.466477 B =11691.407907 C =12271.835501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.548 3.452 15 O -0.589 6.589 16 C -0.153 4.153 17 C -0.034 4.034 18 C -0.127 4.127 19 C 0.163 3.837 20 C -0.188 4.188 21 C -0.008 4.008 22 C 0.568 3.432 23 O -0.575 6.575 24 N -0.709 5.709 25 C 0.063 3.937 26 C 0.038 3.962 27 O -0.337 6.337 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.260 0.740 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.410 0.590 38 H 0.163 0.837 39 H 0.181 0.819 40 H 0.122 0.878 41 H 0.417 0.583 42 H 0.075 0.925 43 H 0.148 0.852 44 H 0.101 0.899 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.283 5.848 23.846 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.181 4.181 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.208 1.208 12 C 0.022 3.978 13 N -0.350 5.350 14 C 0.337 3.663 15 O -0.471 6.471 16 C -0.156 4.156 17 C -0.052 4.052 18 C -0.145 4.145 19 C 0.118 3.882 20 C -0.191 4.191 21 C -0.028 4.028 22 C 0.356 3.644 23 O -0.455 6.455 24 N -0.362 5.362 25 C -0.061 4.061 26 C -0.036 4.036 27 O -0.253 6.253 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.249 0.751 38 H 0.181 0.819 39 H 0.199 0.801 40 H 0.140 0.860 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.166 0.834 44 H 0.119 0.881 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.308 5.341 23.799 26.885 hybrid contribution 0.659 -0.798 -0.884 1.361 sum -10.649 4.543 22.915 25.674 Atomic orbital electron populations 1.21686 0.96757 0.98853 1.00673 1.18363 0.93525 0.93026 0.89975 1.21702 0.97964 0.97790 1.00659 1.21294 1.31642 1.12128 0.91617 0.93915 1.25403 0.95163 0.95598 1.00803 1.69893 1.36975 1.23164 1.23545 0.85747 0.78139 0.78719 0.80423 1.20246 1.20653 1.20788 1.21361 0.97182 0.95291 0.83943 1.45994 1.52326 1.31812 1.04889 1.18577 0.79936 0.83704 0.84116 1.90751 1.40470 1.28409 1.87460 1.19796 1.04276 0.99410 0.92104 1.21676 0.91542 0.91045 1.00977 1.21376 1.01750 1.02511 0.88846 1.19040 0.91473 0.89737 0.87957 1.20200 1.05104 1.00461 0.93376 1.20921 0.94009 0.97783 0.90101 1.18541 0.84684 0.75805 0.85419 1.90829 1.21884 1.51539 1.81218 1.45846 1.07013 1.70332 1.12989 1.22404 0.81945 0.97045 1.04681 1.23587 0.89372 0.92515 0.98167 1.85820 1.55345 1.47517 1.36657 0.94008 0.91724 0.96239 0.96442 0.91673 0.94087 0.92997 0.94267 0.93969 0.75061 0.81934 0.80122 0.86024 0.74495 0.90607 0.83382 0.88088 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -27.59 8.01 25.60 0.21 -27.38 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 6 C 0.03 1.57 5.15 84.66 0.44 2.00 16 7 N -0.90 -46.71 9.35 21.45 0.20 -46.51 16 8 Si 0.94 42.27 29.54 68.60 2.03 44.30 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 C 0.15 6.14 4.50 86.38 0.39 6.52 16 13 N -0.70 -23.62 4.91 -466.17 -2.29 -25.91 16 14 C 0.55 19.34 7.76 86.72 0.67 20.01 16 15 O -0.59 -25.99 16.33 -3.99 -0.07 -26.05 16 16 C -0.15 -4.15 5.87 -20.10 -0.12 -4.26 16 17 C -0.03 -0.62 9.52 22.56 0.21 -0.41 16 18 C -0.13 -1.87 9.98 22.26 0.22 -1.65 16 19 C 0.16 2.97 5.55 22.98 0.13 3.09 16 20 C -0.19 -4.52 4.82 -20.05 -0.10 -4.62 16 21 C -0.01 -0.23 9.31 22.72 0.21 -0.02 16 22 C 0.57 14.29 7.25 86.60 0.63 14.92 16 23 O -0.57 -19.84 17.92 -4.00 -0.07 -19.91 16 24 N -0.71 -9.98 5.44 -466.65 -2.54 -12.52 16 25 C 0.06 0.37 6.28 86.16 0.54 0.91 16 26 C 0.04 0.20 6.97 71.74 0.50 0.70 16 27 O -0.34 -4.98 9.89 -88.28 -0.87 -5.85 16 28 H 0.04 1.41 6.86 -2.38 -0.02 1.40 16 29 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 33 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 34 H 0.26 13.04 8.31 -92.71 -0.77 12.27 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 11.34 4.17 -92.70 -0.39 10.96 16 38 H 0.16 2.27 6.37 -2.91 -0.02 2.25 16 39 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.12 4.04 7.64 -2.91 -0.02 4.02 16 41 H 0.42 4.37 8.95 -92.71 -0.83 3.54 16 42 H 0.08 0.62 7.45 -2.39 -0.02 0.60 16 43 H 0.15 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -74.92 363.88 1.29 -73.62 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.17 Total: 15.97 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.07 Total: 2.86 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -4.62 Total: -84.94 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -1.01 Total: -51.81 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.92 1.29 -73.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399340.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.211 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds