Wall clock time and date at job start Tue Mar 31 2020 17:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00336 * 2 1 4 4 N 1.46504 * 109.47052 * 125.00565 * 3 2 1 5 5 C 1.46497 * 119.99584 * 274.96331 * 4 3 2 6 6 C 1.50701 * 109.47372 * 269.99962 * 5 4 3 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00087 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99911 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47000 * 60.00138 * 10 8 6 12 12 H 1.48498 * 109.47192 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47185 * 300.00533 * 10 8 6 14 14 C 1.34768 * 120.00194 * 94.96286 * 4 3 2 15 15 O 1.21585 * 120.00261 * 185.53297 * 14 4 3 16 16 C 1.47525 * 119.99971 * 5.54095 * 14 4 3 17 17 C 1.39740 * 120.77122 * 54.98301 * 16 14 4 18 18 C 1.38887 * 118.87571 * 179.97438 * 17 16 14 19 19 C 1.37853 * 119.43676 * 359.80068 * 18 17 16 20 20 N 1.32755 * 120.42063 * 0.36668 * 19 18 17 21 21 C 1.31857 * 122.58173 * 359.70912 * 20 19 18 22 22 O 1.35429 * 119.88600 * 180.02562 * 21 20 19 23 23 C 1.50789 * 122.25526 * 180.77317 * 19 18 17 24 24 C 1.52699 * 110.59989 * 341.95285 * 23 19 18 25 25 C 1.53310 * 108.42993 * 51.40193 * 24 23 19 26 26 C 1.50546 * 117.77021 * 179.75689 * 18 17 16 27 27 H 1.09009 * 109.24972 * 282.63940 * 26 18 17 28 28 O 1.42900 * 109.25082 * 42.10157 * 26 18 17 29 29 H 1.07999 * 120.00350 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99787 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99787 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46845 * 5.00182 * 3 2 1 33 33 H 1.08996 * 109.47222 * 245.00280 * 3 2 1 34 34 H 1.08998 * 109.47434 * 29.99959 * 5 4 3 35 35 H 1.09004 * 109.46977 * 150.00349 * 5 4 3 36 36 H 0.97002 * 120.00164 * 179.97438 * 9 8 6 37 37 H 1.07999 * 120.56219 * 359.90873 * 17 16 14 38 38 H 0.96698 * 114.00490 * 269.97940 * 22 21 20 39 39 H 1.08998 * 109.25765 * 102.24467 * 23 19 18 40 40 H 1.09009 * 109.25268 * 221.66471 * 23 19 18 41 41 H 1.08997 * 109.67525 * 171.14647 * 24 23 19 42 42 H 1.09006 * 109.66806 * 291.63667 * 24 23 19 43 43 H 1.09005 * 109.68917 * 170.35762 * 25 24 23 44 44 H 1.09006 * 109.68914 * 49.79476 * 25 24 23 45 45 H 0.96706 * 113.99725 * 300.00202 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5289 1.7627 2.4520 6 6 2.7151 3.2518 2.5890 7 1 3.1373 3.8205 1.7737 8 6 2.3456 3.8885 3.7548 9 7 1.8311 3.1962 4.7475 10 14 2.5759 5.7345 3.9243 11 1 1.7921 6.4297 2.8719 12 1 2.1046 6.1713 5.2630 13 1 4.0145 6.0699 3.7728 14 6 4.2775 0.9599 0.9572 15 8 5.0241 0.8853 1.9140 16 6 4.7769 0.6435 -0.3944 17 6 4.6514 1.5655 -1.4369 18 6 5.1359 1.2268 -2.6937 19 6 5.7299 -0.0028 -2.8821 20 7 5.8330 -0.8610 -1.8745 21 6 5.3885 -0.5903 -0.6630 22 8 5.5227 -1.5064 0.3254 23 6 6.2926 -0.4290 -4.2146 24 6 5.7281 0.4374 -5.3381 25 6 5.9226 1.9101 -4.9589 26 6 4.9827 2.2364 -3.8000 27 1 3.9532 2.2236 -4.1582 28 8 5.2900 3.5378 -3.2960 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.4728 1.5169 2.5634 35 1 3.1042 1.2520 3.2243 36 1 1.5714 3.6440 5.5679 37 1 4.1847 2.5247 -1.2684 38 1 4.7756 -2.1156 0.4011 39 1 7.3778 -0.3297 -4.1949 40 1 6.0310 -1.4712 -4.3984 41 1 6.2573 0.2246 -6.2669 42 1 4.6659 0.2278 -5.4648 43 1 5.6856 2.5438 -5.8136 44 1 6.9552 2.0771 -4.6525 45 1 4.7214 3.8217 -2.5671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:09 Heat of formation + Delta-G solvation = -65.990602 kcal Electronic energy + Delta-G solvation = -29355.209312 eV Core-core repulsion = 25338.631400 eV Total energy + Delta-G solvation = -4016.577912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23676 -39.15811 -38.20281 -36.64218 -35.75940 -35.35649 -33.29439 -32.84873 -32.04604 -30.16104 -29.37320 -27.59165 -25.78175 -24.59754 -23.89778 -22.78998 -22.45726 -20.63150 -19.98884 -19.19058 -18.34557 -17.68038 -17.23597 -16.86039 -16.47240 -16.02304 -15.57408 -15.51540 -14.76286 -14.67260 -14.44260 -14.26503 -13.92468 -13.68899 -13.51951 -13.34539 -13.07781 -12.85681 -12.67752 -12.18578 -12.12425 -11.81759 -11.75515 -11.43779 -11.34497 -11.31299 -11.16596 -11.09093 -10.96849 -10.65182 -10.57981 -10.26136 -9.88429 -9.72244 -9.66205 -9.23701 -9.07529 -8.70323 -8.48374 -7.80873 -6.10049 -4.15918 0.68628 0.95049 2.35325 3.08334 3.27646 3.31129 3.33258 3.35879 3.60475 3.80645 3.94708 4.24000 4.33029 4.40325 4.48742 4.54929 4.68609 4.83789 4.95233 5.06611 5.09423 5.16252 5.24136 5.27867 5.33284 5.36312 5.47165 5.50672 5.56553 5.58107 5.69733 5.86130 5.91251 5.94042 5.96942 6.07127 6.27422 6.69652 6.81137 6.98356 7.34535 7.36515 7.42137 7.47663 7.76486 7.85152 8.14923 8.24024 8.78195 8.93667 9.49382 10.97989 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012619 B = 0.003890 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.259432 B = 7196.834465 C = 7875.141551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 C 0.128 3.872 4 N -0.586 5.586 5 C 0.248 3.752 6 C -0.532 4.532 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.554 3.446 15 O -0.513 6.513 16 C -0.175 4.175 17 C -0.030 4.030 18 C -0.181 4.181 19 C 0.177 3.823 20 N -0.509 5.509 21 C 0.359 3.641 22 O -0.464 6.464 23 C -0.072 4.072 24 C -0.116 4.116 25 C -0.114 4.114 26 C 0.156 3.844 27 H 0.071 0.929 28 O -0.559 6.559 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.144 0.856 38 H 0.400 0.600 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -6.720 -21.717 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.005 3.995 4 N -0.317 5.317 5 C 0.129 3.871 6 C -0.571 4.571 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.339 3.661 15 O -0.389 6.389 16 C -0.182 4.182 17 C -0.056 4.056 18 C -0.184 4.184 19 C 0.040 3.960 20 N -0.228 5.228 21 C 0.178 3.822 22 O -0.271 6.271 23 C -0.109 4.109 24 C -0.154 4.154 25 C -0.152 4.152 26 C 0.096 3.904 27 H 0.089 0.911 28 O -0.366 6.366 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.161 0.839 38 H 0.258 0.742 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.605 -7.300 -21.388 22.749 hybrid contribution -1.220 1.472 1.016 2.165 sum 1.385 -5.828 -20.372 21.234 Atomic orbital electron populations 1.23822 0.95740 1.01880 1.00181 1.23321 0.96362 0.98740 1.00252 1.20775 0.93139 0.95666 0.89943 1.48183 1.07558 1.63627 1.12309 1.19329 0.95340 0.95009 0.77409 1.21358 1.42359 0.92543 1.00814 0.92510 1.24920 0.94916 0.98612 0.95436 1.69918 1.42005 1.35996 1.05121 0.86564 0.78705 0.84938 0.77267 1.20199 1.21105 1.20117 1.17731 0.82927 0.78637 0.86853 1.90817 1.55741 1.51477 1.40834 1.21290 1.03383 0.96976 0.96586 1.21516 0.94623 0.98784 0.90695 1.21073 1.03263 0.97427 0.96598 1.20851 0.92681 0.88565 0.93854 1.67028 1.19765 1.36255 0.99741 1.18909 0.90335 0.87692 0.85268 1.84805 1.47299 1.46598 1.48386 1.20467 1.00978 1.00843 0.88641 1.21544 1.02100 0.93729 0.97993 1.21543 1.00476 0.96392 0.96771 1.20469 0.98831 0.80513 0.90580 0.91150 1.86566 1.62599 1.32016 1.55380 0.88681 0.88161 0.88195 0.89326 0.90671 0.94690 0.93600 0.92551 0.83883 0.74204 0.89292 0.89224 0.89951 0.91018 0.90290 0.90407 0.77025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.02 0.42 -1.80 16 2 C -0.17 -2.32 9.84 -36.02 -0.35 -2.67 16 3 C 0.13 2.00 5.69 -5.19 -0.03 1.97 16 4 N -0.59 -11.98 2.44 -177.67 -0.43 -12.42 16 5 C 0.25 6.31 5.22 -5.19 -0.03 6.28 16 6 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 10 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.55 11.73 6.82 -12.48 -0.09 11.65 16 15 O -0.51 -13.41 16.39 4.14 0.07 -13.34 16 16 C -0.18 -2.97 4.91 -104.78 -0.51 -3.49 16 17 C -0.03 -0.42 6.77 -38.78 -0.26 -0.68 16 18 C -0.18 -2.14 5.57 -104.60 -0.58 -2.72 16 19 C 0.18 2.16 6.63 -82.29 -0.55 1.62 16 20 N -0.51 -7.51 10.18 -9.20 -0.09 -7.61 16 21 C 0.36 5.88 7.77 -16.77 -0.13 5.75 16 22 O -0.46 -7.51 12.83 -19.13 -0.25 -7.76 16 23 C -0.07 -0.61 5.91 -27.99 -0.17 -0.77 16 24 C -0.12 -0.72 5.97 -26.73 -0.16 -0.88 16 25 C -0.11 -0.89 5.62 -26.70 -0.15 -1.04 16 26 C 0.16 1.47 3.49 -28.09 -0.10 1.37 16 27 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 28 O -0.56 -6.07 13.14 -35.23 -0.46 -6.54 16 29 H 0.09 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 31 H 0.10 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 33 H 0.08 0.99 4.43 -51.93 -0.23 0.76 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.14 1.74 6.22 -52.49 -0.33 1.42 16 38 H 0.40 4.40 9.06 45.56 0.41 4.81 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.38 3.26 7.38 45.56 0.34 3.59 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -36.04 375.78 -7.67 -43.70 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.77 Total: 5.92 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -3.11 Total: 1.33 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.21 Total: -45.36 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.64 Total: -27.63 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.04 -7.67 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.287 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds